In This Issue - pv
doi:10.1038/nchembio0506-v
doi:10.1038/nchembio0506-223
Full Text - Keeping chemistry in the equation | PDF (71 KB) - Keeping chemistry in the equation
Jeffery W Kelly & William E Balch
doi:10.1038/nchembio0506-224
Eukaryotic cells are specialized, interdependent functional units of complex tissues that are composed of metabolically integrated systems defined by chemically distinct organelles that operate as reaction vessels. It is now clear that the small-molecule and polymer-based composition of these organelles plays a crucial role in generating and maintaining protein folds and functions through the systems chemistry of the local environments.
Full Text - The integration of cell and chemical biology in protein folding | PDF (351 KB) - The integration of cell and chemical biology in protein folding
Frederik De Smet, Peter Carmeliet & Monica Autiero
doi:10.1038/nchembio0506-228
There is a growing medical need for additional anti-angiogenic drugs. A new model of regenerative angiogenesis in the fin of adult zebrafish promises to accelerate discovery of genes and drugs related to angiogenesis.
Full Text - Fishing and frogging for anti-angiogenic drugs | PDF (202 KB) - Fishing and frogging for anti-angiogenic drugs
See also: Article by Bayliss et al.
Matthew Bogyo
doi:10.1038/nchembio0506-229
Small-molecule probes that chemically tag targets by virtue of their enzymatic activities offer a means to focus system-wide experiments and provide functional information for entire families of proteins. Recent advances in the design and application of light-activated probes that target metalloproteases have created the opportunity to study this medically important family of enzymes in unprecedented detail.
Full Text - Metalloproteases see the light | PDF (134 KB) - Metalloproteases see the light
See also: Article by Sieber et al.
Ning Gao & Joachim Frank
doi:10.1038/nchembio0506-231
Translation starts with the assembly of the ribosome from its subunits, which requires the formation of intersubunit bridges. A combinatorial mutagenesis approach has now identified a number of the 16S rRNA residues involved in intersubunit bridging that are functionally important for the ribosome.
Full Text - A library of RNA bridges | PDF (213 KB) - A library of RNA bridges
See also: Letter by Rackham et al.
John E Cronan
doi:10.1038/nchembio0506-232
The crystal structures of two chain-building megasynthases, the fatty acid synthases of mammals and fungi, have recently been reported. Although both are composed of modules derived from the discrete enzymes that catalyze bacterial fatty acid synthesis, the two synthases have dramatically different architectures.
Full Text - Remarkable structural variation within fatty acid megasynthases | PDF (203 KB) - Remarkable structural variation within fatty acid megasynthases
W Scott Moye-Rowley
doi:10.1038/nchembio0506-234
Oxidation of cysteine residues is a well-described means of sensing oxidative stress. Analysis of a bacterial transcriptional repressor protein indicates that metal-catalyzed oxidation of histidine residues can provide oxidative stress control in a cysteine-independent fashion.
Full Text - Redox sensing and histidine oxidation: no longer PerR-fect strangers | PDF (100 KB) - Redox sensing and histidine oxidation: no longer PerR-fect strangers
doi:10.1038/nchembio0506-237
Full Text - Research Highlights | PDF (274 KB) - Research Highlights
James C Paulson, Ola Blixt & Brian E Collins
doi:10.1038/nchembio785

Abstract - Sweet spots in functional glycomics | Full Text - Sweet spots in functional glycomics | PDF (2,727 KB) - Sweet spots in functional glycomics
-synuclein fibrilization - pp249 - 253Daryl A Bosco, Douglas M Fowler, Qinghai Zhang, Jorge Nieva, Evan T Powers, Paul Wentworth, Jr, Richard A Lerner & Jeffery W Kelly
doi:10.1038/nchembio782

First Paragraph - Elevated levels of oxidized cholesterol metabolites in Lewy body disease brains accelerate [alpha]-synuclein fibrilization | Full Text - Elevated levels of oxidized cholesterol metabolites in Lewy body disease brains accelerate
-synuclein fibrilization | PDF (472 KB) - Elevated levels of oxidized cholesterol metabolites in Lewy body disease brains accelerate
-synuclein fibrilization | Supplementary information | Chemical compounds
Oliver Rackham, Kaihang Wang & Jason W Chin
doi:10.1038/nchembio783

First Paragraph - Functional epitopes at the ribosome subunit interface | Full Text - Functional epitopes at the ribosome subunit interface | PDF (559 KB) - Functional epitopes at the ribosome subunit interface | Supplementary information
See also: News and Views by Gao & Frank
Artem Y Lyubimov, Paula I Lario, Ibrahim Moustafa & Alice Vrielink
doi:10.1038/nchembio784

First Paragraph - Atomic resolution crystallography reveals how changes in pH shape the protein microenvironment | Full Text - Atomic resolution crystallography reveals how changes in pH shape the protein microenvironment | PDF (500 KB) - Atomic resolution crystallography reveals how changes in pH shape the protein microenvironment | Supplementary information
Peter E Bayliss, Kimberly L Bellavance, Geoffrey G Whitehead, Joshua M Abrams, Sandrine Aegerter, Heather S Robbins, Douglas B Cowan, Mark T Keating, Terence O'Reilly, Jeanette M Wood, Thomas M Roberts & Joanne Chan
doi:10.1038/nchembio778

Abstract - Chemical modulation of receptor signaling inhibits regenerative angiogenesis in adult zebrafish | Full Text - Chemical modulation of receptor signaling inhibits regenerative angiogenesis in adult zebrafish | PDF (811 KB) - Chemical modulation of receptor signaling inhibits regenerative angiogenesis in adult zebrafish | Supplementary information | Chemical compounds
See also: News and Views by De Smet et al.
Stephan A Sieber, Sherry Niessen, Heather S Hoover & Benjamin F Cravatt
doi:10.1038/nchembio781

Abstract - Proteomic profiling of metalloprotease activities with cocktails of active-site probes | Full Text - Proteomic profiling of metalloprotease activities with cocktails of active-site probes | PDF (555 KB) - Proteomic profiling of metalloprotease activities with cocktails of active-site probes | Supplementary information | Chemical compounds
See also: News and Views by Bogyo
Nature Chemical Biology
ISSN: 1552-4450
EISSN: 1548-7105
