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Microbiomes

Human microbiome cultivation expands with AI

An automated system for picking bacterial colonies is used to create a biobank of personalized microbiomes.

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Fig. 1: Summary of the CAMII workflow for automated and targeted high-throughput culturomics from single microbiome samples.

References

  1. Huang, Y. et al. Nat. Biotechnol. https://doi.org/10.1038/s41587-023-01674-2 (2023).

    Article  PubMed  Google Scholar 

  2. Larsen, J. et al. Euro Surveill. 22, 30573 (2017).

    Article  PubMed  PubMed Central  Google Scholar 

  3. Lagier, J. C. et al. Nat. Microbiol. 1, 16203 (2016).

    Article  CAS  PubMed  Google Scholar 

  4. Jiang, M. Z. et al. Sci. Rep. 12, 18145 (2022).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. Bellais, S. et al. Microbiome 10, 24 (2022).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  6. Pasolli, E. et al. Cell 176, 649–662.e20 (2019).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  7. Watterson, W. J. et al. eLife 9, e56998 (2020).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  8. Thomas, A. M. & Segata, N. BMC Biol. 17, 48 (2019).

    Article  PubMed  PubMed Central  Google Scholar 

  9. Sousa, A. M., Machado, I., Nicolau, A. & Pereira, M. O. J. Microbiol. Methods 95, 327–335 (2013).

    Article  PubMed  Google Scholar 

Download references

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Correspondence to Nicola Segata.

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Selma-Royo, M., Segata, N. & Ricci, L. Human microbiome cultivation expands with AI. Nat Biotechnol 41, 1389–1391 (2023). https://doi.org/10.1038/s41587-023-01852-2

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