Abstract
Colitis is a common disease of the colon that is very difficult to treat. Probiotic bacteria could be an effective treatment. The probiotic Escherichia coli Nissle 1917 (EcN) was engineered to synthesize the ketone body (R)-3-hydroxybutyrate (3HB) for sustainable production in the gut lumen of mice suffering from colitis. Components of heterologous 3HB synthesis routes were constructed, expressed, optimized, and inserted into the EcN genome, combined with deletions in competitive branch pathways. The genome-engineered EcN produced the highest 3HB level of 0.6 g/L under microaerobic conditions. The live therapeutic was found to colonize the mouse gastrointestinal tract over 14 days, elevating gut 3HB and short-chain-length fatty acid (SCFA) levels 8.7- and 3.1-fold compared to those of wild-type EcN, respectively. The sustainable presence of 3HB in mouse guts promoted the growth of probiotic bacteria, especially Akkermansia spp., to over 31% from the initial 2% of all the microbiome. As a result, the engineered EcN termed EcNL4 ameliorated colitis induced via dextran sulfate sodium (DSS) in mice. Compared to wild-type EcN or oral administration of 3HB, oral EcNL4 uptake demonstrated better effects on mouse weights, colon lengths, occult blood levels, gut tissue myeloperoxidase activity and proinflammatory cytokine concentrations. Thus, a promising live bacterium was developed to improve colonic microenvironments and further treat colitis. This proof-of-concept design can be employed to treat other diseases of the colon.
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Data availability
Data supporting the study are available from the corresponding authors by request. Source data are provided with this paper.
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Acknowledgements
This research was financially supported by a grant from the Chunfeng Foundation (2020Z99CFG002) of Tsinghua University. Other support includes the National Natural Science Foundation of China (Grant Nos. 31870859, 21761132013, 31771886, and 31971170).
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XY designed and conducted the study. XYL and DZ performed the experiments. YDZ and ZHL assisted with the animal experiments. XL helped draw the illustrations. XY wrote the manuscript. FQW and GQC supervised the project and helped write the manuscript. Source data are provided with this paper
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Yan, X., Liu, XY., Zhang, D. et al. Construction of a sustainable 3-hydroxybutyrate-producing probiotic Escherichia coli for treatment of colitis. Cell Mol Immunol 18, 2344–2357 (2021). https://doi.org/10.1038/s41423-021-00760-2
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DOI: https://doi.org/10.1038/s41423-021-00760-2
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