Abstract
Microorganisms play a critical role in nitrogen cycling by mineralising dissolved organic nitrogen (DON) compounds into bioavailable inorganic forms (DIN). Although DIN is crucial for seagrass growth, the hypothesis that seagrass leaf associated-microorganisms could convert DON to forms available for plant uptake has never been tested. We conducted a laboratory-based experiment in which seagrass (Posidonia sinuosa) leaves were incubated with 15N-amino acids (aa), with and without associated microorganisms. Samples were collected after 0.5, 2, 6 and 12 h. Both bulk stable isotope and nanoscale secondary ion mass spectrometry (NanoSIMS) analysis showed high accumulation of 15N within seagrass leaf tissues with an associated microbiota, but not in plants devoid of microorganisms. These results significantly change our understanding of the mechanisms of seagrass nitrogen use and provide evidence that seagrass microbiota increase nitrogen availability for uptake by seagrass leaves by mineralising aa, thus enhancing growth and productivity of these important coastal ecosystems.
Introduction
Seagrass meadows are extremely productive aquatic habitats that provide important ecological functions, such as refuge and nutrient sources for a great variety of marine organisms [1, 2]. Nitrogen (N) is an essential element for maintaining seagrass growth and productivity [3, 4], with foliar uptake of N often contributing more of the plant total N requirement compared with roots (up to 74% [5]). Although seagrass leaves preferentially uptake inorganic nitrogen (DIN [6]), paradoxically, seagrasses flourish in coastal environments characterised by scarce inorganic nutrients, but high concentrations of dissolved organic nitrogen (DON [7, 8]).
Within the marine environment, microorganisms on the surface of plants and animals can be highly abundant [9], forming functional partnerships that can play a critical role in nutrient acquisition from oligotrophic waters [10]. Seagrass leaves provide a physical substratum for a rich epiphytic community of autotrophic and heterotrophic microorganisms [11, 12]. Surprisingly, while the contribution of the autotrophic microbiota (i.e. nitrogen-fixing bacteria) to enhance seagrass N availability has been extensively reported [13], the significance of heterotrophic microorganisms on seagrass leaves in facilitating the plant’s ability to uptake N from DON has been largely overlooked.
Materials and methods
Here, we tested whether seagrass microbiota, through the conversion of amino acids (aa) into bioavailable DIN, mediate the assimilation of N by seagrass leaves. We exposed seagrass (Posidonia sinuosa) leaves, with and without microorganisms, to 15N-enriched aa (50 µM of 98% 15N-aa; NLM-2161 Cambridge Isotope Laboratories) and 14N-aa (controls; 50 µM of 98% 14N-aa; ULM-2314 Cambridge Isotope Laboratories) over 12 h. Epiphytes and microorganisms were removed through scraping visible leaf epiphytes using a razor blade and incubation with antibiotics, followed by examination of potential damage by transmission electron microscopy and pulse amplitude modulated (PAM) fluorometry (see Supplementary Methods including Figs. S1, S2 & S3). 15N accumulation into seagrass leaves (n = 3 per treatment/control) was first measured by isotope ratio mass spectrometry (IRMS), after which a subset of samples was randomly selected and analysed by high-resolution mass spectrometry (NanoSIMS) to show 15N accumulation in microorganisms on the leaf surface and discrete sub-cellular components (cell wall, cytosol, vacuole and chloroplast) of seagrass leaves (see Supplementary Methods for details of techniques).
Results and discussion
Evidence that microorganisms associated with P. sinuosa leaves facilitate seagrass uptake of 15N derived from aa was provided by our results of bulk tissue analysis (IRMS) of seagrass leaves with and without intact microorganisms. At all times following incubation, 15N accumulation was greater in leaves with an associated microbiota compared to those where microorganisms had been removed, with levels 4.5 times higher in leaves with microorganisms by 12 h (p < 0.001; Supplementary Fig. S3). However, bulk isotope measures are unable to discern specific isotope tracer accumulation points or the source of slight 15N enrichment we detected in leaves removed of microorganisms. Consequently, high-resolution secondary ion mass spectrometry (NanoSIMS) was done on representative samples to trace the uptake of 15N derived from aa at the P. sinuosa leaf–microbial interface.
NanoSIMS analysis of seagrass leaves with intact microorganisms clearly distinguished the associated microorganisms from seagrass cells, with resolution sufficient to differentiate the sub-cellular components of the seagrass leaf (cell wall, vacuole, cytosol and chloroplast; Supplementary Fig. S5). After 0.5 h incubation in 15N-aa, analysis showed microorganisms on the surface of the seagrass leaf were highly enriched compared to the adjacent seagrass cells (Figs. 1 and 2). The microorganisms remained more 15N-enriched than adjacent seagrass cells at each time, and their enrichment was characterised by an exponential accumulation of 15N over time (Fig. 2). By 12 h, microorganisms were ~200 times more 15N-enriched than unlabelled reference samples, indicating the efficiency of microorganisms to utilise aa through the activity of intracellular and extracellular enzymes that break down aa to produce DIN [14].
The presence of microorganisms, and their ability to mineralise aa, clearly influenced the accumulation of 15N into different components of the seagrass tissue over the experiment timescale (Figs. 1 and 2). Within 0.5 h of incubation, 15N was 26 times higher in the outer cell wall of epidermal cells of seagrass leaves with microorganisms present compared to those with microorganisms removed. While the mechanisms of absorption of solutes through the cuticle are not fully characterised [15], the enhanced and subsequent decreased enrichment of 15N in the cell wall (Figs. 1a–c and 2) suggests that: (i) the movement of N across the seagrass cuticle is a rapid process [16]; (ii) the added aa source was quickly exhausted; or less likely; and (iii) the plant is able to limit N uptake once it has reached substrate saturation [6]. Slight 15N accumulation was first observed in the cytosol and vacuole after 0.5 h, followed by an exponential accumulation over time (Fig. 1d). The chloroplasts that proliferate at the outer edge of the seagrass epidermal cells accumulated 15N more slowly than other seagrass sub-components, and still showed increasing enrichment at the final 12 h sampling time. Since microbial catabolism of aa results in exuded ammonium (NH4+ [14]) and NH4+ is the preferred DIN source for foliar seagrass acquisition, the microorganisms associated with seagrass above-ground tissue appear to provide a mechanism for the seagrass leaves to access N derived from aa. While NH4+is harmful to plant tissue (at concentrations as low as 25 µM, ambient concentration around 15 µM [17]), our data show that it quickly moves to chloroplasts where it is assimilated into organic compounds, some of which are released back into the cytosol [6].
The role of microorganisms in mediating the uptake of N by seagrass leaves is further supported by isolated uptake of 15N by seagrass cells that were adjacent to small ‘patches’ of microorganisms missed in the removal process. NanoSIMS analysis, and corresponding live/dead cell counts, revealed a few examples where microorganisms were not entirely removed (<1% leaf surface; Supplementary Figs. S1 & S6). In these specific areas, the few remaining microorganisms were 20 times more 15N-enriched than those of unlabelled reference samples, and only seagrass cells directly adjacent to those microorganisms exhibited 15N enrichment (Supplementary Fig. S4). Overall, our results cast doubt over the ability of seagrasses to utilise DON directly as a source of essential N. Previous studies [18, 19] that postulated seagrass ability to directly use DON did not completely remove microorganisms from seagrass tissues prior to incubation with 15N, and our findings suggest that even small numbers of microorganisms on seagrass leaves influence the uptake of N derived from aa.
Conclusions
In this study, we show that the association between microorganisms and the leaves of P. sinuosa can provide an alternative source of N for uptake by seagrass from the abundant organic nitrogen pool. By mineralising amino acids, epiphytic microorganisms on P. sinuosa leaves link the nitrogen elemental cycle in seagrass meadows via heterotrophic metabolism and are likely to contribute significantly to the high productivity of seagrass meadows. Thus, the maintenance of a ‘stable’ partnership between seagrass leaves and its microbiota, indirectly enables the provision of the pivotal ecosystem services provided by these important, globally distributed, benthic habitats [20].
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Acknowledgements
The authors thank R. Bernasconi (Edith Cowan University, ECU) for her assistance with fieldwork and A. Lafratta (ECU) for assistance with the enrichment experiment. The authors thank Centre for Microscopy, Characterisation and Analysis (CMCA) at The University of Western Australia for its support offered with NanoSIMS and confocal microscope analysis. This work was supported by the School of Science (ECU), the Department of Biodiversity, Conservation and Attractions, Western Australia, and the Collaborative Research Network (CRN) comprising Edith Cowan University and The University of Western Australia.
Author contributions
F.T. conducted the fieldwork and performed the DO15N/DO14N enrichment experiment. J.B. and FT did epifluorescent microscopy. G.A.H. provided critical input for bulk stable isotope interpretation. F.T. and JB generated the NanoSIMS data. F.T., J.B., G.A.H. and AK interpreted the NanoSIMS data, analysed all the data and prepared figures. All authors contributed to the design of the research project, data interpretation, and manuscript production.
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Tarquinio, F., Bourgoure, J., Koenders, A. et al. Microorganisms facilitate uptake of dissolved organic nitrogen by seagrass leaves. ISME J 12, 2796–2800 (2018). https://doi.org/10.1038/s41396-018-0218-6
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DOI: https://doi.org/10.1038/s41396-018-0218-6
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