Protein databases articles within Scientific Reports

Featured

• Article
  19 October 2023 | Open Access

  Developing anti-microbial peptide database version 1 to provide comprehensive and exhaustive resource of manually curated AMPs

  • Rajat Kumar Mondal
  • , Debarup Sen
  •  & Sintu Kumar Samanta

• Article
  05 May 2022 | Open Access

  A database of calculated solution parameters for the AlphaFold predicted protein structures

  • Emre Brookes
  •  & Mattia Rocco

• Article
  11 June 2021 | Open Access

  Uncovering of cytochrome P450 anatomy by SecStrAnnotator

  • Adam Midlik
  • , Veronika Navrátilová
  •  & Karel Berka

• Article
  11 May 2021 | Open Access

  A unified resource and configurable model of the synapse proteome and its role in disease

  • Oksana Sorokina
  • , Colin Mclean
  •  & J. Douglas Armstrong

• Article
  15 September 2020 | Open Access

  StoneMod: a database for kidney stone modulatory proteins with experimental evidence

  • Supatcha Sassanarakkit
  • , Paleerath Peerapen
  •  & Visith Thongboonkerd

• Article
  04 July 2019 | Open Access

  A repository of protein abundance data of drug metabolizing enzymes and transporters for applications in physiologically based pharmacokinetic (PBPK) modelling and simulation

  • Mayur K. Ladumor
  • , Aarzoo Thakur
  •  & Saranjit Singh

• Article
  11 March 2019 | Open Access

  MorCVD: A Unified Database for Host-Pathogen Protein-Protein Interactions of Cardiovascular Diseases Related to Microbes

  • Nirupma Singh
  • , Venugopal Bhatia
  •  & Sonika Bhatnagar

• Article
  07 February 2019 | Open Access

  PFDB: A standardized protein folding database with temperature correction

  • Balachandran Manavalan
  • , Kunihiro Kuwajima
  •  & Jooyoung Lee

• Article
  20 August 2018 | Open Access

  PPInS: a repository of protein-protein interaction sitesbase

  • Vicky Kumar
  • , Suchismita Mahato
  •  & Mahesh Kulharia

• Article
  05 July 2018 | Open Access

  Using machine learning tools for protein database biocuration assistance

  • Caroline König
  • , Ilmira Shaim
  •  & Jesús Giraldo

• Article
  25 April 2018 | Open Access

  Integrative annotation and knowledge discovery of kinase post-translational modifications and cancer-associated mutations through federated protein ontologies and resources

  • Liang-Chin Huang
  • , Karen E. Ross
  •  & Natarajan Kannan

• Article
  22 January 2018 | Open Access

  Aminode: Identification of Evolutionary Constraints in the Human Proteome

  • Kevin T. Chang
  • , Junyan Guo
  •  & Marco Sardiello

• Article
  02 November 2017 | Open Access

  KIXBASE: A comprehensive web resource for identification and exploration of KIX domains

  • Archana Yadav
  • , Jitendra K. Thakur
  •  & Gitanjali Yadav

• Article
  19 July 2017 | Open Access

  CrossCheck: an open-source web tool for high-throughput screen data analysis

  • Jamil Najafov
  •  & Ayaz Najafov

• Article
  04 May 2017 | Open Access

  CancerPDF: A repository of cancer-associated peptidome found in human biofluids

  • Sherry Bhalla
  • , Ruchi Verma
  •  & Gajendra P. S. Raghava

• Article
  30 March 2017 | Open Access

  HIVed, a knowledgebase for differentially expressed human genes and proteins during HIV infection, replication and latency

  • Chen Li
  • , Sri H. Ramarathinam
  •  & Anthony W. Purcell

• Article
  23 January 2017 | Open Access

  SecretEPDB: a comprehensive web-based resource for secreted effector proteins of the bacterial types III, IV and VI secretion systems

  • Yi An
  • , Jiawei Wang
  •  & Jiangning Song

• Article
  01 December 2016 | Open Access

  G4IPDB: A database for G-quadruplex structure forming nucleic acid interacting proteins

  • Subodh Kumar Mishra
  • , Arpita Tawani
  •  & Amit Kumar

• Article
  07 November 2016 | Open Access

  PEPlife: A Repository of the Half-life of Peptides

  • Deepika Mathur
  • , Satya Prakash
  •  & Gajendra P. S. Raghava

• Article
  11 August 2016 | Open Access

  VHLdb: A database of von Hippel-Lindau protein interactors and mutations

  • Francesco Tabaro
  • , Giovanni Minervini
  •  & Silvio C. E. Tosatto

• Article
  28 April 2016 | Open Access

  PTIR: Predicted Tomato Interactome Resource

  • Junyang Yue
  • , Wei Xu
  •  & Yongsheng Liu

• Article
  14 April 2016 | Open Access

  DRAMP: a comprehensive data repository of antimicrobial peptides

  • Linlin Fan
  • , Jian Sun
  •  & Hanmei Xu

• Article
  24 March 2016 | Open Access

  dbPAF: an integrative database of protein phosphorylation in animals and fungi

  • Shahid Ullah
  • , Shaofeng Lin
  •  & Yu Xue

• Article
  14 March 2016 | Open Access

  Atomic visualization of a flipped-back conformation of bisected glycans bound to specific lectins

  • Masamichi Nagae
  • , Mayumi Kanagawa
  •  & Yoshiki Yamaguchi

• Article
  10 February 2016 | Open Access

  ApoCanD: Database of human apoptotic proteins in the context of cancer

  • Rahul Kumar
  •  & Gajendra P. S. Raghava

• Article
  08 February 2016 | Open Access

  Multi-tissue transcriptomics for construction of a comprehensive gene resource for the terrestrial snail Theba pisana

  • M. Zhao
  • , T. Wang
  •  & S. F. Cummins

• Article
  27 January 2016 | Open Access

  PMD: A Resource for Archiving and Analyzing Protein Microarray data

  • Zhaowei Xu
  • , Likun Huang
  •  & Sheng-ce Tao

• Article
  25 January 2016 | Open Access

  Essential proteins and possible therapeutic targets of Wolbachia endosymbiont and development of FiloBase-a comprehensive drug target database for Lymphatic filariasis

  • Om Prakash Sharma
  •  & Muthuvel Suresh Kumar

• Article
  11 September 2015 | Open Access

  VirtualMicroscopy: ultra-fast interactive microscopy of gigapixel/terapixel images over internet

  • Ching-Wei Wang
  • , Cheng-Ta Huang
  •  & Chu-Mei Hung

• Article
  10 July 2015 | Open Access

  CGMD: An integrated database of cancer genes and markers

  • Jangampalli Adi Pradeepkiran
  • , Sri Bhashyam Sainath
  •  & Matcha Bhaskar

• Article
  04 March 2013 | Open Access

  Bridging the gap between qualitative and quantitative colocalization results in fluorescence microscopy studies

  • Vadim Zinchuk
  • , Yong Wu
  •  & Olga Grossenbacher-Zinchuk