DNA-binding proteins articles within Scientific Reports

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• Article
  23 January 2024 | Open Access

  Antirepressor specificity is shaped by highly efficient dimerization of the staphylococcal pathogenicity island regulating repressors: Stl repressor dimerization perturbed by dUTPases

  • Kinga Nyíri
  • , Enikő Gál
  •  & Beáta G. Vértessy

• Article
  02 January 2024 | Open Access

  Interactions between the AraC/XylS-like transcriptional activator InvF of Salmonella Typhimurium, the RNA polymerase alpha subunit and the chaperone SicA

  • Daniel Cortés-Avalos
  • , André Borges Farias
  •  & J. Antonio Ibarra

• Article
  26 September 2023 | Open Access

  Decoding the dual recognition mechanism of the glucocorticoid receptor for DNA and RNA: sequence versus shape

  • Johanna Hörberg
  •  & Anna Reymer

• Article
  30 November 2022 | Open Access

  Disease-associated H58Y mutation affects the nuclear dynamics of human DNA topoisomerase IIβ

  • Keiko Morotomi-Yano
  • , Yukiko Hiromoto
  •  & Ken-ichi Yano

• Article
  29 August 2022 | Open Access

  Small molecule-mediated allosteric activation of the base excision repair enzyme 8-oxoguanine DNA glycosylase and its impact on mitochondrial function

  • Gaochao Tian
  • , Steven R. Katchur
  •  & William L. Rumsey

• Article
  14 February 2022 | Open Access

  Bioinformatic and experimental characterization of SEN1998: a conserved gene carried by the Enterobacteriaceae-associated ROD21-like family of genomic islands

  • Alejandro Piña-Iturbe
  • , Guillermo Hoppe-Elsholz
  •  & Susan M. Bueno

• Article
  09 December 2021 | Open Access

  Kinetics of DNA looping by Anabaena sensory rhodopsin transducer (ASRT) by using DNA cyclization assay

  • Jae Jin Lee
  • , Sung Hyun Kim
  •  & Doseok Kim

• Article
  08 July 2021 | Open Access

  Engineering of the genome editing protein Cas9 to slide along DNA

  • Trishit Banerjee
  • , Hiroto Takahashi
  •  & Kiyoto Kamagata

• Article
  29 June 2021 | Open Access

  Constrained G4 structures unveil topology specificity of known and new G4 binding proteins

  • A. Pipier
  • , A. Devaux
  •  & D. Gomez

• Article
  02 November 2020 | Open Access

  Specifically bound BZIP transcription factors modulate DNA supercoiling transitions

  • Johanna Hörberg
  •  & Anna Reymer

• Article
  24 September 2020 | Open Access

  Dependence of DNA length on binding affinity between TrpR and trpO of DNA

  • Nobuo Shimamoto
  • , Mikito Toda
  •  & Jun-ichi Tomizawa

• Article
  04 August 2020 | Open Access

  Systematized reporter assays reveal ZIC protein regulatory abilities are Subclass-specific and dependent upon transcription factor binding site context

  • Jehangir N. Ahmed
  • , Koula E. M. Diamand
  •  & Ruth M. Arkell

• Article
  16 July 2020 | Open Access

  Nucleosome binding by the pioneer transcription factor OCT4

  • Kenta Echigoya
  • , Masako Koyama
  •  & Hitoshi Kurumizaka

• Article
  06 July 2020 | Open Access

  Insights into the structure and function of Est3 from the Hansenula polymorpha telomerase

  • Nikita M. Shepelev
  • , Sofia S. Mariasina
  •  & Vladimir I. Polshakov

• Article
  26 May 2020 | Open Access

  Repression of the lysogenic P_R promoter in bacteriophage TP901-1 through binding of a CI-MOR complex to a composite O_M-O_R operator

  • Margit Pedersen
  • , Jesper Tvenge Neergaard
  •  & Mogens Kilstrup

• Article
  04 March 2020 | Open Access

  Complete Profiling of Methyl-CpG-Binding Domains for Combinations of Cytosine Modifications at CpG Dinucleotides Reveals Differential Read-out in Normal and Rett-Associated States

  • Benjamin C. Buchmuller
  • , Brinja Kosel
  •  & Daniel Summerer

• Article
  28 February 2020 | Open Access

  Insight into DNA substrate specificity of PARP1-catalysed DNA poly(ADP-ribosyl)ation

  • Elie Matta
  • , Assel Kiribayeva
  •  & Alexander A. Ishchenko

• Article
  14 February 2020 | Open Access

  RNA sequence and length contribute to RNA-induced conformational change of TLS/FUS

  • Nesreen Hamad
  • , Tsukasa Mashima
  •  & Masato Katahira

• Article
  17 January 2020 | Open Access

  Liquid-like droplet formation by tumor suppressor p53 induced by multivalent electrostatic interactions between two disordered domains

  • Kiyoto Kamagata
  • , Saori Kanbayashi
  •  & Satoshi Takahashi

• Article
  09 January 2020 | Open Access

  In vivo analysis of FANCD2 recruitment at meiotic DNA breaks in Caenorhabditis elegans

  • Marcello Germoglio
  • , Anna Valenti
  •  & Adele Adamo

• Article
  03 October 2019 | Open Access

  New protein-DNA complexes in archaea: a small monomeric protein induces a sharp V-turn DNA structure

  • Karine Loth
  • , Justine Largillière
  •  & Françoise Paquet

• Article
  30 September 2019 | Open Access

  Investigation of the core binding regions of human Werner syndrome and Fanconi anemia group J helicases on replication protein A

  • Gyuho Yeom
  • , Jinwoo Kim
  •  & Chin-Ju Park

• Article
  23 July 2019 | Open Access

  Modeling the binding of diverse ligands within the Ah receptor ligand binding domain

  • Sara Giani Tagliabue
  • , Samantha C. Faber
  •  & Laura Bonati

• Article
  28 June 2019 | Open Access

  Rational design using sequence information only produces a peptide that binds to the intrinsically disordered region of p53

  • Kiyoto Kamagata
  • , Eriko Mano
  •  & Tomoshi Kameda

• Article
  28 May 2019 | Open Access

  An electrochemiluminescence based assay for quantitative detection of endogenous and exogenously applied MeCP2 protein variants

  • Hannes Steinkellner
  • , Anna Schönegger
  •  & Franco Laccone

• Article
  28 February 2019 | Open Access

  Identification of an XRCC1 DNA binding activity essential for retention at sites of DNA damage

  • Mac C. Y. Mok
  • , Anna Campalans
  •  & Murray S. Junop

• Article
  26 February 2019 | Open Access

  Native mass spectrometry identifies an alternative DNA-binding pathway for BirA from Staphylococcus aureus

  • Jiulia Satiaputra
  • , Louise M. Sternicki
  •  & Steven W. Polyak

• Article
  08 October 2018 | Open Access

  Increasing the distance between two monomers of topoisomerase IIβ under the action of antitumor agent 4β-sulfur-(benzimidazole) 4′-demethylepipodophyllotoxin

  • Lin-Yang Sun
  • , Li-Wen Zhu
  •  & Ya-Jie Tang

• Article
  15 March 2018 | Open Access

  Zinc knuckle of TAF1 is a DNA binding module critical for TFIID promoter occupancy

  • Elizabeth C. Curran
  • , Hui Wang
  •  & Edith H. Wang

• Article
  12 March 2018 | Open Access

  Structural model of human dUTPase in complex with a novel proteinaceous inhibitor

  • Kinga Nyíri
  • , Haydyn D. T. Mertens
  •  & Beáta G. Vértessy

• Article
  12 February 2018 | Open Access

  Plastic roles of phenylalanine and tyrosine residues of TLS/FUS in complex formation with the G-quadruplexes of telomeric DNA and TERRA

  • Keiko Kondo
  • , Tsukasa Mashima
  •  & Masato Katahira

• Article
  17 November 2017 | Open Access

  Ml proteins from Mesorhizobium loti and MucR from Brucella abortus: an AT-rich core DNA-target site and oligomerization ability

  • Ilaria Baglivo
  • , Luciano Pirone
  •  & Paolo Vincenzo Pedone

• Article
  28 July 2017 | Open Access

  Mycobacterial DNA-binding protein 1 is critical for long term survival of Mycobacterium smegmatis and simultaneously coordinates cellular functions

  • Shymaa Enany
  • , Yutaka Yoshida
  •  & Sohkichi Matsumoto

• Article
  25 July 2017 | Open Access

  Structural analysis of the regulatory mechanism of MarR protein Rv2887 in M. tuberculosis

  • Yun-Rong Gao
  • , De-Feng Li
  •  & Li-Jun Bi

• Article
  20 June 2017 | Open Access

  Mutations in human AID differentially affect its ability to deaminate cytidine and 5-methylcytidine in ssDNA substrates in vitro

  • Lucyna Budzko
  • , Paulina Jackowiak
  •  & Marek Figlerowicz

• Article
  24 May 2017 | Open Access

  Functional characterization of the meiosis-specific DNA double-strand break inducing factor SPO-11 from C. elegans

  • Hsin-Yi Yeh
  • , Sheng-Wei Lin
  •  & Peter Chi

• Article
  21 April 2017 | Open Access

  Structure-function analysis of the DNA-binding domain of a transmembrane transcriptional activator

  • Andreas Schlundt
  • , Sophie Buchner
  •  & Michael Sattler

• Article
  06 April 2017 | Open Access

  Structural Insight into the Specific DNA Template Binding to DnaG primase in Bacteria

  • Yingqin Zhou
  • , Hao Luo
  •  & Ganggang Wang

• Article
  04 April 2017 | Open Access

  Identification of autoreactive B cells with labeled nucleosomes

  • Vincent Gies
  • , Alain Wagner
  •  & Pauline Soulas-Sprauel

• Article
  27 March 2017 | Open Access

  Heterologous protein-DNA interactions lead to biased allelic expression of circadian clock genes in interspecific hybrids

  • Danny W-K. Ng
  • , Helen H. Y. Chen
  •  & Z. Jeffrey Chen

• Article
  24 March 2017 | Open Access

  The cellular protein hnRNP A2/B1 enhances HIV-1 transcription by unfolding LTR promoter G-quadruplexes

  • Matteo Scalabrin
  • , Ilaria Frasson
  •  & Sara N. Richter

• Article
  31 January 2017 | Open Access

  The intervening domain from MeCP2 enhances the DNA affinity of the methyl binding domain and provides an independent DNA interaction site

  • Rafael Claveria-Gimeno
  • , Pilar M. Lanuza
  •  & Adrian Velazquez-Campoy

• Article
  17 January 2017 | Open Access

  New Insights into Cooperative Binding of Homeodomain Transcription Factors PREP1 and PBX1 to DNA

  • Chiara Zucchelli
  • , Elena Ferrari
  •  & Chiara Bruckmann

• Article
  11 January 2017 | Open Access

  Nucleoplasmin-like domain of FKBP39 from Drosophila melanogaster forms a tetramer with partly disordered tentacle-like C-terminal segments

  • Małgorzata Kozłowska
  • , Aneta Tarczewska
  •  & Andrzej Ożyhar

• Article
  17 November 2016 | Open Access

  The archaeal “7 kDa DNA-binding” proteins: extended characterization of an old gifted family

  • Valentina Kalichuk
  • , Ghislaine Béhar
  •  & Frédéric Pecorari

• Article
  04 November 2016 | Open Access

  Enhancing succinic acid biosynthesis in Escherichia coli by engineering its global transcription factor, catabolite repressor/activator (Cra)

  • Li-Wen Zhu
  • , Shi-Tao Xia
  •  & Ya-Jie Tang

• Article
  03 November 2016 | Open Access

  Structural basis of the high thermal stability of the histone-like HU protein from the mollicute Spiroplasma melliferum KC3

  • Konstantin M. Boyko
  • , Tatiana V. Rakitina
  •  & Vladimir O. Popov

• Article
  06 October 2016 | Open Access

  Characterization of the DNA dependent activation of human ARTD2/PARP2

  • Ezeogo Obaji
  • , Teemu Haikarainen
  •  & Lari Lehtiö

• Article
  07 September 2016 | Open Access

  Aggregation tendencies in the p53 family are modulated by backbone hydrogen bonds

  • Elio A. Cino
  • , Iaci N. Soares
  •  & Jerson L. Silva

• Article
  08 August 2016 | Open Access

  Structural insight into β-Clamp and its interaction with DNA Ligase in Helicobacter pylori

  • Preeti Pandey
  • , Khaja Faisal Tarique
  •  & Samudrala Gourinath