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| Open AccessStructure of the pentameric ligand-gated ion channel ELIC cocrystallized with its competitive antagonist acetylcholine
The pentameric ligand gated ion channel fromErwinia chrysanthemi(ELIC) is similar in structure to the nicotinic acetylcholine receptor, a member of the Cys-loop receptor family. This study reports the crystal structure of ELIC bound to acetylcholine and shows that acetylcholine is a competitive antagonist of ELIC.
- Jianjun Pan
- , Qiang Chen
- & Pei Tang
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RUNX1-induced silencing of non-muscle myosin heavy chain IIB contributes to megakaryocyte polyploidization
Megakaryocytes undergo polyploidization prior to forming platelets but this process is poorly characterised. In this study, non-muscle myosin IIB heavy chain, that localizes to the contractile ring during mitosis, is shown to be silenced prior to polyploidization in a RUNX1-dependent manner.
- Larissa Lordier
- , Dominique Bluteau
- & Yunhua Chang
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Article
| Open Accessγ-Glutamylcysteine detoxifies reactive oxygen species by acting as glutathione peroxidase-1 cofactor
Glutathione's key role as a modulator of reactive oxygen species levels has recently been challenged. Quintana-Cabreraet al. now provide in vivoevidence supporting an antioxidant and neuroprotective function for γ-glutamylcysteine, which replaces glutathione by acting as glutathione peroxidase-1 cofactor.
- Ruben Quintana-Cabrera
- , Seila Fernandez-Fernandez
- & Juan P. Bolaños
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Power laws reveal phase transitions in landscape controls of fire regimes
Understanding the environmental controls of past wildfires is difficult due to the lack of records of weather or vegetation. This study shows, using cross-scale analysis, how power laws associated with fire-event time series can identify critical thresholds in landscape dynamics in a rapidly changing climate.
- Donald McKenzie
- & Maureen C. Kennedy
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Dimensional and temporal controls of three-dimensional cell migration by zyxin and binding partners
Molecular and oscillations are common in biology, but periodic cell migrations have not been observed. Fraleyet al. report regular, periodic migrations of cells along tracks generated inside 3D matrices, and show that these 1D oscillations are controlled by zyxin and its binding partners α-actinin and p130Cas.
- Stephanie I. Fraley
- , Yunfeng Feng
- & Denis Wirtz
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Melanoma whole-exome sequencing identifies V600EB-RAF amplification-mediated acquired B-RAF inhibitor resistance
B-RAF is mutated in a large proportion of melanomas, and the first small molecule inhibitor has recently been approved for melanoma treatment. Here, by exome sequencing melanoma samples, Shi and colleagues show that B-RAF is amplified in tumours that have acquired resistance to the B-RAF inhibitor vemurafenib.
- Hubing Shi
- , Gatien Moriceau
- & Roger S. Lo
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Host factors dictate control of viral replication in two HIV-1 controller/chronic progressor transmission pairs
Human immunodeficiency virus patients who maintain low levels of virus or have undetectable levels of virus exist. In this study, the HIV found in two of these patients is shown to replicatein vitro, suggesting that host factors have a role in suppressing virus levels.
- Robert W. Buckheit III
- , Tracy G. Allen
- & Joel N. Blankson
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The tRNA methyltransferase NSun2 stabilizes p16INK4 mRNA by methylating the 3′-untranslated region of p16
The expression of the tumour suppressor p16 is frequently lost in cancer. Zhanget al. show in cultured cells that p16 mRNA levels are stabilised by methylation of the 3′-untranslated region by the tRNA methyltransferase NSun2, revealing a new mechanism for regulating p16.
- Xiaotian Zhang
- , Zhenyun Liu
- & Wengong Wang
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Article
| Open AccessAcquisition of aluminium tolerance by modification of a single gene in barley
Barley is an important food crop that has been adapted to grow on acidic soils that often contain toxic soluble aluminium. In this study, an insertion in the upstream region of a citrate transporter is shown to confer resistance of barley to aluminium toxicity and is found in aluminium-tolerant barley accessions.
- Miho Fujii
- , Kengo Yokosho
- & Jian Feng Ma
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Network physiology reveals relations between network topology and physiological function
Humans are a network of complex physiological systems, but quantifying these diverse systems is a challenge. This study presents a method to show that each physiological state is characterized by a specific network structure, demonstrating a connection between network topology and function.
- Amir Bashan
- , Ronny P. Bartsch
- & Plamen Ch. Ivanov
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The GOLD domain-containing protein TMED7 inhibits TLR4 signalling from the endosome upon LPS stimulation
TLRs have a role in innate immunity and TLR4 recognizes lipopolysaccharide on the cell wall of Gram-negative bacteria. Now, Doyle and colleagues show that a transmembrane protein TMED7, similar to aDrosophilahomologue, can negatively control TLR4 signalling, suggesting a conserved role in innate immunity.
- Sarah L. Doyle
- , Harald Husebye
- & Anne F. McGettrick
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Mapping of H3N2 influenza antigenic evolution in China reveals a strategy for vaccine strain recommendation
Influenza vaccines are updated frequently to accommodate changing influenza antigenicity. Here, the authors develop a new computational method for predicting the antigenicity of H3N2 influenza strains based on the HA sequence.
- Xiangjun Du
- , Libo Dong
- & Taijiao Jiang
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Article
| Open AccessTelomeres are favoured targets of a persistent DNA damage response in ageing and stress-induced senescence
Irreparable DNA damage leads to apoptosis or senescence. Hewittet al. show that, in response to genotoxic or oxidative stress, DNA damage occurs predominantly at telomere associated foci, which accumulate with age in vivo, irrespective of telomerase activity.
- Graeme Hewitt
- , Diana Jurk
- & João F. Passos
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The impact of asymmetrical light input on cerebral hemispheric specialization and interhemispheric cooperation
Lateralization of the brain can provide evolutionary advantages by enhancing behavioural and cognitive capacities. Manns and Römling confirm that lateralized environmental experience in pigeons induces hemispheric specialization and show that this affects the efficiency of interhemispheric crosstalk.
- Martina Manns
- & Juliane Römling
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Perturbation of sodium channel structure by an inherited Long QT Syndrome mutation
Perturbation of the cardiac voltage-gated sodium channel, NaV1.5, by drugs or inherited mutation can underlie and trigger cardiac arrhythmias. Here, the role of the NaV1.5 carboxy terminus in channel inactivation is investigated, and structural details of an arrhythmia associated H6 mutant are reported.
- Ian W. Glaaser
- , Jeremiah D. Osteen
- & Robert S. Kass
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Article
| Open AccessMale pygmy hippopotamus influence offspring sex ratio
Some animal populations are able to shift their birth sex ratio from the expected unity. This study shows, using fluorescencein situhybridization, that in a captive population of pygmy hippopotamus the males appear to be able to adjust the ratio of X- and Y-chromosome-bearing spermatozoa in their ejaculates.
- Joseph Saragusty
- , Robert Hermes
- & Thomas B. Hildebrandt
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Three-dimensional imaging of single nanotube molecule endocytosis on plasmonic substrates
Imaging and tracking the motion of single molecules on cell plasma membranes requires high spatial resolution in three dimensions. Honget al. develop a plasmonic ruler based on the fluorescence enhancement of carbon nanotubes on a gold plasmonic substrate, allowing the observation of nanotube endocytosis in three dimensions.
- Guosong Hong
- , Justin Z. Wu
- & Hongjie Dai
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Article
| Open AccessNew insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing
The Tyrolean Iceman is 5,300 years old and his mitochondrial genome has been previously sequenced. This study reports the full genome sequence of the Iceman and reveals that he probably had brown eyes, was at risk for coronary disease and may have been infected with the pathogen Lyme borreliosis.
- Andreas Keller
- , Angela Graefen
- & Albert Zink
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Interpolar microtubules are dispensable in fission yeast meiosis II
Interpolar microtubules were thought to be indispensable for eukaryotic cell division. Here, Akera and colleagues demonstrate that the second division of meiosis in yeast can occur in the absence of interpolar microtubules, and identify the forespore membrane as a force producing structure in cell division.
- Takashi Akera
- , Masamitsu Sato
- & Masayuki Yamamoto
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Rats track odour trails accurately using a multi-layered strategy with near-optimal sampling
Animals track odour trails to find food, a mate or to steer clear of danger. Bhalla and colleagues combine behavioural and physiological measurements to show that rats can track surface-borne odours with near-optimal sampling and are able to predict the path direction on encountering a bifurcation.
- Adil Ghani Khan
- , Manaswini Sarangi
- & Upinder Singh Bhalla
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Article
| Open AccessIntracellular temperature mapping with a fluorescent polymeric thermometer and fluorescence lifetime imaging microscopy
Intracellular temperature mapping has not previously been achieved. Now, a fluorescent polymeric thermometer has been developed that can be used in combination with fluorescence-lifetime imaging microscopy to allow thermometry with spatial and temperature resolutions of 200 nm and 0.18–0.58 ° C.
- Kohki Okabe
- , Noriko Inada
- & Seiichi Uchiyama
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Ultra-rapid access to words in the brain
The exact speed of spoken word processing by our brain is still unknown. Using MEG to compare brain responses to words and pseudowords, MacGregoret al. show that lexical processing occurs 50 ms after acoustic information is presented, suggesting that our brain's access to word information is near-instantaneous.
- Lucy J MacGregor
- , Friedemann Pulvermüller
- & Yury Shtyrov
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Article
| Open AccessDraft genome sequence and genetic transformation of the oleaginous alga Nannochloropsis gaditana
Algae show much promise in the production of biofuels owing to their high photoautotrophic biomass and lipid production rates. In this study, the draft genome ofNannochloropsis gaditanaCCMP526 and a method for the transformation of this alga are reported, facilitating the investigation of lipid synthesis and biofuel production.
- Randor Radakovits
- , Robert E. Jinkerson
- & Matthew C. Posewitz
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Article
| Open AccessEvidence for the stress-linked immunocompetence handicap hypothesis in humans
Testosterone-dependent traits are thought to give an honest signal of male immune function, however, the exact effects remain unclear. This study shows a positive relationship between testosterone, facial attractiveness and the immune response to a hepatitis B vaccine, which is moderated by naturally co-occurring cortisol.
- Markus J. Rantala
- , Fhionna R. Moore
- & Indrikis Krams
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Article
| Open AccessStochastic signalling rewires the interaction map of a multiple feedback network during yeast evolution
GALgenes enhance their own transcription via the transcription factor Gal4p, and the number of Galp4 sites in a promoter is expected to strengthen the feedback. In this study, Hsuet al. show that instead the feedback loops are activated by genes that have frequent bursts of expression and fast RNA decay kinetics.
- Chieh Hsu
- , Simone Scherrer
- & Attila Becskei
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Article
| Open AccessAn intrinsically labile α-helix abutting the BCL9-binding site of β-catenin is required for its inhibition by carnosic acid
β-Catenin can be oncogenic but finding inhibitors has been a challenge. Here, five compounds are identified, which attenuate transcriptional β-catenin outputs in colorectal cancer cells, and the response to one of them is shown to require an intrinsically labile α-helix next to the BCL9-binding site in β-catenin.
- Marc de la Roche
- , Trevor J. Rutherford
- & Mariann Bienz
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miR-196b directly targets both HOXA9/MEIS1 oncogenes and FAS tumour suppressor in MLL-rearranged leukaemia
HOX9AandMEIS1are key oncogenes in MLL-rearranged leukaemia. miRNA-196b is shown here to directly suppress their expression and delay MLL-fusion-mediated leukaemia, but to also cause an aggressive leukaemia phenotype when expressed ectopically, suggesting that it targets tumour suppressors as well.
- Zejuan Li
- , Hao Huang
- & Jianjun Chen
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Sensing of mammalian IL-17A regulates fungal adaptation and virulence
It is unclear whether pathogens can advantageously exploit the host's immune response. UsingCandida albicans, the authors show that host IL-17A binds to the fungi and induces nutrient starvation and autophagy, which eventually leads to enhanced biofilm formation and resistance to the hosts' defence.
- Teresa Zelante
- , Rossana G. Iannitti
- & Luigina Romani
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Article
| Open AccessThe dynamic stator stalk of rotary ATPases
The peripheral stalks of rotary ATPases counteract torque generated by rotation of the central stalk during ATP synthesis or hydrolysis. Stewartet al.report the crystal structure of an A-type ATPase/synthase peripheral stalk and identify bending and twisting motions that permit the radial wobbling of the headgroup.
- Alastair G. Stewart
- , Lawrence K. Lee
- & Daniela Stock
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Humans and chimpanzees attend differently to goal-directed actions
Humans understand actions by making inferences about the person's intentions. Comparing humans with chimpanzees, this study shows that humans refer to the actors' faces more than chimpanzees do when observing goal-directed actions, indicating that humans view actions by integrating information from the actor.
- Masako Myowa-Yamakoshi
- , Céline Scola
- & Satoshi Hirata
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Article
| Open AccessUnique domain appended to vertebrate tRNA synthetase is essential for vascular development
Seryl-tRNA synthetase is important in vasculogenesis and contains a unique domain at its C-terminus. In this study, the unique domain is shown to target the protein to the nucleus, block expression ofvegfaand be essential for vasculogenesis in zebrafish.
- Xiaoling Xu
- , Yi Shi
- & Xiang-Lei Yang
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CPEB-mediated ZO-1 mRNA localization is required for epithelial tight-junction assembly and cell polarity
Zonal occludens and claudin form tight junctions near the apical surface of cells and are important in polarized epithelia. In this study, the translational regulatory sequence-specific RNA binding protein CPEB is shown to be required for the correct localization of zona occluden 1 mRNA in mammary epithelial cells.
- Kentaro Nagaoka
- , Tsuyoshi Udagawa
- & Joel D. Richter
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Article
| Open AccessThe dynamic relationships between the three events that release individual Na+ ions from the Na+/K+-ATPase
The Na+/K+-ATPase pump exports three Na+ ions for the exchange of two K+ ions, and three transient current components have been associated with Na+ binding and release. Now, these three components are found to be tightly correlated confirming that the binding and release of Na+ions is sequential.
- David C. Gadsby
- , Francisco Bezanilla
- & Miguel Holmgren
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Article
| Open AccessDynamics of anterior–posterior axis formation in the developing mouse embryo
Detailed analysis of axis development in mouse embryo has been limited. Morriset al. developed an in vitroculture technique that enables the real-time observation of an anterior visceral endoderm formation and show that cell marker asymmetry within the AVE subdomain dictates the direction of the AVE migration.
- Samantha A. Morris
- , Seema Grewal
- & Magdalena Zernicka-Goetz
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Homeostatic neurogenesis in the adult hippocampus does not involve amplification of Ascl1high intermediate progenitors
Neural stem cells generate neurons in the adult hippocampus, but the dynamics of neuron production remain unclear. This study shows that stem cells produce type-2a progenitors, which do not expand as previously thought, but rather generate amplifying immature neuroblasts.
- Sebastian Lugert
- , Miriam Vogt
- & Verdon Taylor
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Regulation of histone modification and chromatin structure by the p53–PADI4 pathway
PADI4 is an enzyme that converts arginine residues to citrulline. Here, Tanikawa and colleagues show that, in response to DNA damage, histone H4 and Lamin C are citrullinated in a p53 and PADI4-dependent manner andPadi4-dependent manner and Padi4 null mice are resistant to radiation-induced apoptosis in the thymus.
- Chizu Tanikawa
- , Martha Espinosa
- & Koichi Matsuda
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Article
| Open AccessPPARγ contributes to PKM2 and HK2 expression in fatty liver
Molecular factors, regulating the expression of specific glycolytic enzymes that favour biosynthetic processes, have remained unknown. Panasyuket al. identify PPARγ as a novel transcription factor turning on pyruvate kinase M2 and hexokinase 2, which are frequently upregulated in pathophysiological growth.
- Ganna Panasyuk
- , Catherine Espeillac
- & Mario Pende
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Article
| Open AccessInterferon-γ-producing immature myeloid cells confer protection against severe invasive group A Streptococcus infections
Myeloid cells are important in the response to severe infection by invasiveStreptococcusGroup A. In this study, a distinct population of immature myeloid cells with ring shaped nuclei that produce interferon-γ are shown to be important for protection of mice against the early stages of invasive infection.
- Takayuki Matsumura
- , Manabu Ato
- & Kazuo Kobayashi
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Spatial coordination between cell and nuclear shape within micropatterned endothelial cells
Actin filaments are involved in the modulation of nuclear shape and function, but mechanistic understanding of these processes is lacking. Versaevelet al. show that orientation and deformation of the nucleus are regulated by lateral compressive forces driven by tension in central actomyosin fibres.
- Marie Versaevel
- , Thomas Grevesse
- & Sylvain Gabriele
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Emergent neutrality leads to multimodal species abundance distributions
Empirical data suggest that species abundance distributions can have multiple modes, which is not predicted by existing theories. This study shows that the multimodal pattern is consistent with emergent neutrality, suggesting this theory could have a role in shaping natural communities.
- Remi Vergnon
- , Egbert H. van Nes
- & Marten Scheffer
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Article
| Open AccessModification of the carboxy-terminal flanking region of a universal influenza epitope alters CD4+ T-cell repertoire selection
Epitopes presented by MHC-II molecules bind to T-cell receptors to activate CD4+ T cells. In this study, changes in the carboxy-terminal region of the influenza hemagglutinin epitope HA305-320alters the strength of binding to the T-cell receptor, thus modulating T-cell receptor usage and activation.
- David K. Cole
- , Kathleen Gallagher
- & Andrew Godkin
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Parkin controls dopamine utilization in human midbrain dopaminergic neurons derived from induced pluripotent stem cells
Mutations in parkin, an ubiquitin ligase, cause an inherited form of Parkinson's disease. Here, Jianget al. generate induced pluripotent stem cells from two patients with parkin mutations and find that neurons derived from the stem cells have defects in dopamine release, dopamine uptake and oxidative metabolism.
- Houbo Jiang
- , Yong Ren
- & Jian Feng
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Article
| Open AccessImperfect interface of Beclin1 coiled-coil domain regulates homodimer and heterodimer formation with Atg14L and UVRAG
Beclin1 is a key regulator of VPS34-related processes, including autophagy. Liet al. solve the crystal structure of Beclin 1 CC domain, an antiparallel dimer that is rendered metastable by a series of a-d' pairings, which determines its ability to form distinct heterodimers either with Atg14L or UVRAG.
- Xiaohua Li
- , Liqiang He
- & Yanxiang Zhao
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EphB3 suppresses non-small-cell lung cancer metastasis via a PP2A/RACK1/Akt signalling complex
The role of ephrin receptors in tumour development and progression has remained controversial. Liet al. show that kinase activation of ephrin-B3 inhibits non-small-cell lung cancer migration both in vitro and in vivo, which depends on a novel interacting partner, RACK 1, in a ternary complex with PP2A and Akt.
- Guo Li
- , Xiao-Dan Ji
- & Dong Xie
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Rapid microbial response to the presence of an ancient relic in the Antarctic Dry Valleys
It is thought that turnover in soil microbiota occurs very slowly in the Antarctic Dry Valleys due to the extreme cold and aridity. Now, Tiaoet al. show that a transformation of microbial communities can happen in a matter of years in soils altered by the presence of a mummified seal.
- Grace Tiao
- , Charles K. Lee
- & S. Craig Cary
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Article
| Open AccessLoss of flight promotes beetle diversification
The loss of flight in some insect lineages may promote allopatric differentiation and result in a high speciation rate. Here, using the carrion beetle, loss of flight is shown to accelerate allopatric speciation with higher genetic differentiation than for flight-capable species.
- Hiroshi Ikeda
- , Masaaki Nishikawa
- & Teiji Sota
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Article
| Open AccessActivation of TRPC6 channels is essential for lung ischaemia–reperfusion induced oedema in mice
The signalling cascade involved in lung ischaemia–reperfusion-induced oedema is poorly understood. Using knockout mice, Weissmannet al. propose a model in which reactive oxygen species production by endothelial NOX2 leads to phospholipase C-γ activation, DAG kinase inhibition and subsequent TRPC6 activation.
- Norbert Weissmann
- , Akylbek Sydykov
- & Alexander Dietrich
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Article
| Open AccessThree-dimensional analysis of ribonucleoprotein complexes in influenza A virus
The influenza A virus genome consists of eight RNA segments, which permits genetic reassortment and contributes to the emergence of novel strains with pandemic potential. Here, electron tomography is used to study the three-dimensional structure of ribonucleoprotein complexes within progeny virions.
- Takeshi Noda
- , Yukihiko Sugita
- & Yoshihiro Kawaoka
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New evidence on the colour and nature of the isolated Archaeopteryx feather
Archaeopteryxcombined features of reptiles and birds, but the colour of its feathers has remained unclear. In this study, based on data from fossilized colour-imparting melanosomes, an isolated feather specimen fromArchaeopteryxis predicted to be black, providing clues to its plumage colour and function.
- Ryan M. Carney
- , Jakob Vinther
- & Jörg Ackermann
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