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| Open AccessA simple strategy guides the complex metabolic regulation in Escherichia coli
- Giuseppe Facchetti
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| Open AccessA systems biology pipeline identifies new immune and disease related molecular signatures and networks in human cells during microgravity exposure
- Sayak Mukhopadhyay
- , Rohini Saha
- & Sangram Bagh
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| Open AccessGlucose becomes one of the worst carbon sources for E.coli on poor nitrogen sources due to suboptimal levels of cAMP
- Anat Bren
- , Junyoung O. Park
- & Uri Alon
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| Open AccessThe interactome of Streptococcus pneumoniae and its bacteriophages show highly specific patterns of interactions among bacteria and their phages
- Rachelle Mariano
- , Stefan Wuchty
- & Peter Uetz
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| Open AccessMetabolic flux profiling of MDCK cells during growth and canine adenovirus vector production
- Nuno Carinhas
- , Daniel A. M. Pais
- & Ana P. Teixeira
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| Open AccessIntegration of Metabolic Modeling with Gene Co-expression Reveals Transcriptionally Programmed Reactions Explaining Robustness in Mycobacterium tuberculosis
- Bhanwar Lal Puniya
- , Deepika Kulshreshtha
- & Srinivasan Ramachandran
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| Open AccessAge-associated metabolic dysregulation in bone marrow-derived macrophages stimulated with lipopolysaccharide
- Fan Fei
- , Keith M. Lee
- & Dawn M. E. Bowdish
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| Open AccessGlobal metabolic analyses identify key differences in metabolite levels between polymyxin-susceptible and polymyxin-resistant Acinetobacter baumannii
- Mohd Hafidz Mahamad Maifiah
- , Soon-Ee Cheah
- & Jian Li
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| Open AccessNoise Reduction in Complex Biological Switches
- Luca Cardelli
- , Attila Csikász-Nagy
- & Max Tschaikowski
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| Open AccessGeneration of 2,000 breast cancer metabolic landscapes reveals a poor prognosis group with active serotonin production
- Vytautas Leoncikas
- , Huihai Wu
- & Nick J. Plant
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| Open AccessProtein-protein interaction networks identify targets which rescue the MPP+ cellular model of Parkinson’s disease
- Harriet Keane
- , Brent J. Ryan
- & Richard Wade-Martins
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| Open AccessThree plasma metabolite signatures for diagnosing high altitude pulmonary edema
- Li Guo
- , Guangguo Tan
- & Qian Ren
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| Open AccessRevisiting the chlorophyll biosynthesis pathway using genome scale metabolic model of Oryza sativa japonica
- Ankita Chatterjee
- & Sudip Kundu
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| Open AccessExtensive weight loss reveals distinct gene expression changes in human subcutaneous and visceral adipose tissue
- Adil Mardinoglu
- , John T. Heiker
- & Matthias Blüher
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| Open AccessReporter pathway analysis from transcriptome data: Metabolite-centric versus Reaction-centric approach
- Tunahan Çakır
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| Open AccessDYVIPAC: an integrated analysis and visualisation framework to probe multi-dimensional biological networks
- Lan K. Nguyen
- , Andrea Degasperi
- & Boris N. Kholodenko
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| Open AccessLK6/Mnk2a is a new kinase of alpha synuclein phosphorylation mediating neurodegeneration
- Shiqing Zhang
- , Jiang Xie
- & Tieqiao Wen
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| Open AccessNon-monotonic dynamics and crosstalk in signaling pathways and their implications for pharmacology
- Roeland van Wijk
- , Sander J. Tans
- & Alireza Mashaghi
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| Open AccessAmino Acid Flux from Metabolic Network Benefits Protein Translation: the Role of Resource Availability
- Xiao-Pan Hu
- , Yi Yang
- & Bin-Guang Ma
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| Open AccessUnraveling the molecular architecture of a G protein-coupled receptor/β-arrestin/Erk module complex
- Thomas Bourquard
- , Flavie Landomiel
- & Anne Poupon
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| Open AccessAtlas of tissue renin-angiotensin-aldosterone system in human: A transcriptomic meta-analysis
- Ali Nehme
- , Catherine Cerutti
- & Giampiero Bricca
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| Open AccessNotes on stochastic (bio)-logic gates: computing with allosteric cooperativity
- Elena Agliari
- , Matteo Altavilla
- & Evgeny Katz
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| Open AccessAnalysis of the metabolome of Anopheles gambiae mosquito after exposure to Mycobacterium ulcerans
- J. Charles Hoxmeier
- , Brice D. Thompson
- & Karen M. Dobos
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| Open AccessNetwork-assisted genetic dissection of pathogenicity and drug resistance in the opportunistic human pathogenic fungus Cryptococcus neoformans
- Hanhae Kim
- , Kwang-Woo Jung
- & Insuk Lee
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| Open AccessProteins interacting with cloning scars: a source of false positive protein-protein interactions
- Charles A. S. Banks
- , Gina Boanca
- & Michael P. Washburn
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| Open AccessIdentifying anti-growth factors for human cancer cell lines through genome-scale metabolic modeling
- Pouyan Ghaffari
- , Adil Mardinoglu
- & Jens Nielsen
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| Open AccessSystems approach for the selection of micro-RNAs as therapeutic biomarkers of anti-EGFR monoclonal antibody treatment in colorectal cancer
- Avisek Deyati
- , Shweta Bagewadi
- & Natalia Novac
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| Open AccessGlycomic Signatures on Serum IgGs for Prediction of Postvaccination Response
- Jing-Rong Wang
- , Wen-Da Guan
- & Zhi-Hong Jiang
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| Open AccessProtein-protein Interaction Networks of E. coli and S. cerevisiae are similar
- S. Wuchty
- & Peter Uetz
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| Open AccessA gene expression signature-based approach reveals the mechanisms of action of the Chinese herbal medicine berberine
- Kuen-Haur Lee
- , Hsiang-Ling Lo
- & Pei-Ming Yang
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| Open AccessRandomness and preserved patterns in cancer network
- Aparna Rai
- , A. Vipin Menon
- & Sarika Jalan
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| Open AccessA design principle underlying the paradoxical roles of E3 ubiquitin ligases
- Daewon Lee
- , Minjin Kim
- & Kwang-Hyun Cho
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| Open AccessNegative Interactions and Feedback Regulations Are Required for Transient Cellular Response
- Mohammad Mobashir
- , Thati Madhusudhan
- & Burkhart Schraven
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| Open AccessMetabolic and protein interaction sub-networks controlling the proliferation rate of cancer cells and their impact on patient survival
- Amir Feizi
- & Sergio Bordel
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| Open AccessExperimental evidence suggests the existence of evolutionary conserved global operation principles governing microbial metabolism
- Sergio Bordel
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| Open AccessUnderstanding the interactions between bacteria in the human gut through metabolic modeling
- Saeed Shoaie
- , Fredrik Karlsson
- & Jens Nielsen
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| Open AccessAttachment-regulated signaling networks in the fibroblast-populated 3D collagen matrix
- Mark A. Carlson
- , Lynette M. Smith
- & James D. Eudy
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| Open AccessTranscriptome sequencing of neonatal thymic epithelial cells
- Charles St-Pierre
- , Sylvie Brochu
- & Claude Perreault