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| Open AccessAn Integrated Local Classification Model of Predicting Drug-Drug Interactions via Dempster-Shafer Theory of Evidence
- Jian-Yu Shi
- , Xue-Qun Shang
- & Siu-Ming Yiu
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| Open AccessMetabolic network-based predictions of toxicant-induced metabolite changes in the laboratory rat
- Venkat R. Pannala
- , Martha L. Wall
- & Anders Wallqvist
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| Open AccessSearching the overlap between network modules with specific betweeness (S2B) and its application to cross-disease analysis
- Marina L. Garcia-Vaquero
- , Margarida Gama-Carvalho
- & Francisco R. Pinto
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| Open AccessValidating Antibodies for Quantitative Western Blot Measurements with Microwestern Array
- Rick J. Koch
- , Anne Marie Barrette
- & Marc R. Birtwistle
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| Open AccessMetabolomic and lipidomic profile in men with obstructive sleep apnoea: implications for diagnosis and biomarkers of cardiovascular risk
- Adriana Lebkuchen
- , Valdemir M. Carvalho
- & Luciano F. Drager
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| Open AccessChemDIS-Mixture: an online tool for analyzing potential interaction effects of chemical mixtures
- Chun-Wei Tung
- , Chia-Chi Wang
- & Pinpin Lin
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| Open AccessComputing Mathematical Functions using DNA via Fractional Coding
- Sayed Ahmad Salehi
- , Xingyi Liu
- & Keshab K. Parhi
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| Open AccessA physical model of cell metabolism
- Jorge Fernandez-de-Cossio-Diaz
- & Alexei Vazquez
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| Open AccessDramatic dysbalancing of the Wnt pathway in breast cancers
- Alexey Koval
- & Vladimir L. Katanaev
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| Open AccessA side-effect free method for identifying cancer drug targets
- Md. Izhar Ashraf
- , Seng-Kai Ong
- & Chandrajit Lahiri
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| Open AccessMetabolomics and pathway analyses to characterize metabolic alterations in pregnant dairy cows on D 17 and D 45 after AI
- Y. S. Guo
- & J. Z. Tao
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| Open AccessIdentification of the functional pathways altered by placental cell exposure to high glucose: lessons from the transcript and metabolite interactome
- C. H. Hulme
- , A. Stevens
- & J. E. Myers
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| Open AccessAnalyzing the genes related to nicotine addiction or schizophrenia via a pathway and network based approach
- Ying Hu
- , Zhonghai Fang
- & Ju Wang
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| Open AccessDynamic modelling of the mTOR signalling network reveals complex emergent behaviours conferred by DEPTOR
- Thawfeek M. Varusai
- & Lan K. Nguyen
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| Open AccessComputational modelling of meiotic entry and commitment
- Tanvi Bhola
- , Orsolya Kapuy
- & P. K. Vinod
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| Open AccessUnbiased Quantitative Proteomics Reveals a Crucial Role of the Allergen Context for the Activation of Human Dendritic Cells
- L. Strasser
- , H.-H. Dang
- & C. G. Huber
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| Open AccessDynamic domain arrangement of CheA-CheY complex regulates bacterial thermotaxis, as revealed by NMR
- Yuichi Minato
- , Takumi Ueda
- & Ichio Shimada
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| Open AccessComprehensive functional enrichment analysis of male infertility
- Seyed Morteza Razavi
- , Marjan Sabbaghian
- & Ali Salehzadeh-Yazdi
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| Open AccessNetwork pharmacology exploration reveals endothelial inflammation as a common mechanism for stroke and coronary artery disease treatment of Danhong injection
- Ming Lyu
- , Chun-Lin Yan
- & Yan Zhu
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| Open AccessLimits of aerobic metabolism in cancer cells
- Jorge Fernandez-de-Cossio-Diaz
- & Alexei Vazquez
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| Open AccessModelling compartmentalization towards elucidation and engineering of spatial organization in biochemical pathways
- Govind Menon
- , Chinedu Okeke
- & J. Krishnan
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| Open AccessFatty Acid Concentration and Phase Transitions Modulate Aβ Aggregation Pathways
- Pratip Rana
- , Dexter N. Dean
- & Preetam Ghosh
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| Open AccessRevealing the mystery of metabolic adaptations using a genome scale model of Leishmania infantum
- Abhishek Subramanian
- & Ram Rup Sarkar
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| Open AccessTrans-omics approaches used to characterise fish nutritional biorhythms in leopard coral grouper (Plectropomus leopardus)
- Miyuki Mekuchi
- , Kenji Sakata
- & Jun Kikuchi
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| Open AccessTranscriptional hallmarks of cancer cell lines reveal an emerging role of branched chain amino acid catabolism
- Ieva Antanavičiūtė
- , Valeryia Mikalayeva
- & Sergio Bordel
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| Open AccessUse of Microarray Datasets to generate Caco-2-dedicated Networks and to identify Reporter Genes of Specific Pathway Activity
- Prashanna Balaji Venkatasubramanian
- , Gamze Toydemir
- & Jurriaan J. Mes
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| Open AccessSelection of complementary foods based on optimal nutritional values
- Partho Sen
- , Adil Mardinogulu
- & Jens Nielsen
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| Open AccessNetwork model predicts that CatSper is the main Ca2+ channel in the regulation of sea urchin sperm motility
- Jesús Espinal-Enríquez
- , Daniel Alejandro Priego-Espinosa
- & Gustavo Martínez-Mekler
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| Open AccessReconstruction of Complex Directional Networks with Group Lasso Nonlinear Conditional Granger Causality
- Guanxue Yang
- , Lin Wang
- & Xiaofan Wang
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| Open AccessIMGMD: A platform for the integration and standardisation of In silico Microbial Genome-scale Metabolic Models
- Chao Ye
- , Nan Xu
- & Liming Liu
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| Open AccessElucidating dynamic metabolic physiology through network integration of quantitative time-course metabolomics
- Aarash Bordbar
- , James T. Yurkovich
- & Bernhard O. Palsson
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| Open AccessConnecting myelin-related and synaptic dysfunction in schizophrenia with SNP-rich gene expression hubs
- Hedi Hegyi
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| Open AccessNoise-processing by signaling networks
- Styliani Kontogeorgaki
- , Rubén J. Sánchez-García
- & Ben D. MacArthur
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| Open AccessUntargeted metabolomics analysis reveals key pathways responsible for the synergistic killing of colistin and doripenem combination against Acinetobacter baumannii
- Mohd Hafidz Mahamad Maifiah
- , Darren J. Creek
- & Jian Li
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| Open AccessSuppression of TAK1 pathway by shear stress counteracts the inflammatory endothelial cell phenotype induced by oxidative stress and TGF-β1
- Ee Soo Lee
- , Llorenç Solé Boldo
- & Martin C. Harmsen
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| Open AccessThe combination of the functionalities of feedback circuits is determinant for the attractors’ number and size in pathway-like Boolean networks
- Eugenio Azpeitia
- , Stalin Muñoz
- & Luis Mendoza
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| Open AccessAcetate fluxes in Escherichia coli are determined by the thermodynamic control of the Pta-AckA pathway
- Brice Enjalbert
- , Pierre Millard
- & Fabien Létisse
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| Open AccessDiscovering missing reactions of metabolic networks by using gene co-expression data
- Zhaleh Hosseini
- & Sayed-Amir Marashi
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| Open AccessSimple and complex retinal dystrophies are associated with profoundly different disease networks
- Christina Kiel
- , Claire Lastrucci
- & Luis Serrano
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| Open AccessTargeting pathogen metabolism without collateral damage to the host
- Jurgen R. Haanstra
- , Albert Gerding
- & Barbara M. Bakker
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| Open AccessDrug Response Prediction as a Link Prediction Problem
- Zachary Stanfield
- , Mustafa Coşkun
- & Mehmet Koyutürk
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| Open AccessEColiCore2: a reference network model of the central metabolism of Escherichia coli and relationships to its genome-scale parent model
- Oliver Hädicke
- & Steffen Klamt
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| Open AccessMetabolic response induced by parasitic plant-fungus interactions hinder amino sugar and nucleotide sugar metabolism in the host
- Dong-Kyu Lee
- , Soohyun Ahn
- & Sung Won Kwon
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| Open AccessPrinciples of proteome allocation are revealed using proteomic data and genome-scale models
- Laurence Yang
- , James T. Yurkovich
- & Bernhard O. Palsson
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| Open AccessLarge-scale identification of adverse drug reaction-related proteins through a random walk model
- Xiaowen Chen
- , Hongbo Shi
- & Wei Jiang
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| Open AccessAntagonistic autoregulation speeds up a homogeneous response in Escherichia coli
- Guillermo Rodrigo
- , Djordje Bajic
- & Juan F. Poyatos
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| Open AccessA self-enhanced transport mechanism through long noncoding RNAs for X chromosome inactivation
- Chunhe Li
- , Tian Hong
- & Qing Nie
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| Open AccessMacromolecular crowding explains overflow metabolism in cells
- Alexei Vazquez
- & Zoltán N. Oltvai
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| Open Access1H NMR metabolomic study of auxotrophic starvation in yeast using Multivariate Curve Resolution-Alternating Least Squares for Pathway Analysis
- Francesc Puig-Castellví
- , Ignacio Alfonso
- & Romà Tauler