A collection of European sweet cherry phenology data for assessing climate change

Abstract

Professional and scientific networks built around the production of sweet cherry (Prunus avium L.) led to the collection of phenology data for a wide range of cultivars grown in experimental sites characterized by highly contrasted climatic conditions. We present a dataset of flowering and maturity dates, recorded each year for one tree when available, or the average of several trees for each cultivar, over a period of 37 years (1978–2015). Such a dataset is extremely valuable for characterizing the phenological response to climate change, and the plasticity of the different cultivars’ behaviour under different environmental conditions. In addition, this dataset will support the development of predictive models for sweet cherry phenology exploitable at the continental scale, and will help anticipate breeding strategies in order to maintain and improve sweet cherry production in Europe.

Design Type(s) observation design • data integration objective
Measurement Type(s) phenology
Technology Type(s) visual observation method
Factor Type(s) selectively maintained organism
Sample Characteristic(s) Prunus avium • French Republic • Germany • Serbia • Kingdom of Spain • Switzerland • United Kingdom • Italy • Belgium • Bulgaria • Kingdom of Norway • Austria

Machine-accessible metadata file describing the reported data (ISA-Tab format)

Background & Summary

The impact of climate change on plant phenology has been described in recent decades, highlighting a hastening of flowering phenology in response to increasing winter and spring temperatures17. Long records of flowering dates have been proven extremely valuable to reconstruct past phenology and to predict phenology under future climatic scenarios. In Japan for example, flowering dates of cherry trees (Prunus jamasakura) have been recorded for centuries and analyses of these records have revealed that cherry flowering is currently occurring earlier than at any time in the previous seven to 12 centuries, due to the impact of warming and urbanization on phenology5,8,9. This earlier flowering trend has been observed for other fruit trees1014, which are particularly vulnerable to temperature changes due to their long life span. Peach (Prunus persica), apricot (Prunus armeniaca), almond (Prunus dulcis), plum (Prunus salicina and domestica) and sweet cherry (Prunus avium L.) are amongst the most commercially important Prunus fruit tree species planted in temperate climate zones. In Europe, cherry tree blossom of early maturing cultivars showed an advance up to 4.7 days/°C in Germany10,14, and warmer winters have dramatically affected the sweet cherry production in South-Western France, with a 30% yield in 2007. Warmer winters can as well be associated with delayed spring phenology for some species and, occasionally resulting in abnormal flowering phenology and reduced productivity1518. Models for chill availability predict an increase in the delaying effect of mild winters as temperature increase becomes more pronounced6,19,20, especially in warmer locations21. In the context of substantial changes to environmental conditions induced by climate change, it will be essential that plant cultivars are well adapted to warmer winter and spring temperatures and to more extreme climatic events such as erratic spring frosts and summer heat waves. This is especially true for perennial fruit crops, which require more than a decade before a new cultivar is released.

Large phenological datasets are key for the development of phenological models (e.g., refs 2225), which are valuable tools to support breeding strategies. Although recent studies have shown the value of a wide range of data26,27, most analyses for fruit tree crops are based on phenological data for a very limited number of experimental sites, and rarely include more than two cultivars within a species (e.g., refs 28,29).

Sweet cherry trees are particularly interesting for phenology studies, their long orchard life providing the potential for long-term datasets. Reference cultivars have been planted and observed for decades for phenology and productivity traits in trials dedicated to new hybrids characterization. For example, at the Fruit Experimental Station (Toulenne, INRA Bordeaux, France), phenological data have been recorded for ‘Burlat’ cultivar for 35 years. Consequently, large phenological datasets are available for reference cultivars in many European orchards involved in breeding programmes. Despite this, long historical datasets of fruit tree phenology are rarely analysed together or made available to the scientific community. A few analyses on sweet cherry phenology in Europe were published using the phenological observations of fruit trees by the German Weather Service (DWD)10,12, from non-publicly available datasets30,31 or from the PEP725 data14. In addition, published studies often focus on specific location10,12,3033.

In this study, we describe a unique dataset of sweet cherry flowering and maturity records for 25 sites in Europe (Fig. 1) with highly contrasted climates. Past studies showed that phenology data spanning 20 or 30 years were valuable for climate change related analyses7,34. Thus the dataset presented here, with an overall 37 year-period (1978–2015, Fig. 2) will be valuable for phenology and climate change studies. This dataset covers a wide range of European latitudes and longitudes and is unique in its collection of cultivars (between 1 and 191 cultivars per site), each cultivar being represented by clones of the same original tree in each country, which supports robust analyses of plasticity and response to climatic conditions.

Figure 1: Experimental orchards location.
figure1

Flowering and maturity dates were recorded in 25 sites from 11 European countries, indicated by the red circles. Size of the circle is proportional to the number of cultivars recorded in each site.

Figure 2: Description of data source, time-span, number of observed cultivars, and location within Europe.
figure2

Since data were collected from various experimental stations, the dataset is not homogeneous regarding the number of cultivars (Figs 1 and 2, Table 1) or the record length (Fig. 2). Past research have shown the value of using heterogeneous records combined from different sites and cultivars for the evaluation of climate change response and phenology modelling approaches (e.g., refs 21,3538). In particular, phenology models have been successfully tested and optimized using data sourced from different sites27,38. Therefore, we want to highlight the value of this dataset, combining data from various geographical sites and contrasted cultivars, for potential multi-environment analyses yet to be implemented. 13 out of 25 sites meet the criteria of more than 15 recorded years that was shown to be useful for climate change analysis7 (Fig. 3; Table 1). Single site analyses can thus be applied to track phenological climate shifts in a given environment. Subsequently, phenology models can be further evaluated by pooling data across geographically and climatically varied sites, leading to a better knowledge of climate-phenology relations. Extreme European climate, e.g., South of Spain, can be used to investigate climate analogues for projected climatic scenarios39. In addition, for eight sites, two or more cultivars were observed for at least 15 years (Fig. 3). Between cultivar differences can be assessed at a single site and across sites with common cultivars. These analyses can reveal whether some cultivars are more susceptible to evolution in climatic conditions. The dataset offers the possibility to study different flowering phase data, namely beginning, full and end of flowering, together with maturity dates for some cultivars (Table 1), and to perform sequential phenology phase assessments.

Table 1 Overall description of the data records.
Figure 3: Information on the number of observed cultivars and the overall record length for each site.
figure3

Some site names were omitted the ease the comprehension. The numbers between brackets indicate the number of cultivars with more than 15 years of observation. The dash line indicate the 15 years limit for the record length, criteria mentioned in (Fu et al.7) as sufficient to perform climate change response analysis.

Overall, despite the fact that they are heterogeneous, data from the different sites can be combined in integrated analysis to study their responses to environment. Such dataset is extremely valuable for characterizing the phenology response to climate change and the plasticity of the different cultivar behaviour under various environmental conditions. In addition, these records can support the development of predictive models exploitable at the continental scale that can be used by growers and breeders, and to anticipate breeding strategies in order to maintain and improve sweet cherry production in Europe.

Methods

Sweet cherry phenological data were collated from French and European networks. Established in 1952, CTIFL is a non-profit organization involved in the French fruit and vegetable industry. It developed a private database dedicated to information on cultivars planted in experimental orchards. Flowering and maturity dates for up to 191 reference cultivars grown in French experimental stations were extracted from the database. At the European scale, in the context of the COST Action 1104 (2012–2016; https://www.bordeaux.inra.fr/cherry/), which aimed at creating a dynamic network of scientists and other professionals conducting research to improve sweet or sour cherry production in Europe, we established a working group (WG) for phenology studies. Flowering and maturity dates together with the protocol details for the observations were collected. Although a standardisation of the recorded stages is on-going within the group, past observation standards for the different flowering stages are not homogeneous and are described in Fig. 4 and Table 2. They correspond to a percentage of open flowers or fallen petals. Since the development of the BBCH scale (Biologische Bundesanstalt, Bundessortenamt und Chemische Industrie), this standard has been applied as a coding system for the characterization of the entire developmental cycle of annual and perennials plants40,41. Here, where possible, we associated the recorded stages, as defined in each experimental location for observations, with the corresponding BBCH stage (Table 2). In every location, one or two observers were in charge of recording the phenology dates. At the end of the season, records were added to the dataset. We calculated the length of the flowering season, which is the number of days between beginning and end of flowering, where these dates were available.

Figure 4: BBCH descriptors (Meier40) corresponding to the flowering and maturity stages observed in the dataset.
figure4

Pictures @INRA.

Table 2 Stages recorded in the experimental sites, when available, associated with the corresponding BBCH stage.

Data Records

Flowering and maturity dates from all sites can be found in the dataset file stored in the Dryad Digital Repository (Data Citation 1). The spread sheet consists of a table with the description of all phenological data (Table 3). The experimental sites are described by name, latitude, longitude and altitude. Each row corresponds to the dates (beginning of flowering, full flowering, end of flowering, beginning of maturity) documented each year for one tree when available, or the average of several trees for each cultivar. For registration reasons, one cultivar can be registered and observed under different clone numbers, ranging from 1 to 7 clone accession numbers, so the clone number was indicated when available. The cultivar name was always indicated and when available the rootstock information was provided. Dates recorded were also provided as day of year (starting with 1 for January 1st) and the duration of flowering was calculated (days).

Table 3 Metadata.

Technical Validation

All data were checked for consistency and anomalous values were corrected or removed (Supplementary Table 1). Some old cultivars, that can be found in many countries, have names that differ slightly between the sites so we arbitrarily chose one common name: ‘Badacsony’ was selected as the common name for ‘Badacsony’, ‘Badacsoner’ and ‘Badacsonyi’; ‘Francesca’ and ‘Francessca’ were regrouped as ‘Francesca’. In total, 51 records were corrected (Supplementary Table 1).

For records of more than 15 years, we checked the consistency of collected data between sites. This cross-checking showed data for a given cultivar were highly correlated, even for sites as far as 400 km from each other (Table 4), confirming that the collected data are consistent. In addition, when possible, we chose to compare our data to similar phenological observational records from the European phenology database PEP725 (http://www.pep725.eu). Data for ‘early cultivar’ and ‘late cultivar’ were retrieved from the database and correlated with close-by sites when at least 15 common years of data were available. We identified PEP stations located within a range of 200 km for Bonn, Conthey, Gembloux and Jork. Strong correlations and minimal differences were found between our data and the flowering dates recorded and validated in PEP725 (Fig. 5). Flowering dates records for six cultivars met the criteria of 15 year-records and the Spearman correlations were all higher then 0.76, regardless of the flowering precocity of the cultivar or the site (Fig. 5).

Table 4 Consistency of data between sites.
Figure 5: Comparison of flowering dates in days (from 1st of January) for 6 cultivars from our dataset and, unless otherwise stated, for BBCH60 stage for the ‘Early cultivar’ and ‘Late cultivar’ collected from PEP725 (http://www.pep725.eu) for stations geographically close to our experimental sites.
figure5

For the Bonn site, PEP725 data were obtained from the station 1360, located in Zülpich (Germany; longitude: 6.67; latitude: 50.68; distance from Bonn: 23 km). Gembloux data were compared to flowering dates from the station 1498, located in Übach-Palenberg (Germany, longitude: 6.12; latitude: 50.92; distance: 110 km). For Jork, PEP725 data were obtained from the station 346, located in Hamburg-Altengamme (Germany; longitude: 10.28; latitude: 53.43; distance: 37 km). Conthey data were compared to full flowering (BBCH stage 65) dates from station 3260 (Müllheim, Germany; longitude: 7.63; latitude: 47.82, distance: 178 km). Spearman’s correlation coefficient was calculated for each site between our data and corresponding PEP725 data.

Usage Notes

The sweet cherry phenology dataset was collected with the objective to support climate change and phenological analyses for varied European environments. These data can be associated with other Prunus avium flowering data provided by the European phenology database PEP725 (http://www.pep725.eu) to perform a wide evaluation of phenology in early and late cultivars.

Additional Information

How to cite this article: Wenden, B. et al. A collection of European sweet cherry phenology data for assessing climate change. Sci. Data 3:160108 doi: 10.1038/sdata.2016.108 (2016).

Publisher’s note: Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

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Data Citations

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Acknowledgements

The authors would like to thank the EU COST FA1104 action for enabling interaction and data sharing between sweet cherry collaborators. We warmely thank Dr Rebecca Darbyshire for her remarks and suggestions on the manuscript. The authors are grateful to the organisations that contributed to the French data (Koala database, administrated by Ctifl): Ctifl (Balandran), Sefra (Bozas, Etoile, Saint Laurent d’Agny), Serfel (Saint Gilles), Centrex (Torreilles), Cefel (Montauban), Verexal (Obernai), La Morinière (Saint Epain), La Tapy (Carpentras), Fruit Experimental Unit (INRA Bordeaux, Toulenne). Data from the Republic of Serbia were obtained within the scope of the Research Project TR-31064, supported by the Ministry of Education, Science and Technological Development of the Republic of Serbia. We thank INRA, Aquitaine Region and CEP Innovation (AQUIPRU project 2014-1R20102-2971) for financing postdoctoral fellowship to JAC. The authors would like to thank NIAB EMR technical team who collected the data for decades, and more recently Mike Davies, Clare Hobson, Carlos Angulo Costa and Helen Longbottom.

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Contributions

B.W. collected, checked the data, performed the technical validation and wrote the paper. J.A.C. and J.L. contributed to the technical validation and corrected the paper. J.L., G.L.O., M.B., S.R., E.S., A.S., D.C., H.M., D.G., C.C., S.M., J.M.P., M.M., R.S. and G.C. provided data. J.Q.G. organized the phenology network and provided data.

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Correspondence to Bénédicte Wenden.

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The authors declare no competing financial interests.

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Wenden, B., Campoy, J., Lecourt, J. et al. A collection of European sweet cherry phenology data for assessing climate change. Sci Data 3, 160108 (2016). https://doi.org/10.1038/sdata.2016.108

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