Abstract
Climatic anomalies are increasing in intensity and frequency due to rapid rates of global change, leading to increased extinction risk for many species. The impacts of anomalies are likely to vary between species due to different degrees of sensitivity and extents of local adaptation. Here, we used long-term butterfly monitoring data of 143 species across six European bioclimatic regions to show how species’ population dynamics have responded to local or globally-calculated climatic anomalies, and how species attributes mediate these responses. Contrary to expectations, degree of apparent local adaptation, estimated from the relative population sensitivity to local versus global anomalies, showed no associations with species mobility or reproductive rate but did contain a strong phylogenetic signal. The existence of phylogenetically-patterned local adaptation to climate has important implications for forecasting species responses to current and future climatic conditions and for developing appropriate conservation practices.
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Introduction
Climate change threatens many species with population decline and higher extinction risk, not only through the effects of increases in mean temperature1,2,3 but also due to the increased intensity and frequency of climatic anomalies (i.e., variations from average climatic values4,5). For several species, climatic anomalies may have larger impacts than continuous increases in global mean temperature5,6.
Bioclimatic studies have reported population responses to micro-to-macro scaled climatic events7,8, but none have tested for contrasting population dynamics across the species distributional range due to adaptations to the local biotic and abiotic conditions. Here, we hypothesize a continuum describing the degree of local adaptation for different species, from those showing relatively higher sensitivity to anomalies in the local-versus-global climatic regime (“locally adapted” species) to those with higher sensitivity to global anomalies (“globally adapted”). This corresponds to the known trade-offs between performance and tolerance, with populations of locally adapted species performing best at the average local climatic conditions, but being sensitive to the local anomalies, hence showing population declines below and above the optima; while globally adapted species will best perform around the average conditions occurring across their distributional range, and being sensitive more to the anomalies around this average (Fig. 1). Understanding the degree of local adaptation is essential for predicting species responses to climate change9,10. To date, most research has focused on global or continental species responses to climate change11,12, while local responses have received less attention13,14. Comprehension of species’ spatial adaptations at the appropriate scale is needed and likely to lead to a better understanding of current species trends and improve predictions from bioclimatic models.
Previous research on the phenological responses of butterflies provides some evidence of local adaptation across species13, with similar findings from single-species studies15. It is likely that species attributes contribute strongly to adaptive potential9,13 and subsequent responses to global change16,17. Therefore, we expect that life-history traits mediate the degree of local adaptation to climatic anomalies. Experimentally designed research on insects has shown that local adaptation to climate is mediated by both physiological18,19 and morphological attributes (e.g., fur on body and melanin pigmentation20). However, it is unclear how these results translate to species population dynamics at broad spatial scales; partly due to the constraints of gathering long-term data across the large distributional ranges of multiple species14.
In this study, we performed a comparative analysis using multiple species of butterflies as a study system because, like many other thermophilous organisms, they are highly sensitive to weather and strongly affected by climate change21,22,23, and show rapid responses to changes24, minimizing (in comparison to plants and birds, for example) the demographic time lag to extinction25,26. Moreover, they show broad variation in life-history traits27, and have been subject to spatially- and temporally replicated standardized abundance sampling across a large continental extent.
We first evaluate if species responses can be classified on our hypothesized continuum of local-global adaptation. Based on a simulation that demonstrates our hypothesis (Fig. 1), we expect that species adapted to local climatic conditions have population dynamics best explained by local rather than global climatic anomalies, i.e., they are more sensitive to anomalies occurring at the local spatial scale in terms of higher goodness of fit between interannual population change versus anomaly from average local climate conditions. Second, we test if local or global species’ responses to climatic anomalies are mediated through key butterfly species attributes.
We hypothesized that the relative sensitivity to local climate anomalies (our proxy of local adaptation) would be higher for species with less gene flow between populations and with higher reproductive rates. Therefore, we expected increased adaptation to local weather anomalies for (i) less mobile species, and (ii) species with higher reproductive rates (assessed in terms of the number of generations per year). We found a wide range of responses across species, with some more sensitive to climatic anomalies at the local site level, to others more sensitive to climatic anomalies calculated relative to a global mean across the whole dataset. We also found this interspecific variation was not related to species mobility or reproductive rate, although it was phylogenetically patterned.
Results and discussion
Population change and climatic anomalies
To test our hypotheses, we used count data from 143 species collected across 172 sites within six European bioclimatic regions between 1999 and 2017 (167,288 site-year-species data points). For each site, butterfly counts were extracted from one of three European butterfly-monitoring schemes, all using a standardized transect-based methodology (the “Pollard Walk”28). We used the weekly counts collected across six bioclimatic regions to derive species’ regional phenologies (flight period) and calculate series of annual abundance indices for each species and each site29. Specifically, while accounting for density dependence (known to be important in butterfly populations30,31,32) we modeled how annual population change per species varied in response to climatic anomalies at two spatial scales: local (i.e., climatic anomalies in relation to the average across all years at that specific site) and global (i.e., climatic anomalies in relation to the average climate across all years and all sites where the species is found).
Climatic anomalies were calculated for temperature, precipitation, and aridity occurring during species-specific phenological periods (overwinter, pre-flight, flight, or post-flight period), both for the year of population change t (except post-flight period) and the previous year t – 1, thereby accounting for possible direct and delayed population responses. Through AIC-based model selection (Supplementary Data 1), we identified 86 species for which population dynamics were significantly explained by climatic anomalies, of which half were affected by anomalies in temperature (n = 48), either at the local or to the global scale, and 38 species responded to anomalies in precipitation or aridity. This result unifies findings from previous studies which have related changes in populations of butterfly species individually to either temperature25, precipitation21, or aridity33,34. Overall, the importance of climatic anomalies at the most sensitive phenological periods varied between the species, indicating idiosyncratic interspecific variation in weather sensitivity2,5 (Supplementary Data 2).
Interspecific variation and the mediating role of species attributes
To test our first hypothesis, we quantified the extent to which species were either locally or globally adapted by comparing the variance in year-to-year population change explained (R2) for each species using either local or global climatic anomalies, using the most appropriate climate variable for that species (see above). The degree of apparent local adaptation for each species was calculated as the difference between the two R2 values, ranging from −1 to 1, with higher values indicating greater relative sensitivity to local climatic conditions, and suggestive of local adaptation (Fig. 1). Despite some species showing a low degree of apparent local adaptation (<0.05), we observed a continuum of adaptation between species, from most locally adapted (e.g., Brenthis ino, Melitaea parthenoides) to most globally adapted (e.g., Cupido osiris, Apatura ilia; Fig. 2; Supplementary Data 1 and Data 2). Species at the ends of the continuum responded much more strongly to anomalies at a specific scale (local or global), producing unimodal “n-shaped” responses, which are expected given sampling across their climatic niche (illustrative examples provided for Brenthis ino and Cupido osiris Fig. 3; Supplementary Figs. 1–86).
For the second hypothesis, we tested if relative sensitivity to local-versus-global climate anomalies was mediated by species’ mobility35 and reproductive rate (number of generations per year; i.e., voltinism, with species categorized as univoltine versus multivoltine36). We also accounted for the potential effect of their phylogenetic relationships (see “Methods”). We found a strong phylogenetic signal, explaining 84% of the variation (Pagel’s lambda = 0.84; P value < 0.0001; Fig. 4), suggesting phylogenetic patterning in the degree of local adaptation across species (Fig. 1). However, we found no effect of either mobility or reproductive rate (Supplementary Fig. 87 and Supplementary Table 1); although mobility and reproductive rate had a significant phylogenetic signal, this did not explain the degree of species local adaptation beyond that expected from taxonomic relatedness (Supplementary Fig. 88 and Supplementary Table 2). Given these results, it was possible that species overall sensitivity to climatic anomalies (either local or global) or lack of sensitivity (e.g., species for which density dependence was a main factor), also had a phylogenetic signal. Hence, we performed a post hoc analysis on the 143 species and found that phylogeny explained 88% of the species presence or lack of sensitivity to climatic anomalies (Supplementary Fig. 89 and Supplementary Table 2). The strong phylogenetic signal of both the degree of local adaptation (relative sensitivity to local-versus-global climate anomalies) and the overall total sensitivity to climatic anomalies, provides robustness to discard potential stochasticity in the results.
The role of species phylogeny mediating local adaptation
Our results suggest a dominant effect of evolutionary constraints (i.e., unmeasured traits with a strong phylogenetic signal) on the capacity for local adaptation. However, they provide no support for our expectation of low gene flow and high reproductive rates leading to increased adaptive potential.
An apparent degree of local adaptation shared by closely related species might be expected. Greater sensitivity to local climate anomalies implies spread and survival at sites where adaptation to local conditions is selected; this could be facilitated by the filtering of individuals from pre-existing genetic diversity or through phenotypic plasticity (e.g., behavioral, morphological or physiological attributes) favouring survival and eventual evolutionary adaptation. Closely related species share similar genetic and phenotypic attributes, although we did not find mediation of local adaptation through either mobility or voltinism. This is possibly because European butterfly species have resided in their current location for long periods (many butterflies expanded across Europe during their post-glacial colonization37,38), even creating refugia in Southern areas39, resulting in a long-term established genetic differentiation currently poorly affected by mobility or reproductive rates, and hence with ample time to adapt to local conditions regardless of reproductive rates. Note, that there was no effect of GST when testing it as a proxy of genetic differentiation as an alternative to mobility (Supplementary Table 3). Phylogenetic signals have also been seen in distributional shifts of plant communities40 and some butterfly species41; while mixed results have been found in relation to mobility and reproductive rate in range shifts or distributional trends42,43. Specific phylogenetic patterns of local adaptation might also result from the pressures of the external conditions affecting the capacity to evolve and adapt. For example, local adaptation might be more likely in certain regions or habitat types, with phylogenetic patterning in the associations of species to these conditions44,45.
Globally adapted species could result from low local selective pressures, although we found no association between the overall variance in population dynamics explained by climate with species degree of local-versus-global adaptation (P value = 0.54; Supplementary Fig. 90). Alternatively, global adaptation might result from a lack of genetic variation across the populations46, or could be linked to high gene flow that is not reflected, or remained undetected, in our measure of species dispersal ability47. Extensive gene flow between populations and weak selection selective pressures may constrain local adaptation48, though recent studies indicate that this is not always the case for gene flow49,50. Finally, global adaptation may result from pleiotropy, i.e., single genes affecting more than one phenotypic trait, limiting the degree of adaptive change due to selective trade-offs across the attributes for some species51,52.
Implications for ecological forecasting and conservation
It is important to contextualize the intra- and interspecific variation of population fluctuations of butterfly species when facing climatic anomalies because they have implications for ecological forecasting and conservation under climate change9,53. Local adaptations are likely to enhance stability for some populations under perturbations. For example, assuming similar niche breadth, locally adapted species at their retracting warm distributional edges may remain within their fundamental niche space for longer than expected, compared with if they were globally adapted. This difference in species capacity to cope with environmental change could be of particular importance to the conservation of globally adapted species if populations at warm marginal edges contain the majority of the species genetic diversity54. In contrast, locally adapted populations at the colder leading edges of their ranges, expected to be strongholds of persistence under climate warming, may be more vulnerable to local heat extremes than if they were globally adapted. We suggest future research could seek to quantify if or how local adaptation interacts with the specific location of populations within their geographic range to influence population changes, also taking account of how climatic sensitivity within species can vary across their geographical range55,56.
We acknowledge some limitations of the study, with some species (such as Vanessa cardui, Supplementary Fig. 86) showing unexpected strong signals of local adaptation despite multi-generational trans-continental migration of this species57. This might be due to spurious results but could be genuine and due to factors that we cannot elucidate within this study but are worth researching in the future; for example, the potential existence of several races with different environmental tolerances and dispersal patterns across Europe, or rapid adaptation to local conditions over just one or two generations, potentially mediated by epigenetic changes58. Nonetheless, the relatively strong phylogenetic signal found here is contingent upon a few species with large leverage. Removing species based on data availability, or based on visualization of outliers in the tree, leads to a lower phylogenetic signal (Supplementary Fig. 91). We also do not discard the role of other factors such as habitat availability and connectivity in influencing butterfly species dynamics as well as potential interactions with the effect of the climatic anomalies, but their role was out of the scope of this study.
Despite raising interesting questions to pursue further, our overall results hold important implications for forecasting species responses to climate change. Namely, that local adaptation is important to factor into predictive climate models for a substantial subset of species, and this is likely to also influence advice regarding appropriate conservation practices in different locations.
Methods
Data collection
Butterfly count data were extracted from three long-term Butterfly Monitoring Schemes carried out in Finland, Spain, and the UK, covering six out of the ten bioclimatic regions across Europe and three main biomes (Supplementary Figs. 92 and 93). The schemes consist of a network of sites where volunteers perform visual counts of butterflies along transects (i.e., sites) following the standardized “Pollard Walk” methodology28. Counts are conducted weekly during the butterfly flight season, which varies depending on the climatic zone within the range of March to the end of September. The species nomenclature is defined following Wiemers et al.59.
For each site, year and species, we calculated an annual abundance index of adult butterflies that accounted for missing counts and spatial and temporal variation in species phenology29,60. We derived the annual species phenology from the observed weekly counts, fitting generalized additive models (GAM) for each bioclimatic region29. We then used the regional flight curve derived from the GAM as an offset in a generalized linear model to predict and impute values for missing counts. The complete series of weekly counts, including the imputed values, was then used to calculate an annual abundance index per species, site, and year. This method corrects for missing week counts, using the information derived from the regional phenology and produce indices that are less biased than indices derived from linear interpolations29. However, to assure consistent estimates, we excluded indices of abundance >50% of missing observations. We used this annual species index of abundance (Ni) to calculate the interannual change in abundance as a proxy of the annual population growth rate. The rate was calculated per species population (i.e., per site) between two consecutive years as log(Nt+1/Nt).
The duration of the schemes (i.e., starting year) and the number of surveyed sites varied between countries: Finland (1999, nsites = 107), Spain (1994, nsites = 130) and the UK. (1976, nsites = 2128). Thus, we used Finland (the limiting country) to set the range of study years (1999–2017) and the number of sites per country. To have sufficient interannual change data per site, we retained only sites having at least ten years of interannual abundance change data between 1999 and 2017. This rule reduced our sample to 53 sites for Finland, 59 for Spain and 701 for the UK. From the 701 UK sites, we used a random subset of 60 sites to balance the sample size between countries (Supplementary Figs. 94–99). These sites were selected randomly, apart from a condition maintaining at least 20 km separation between the selected sites.
As the effect of climate on population growth rates varies depending on the life stages of the organisms61,62, we defined four life stages periods relevant for butterfly species55: pre-flight period, flight period, post-flight period, and overwintering. Pre-, post-, and flight periods vary across species, years, and bioclimatic zone29. Thus, we set these periods per species, year and bioclimatic zone62, except the post-flight period of year t, which we discarded because it could have no possible effect on the population dynamics of the species in that year (adults in the count of that year had already perished). These periods were defined using the annual flight curve distribution from the relative abundances per species and zone (i.e., using the GAM fitted annual species phenology). The flight period was set as the dates between the 10th and 90th percentiles of the species distribution for each year and each bioclimatic zone. The pre-flight period was then set from February to the 10th percentile of the species flight period, and the post-flight period from the 90th percentile to the end of October. For multivoltine species (i.e., species with more than one reproduction per year), flight period was set between the 10th and 90th percentiles of the entire species flight-period distribution, independently of the generation. The overwintering period was set as fixed from November to January (of year t – 1 to year t), equally for all species and all sites. Although overwintering could be defined over different time periods, we fixed it to minimize potential overlaps between it and its adjacent time periods for some species in some regions55.
We calculated climatic anomalies for temperature, precipitation, and aridity (as a combination of temperature and precipitation) because previous studies have demonstrated that butterflies, as also many other organisms, can be affected by each of these variables21,33,34,63. Climatic data were obtained from the European Climatic and Assessment Dataset project (ECAD)64,65. The data consisted of daily temperature (in degrees Celsius) and precipitation (in millimeters) from a gridded climatic dataset constructed from extrapolations of observations from a series of meteorological stations throughout Europe. We extracted the daily temperature and precipitation at 1° scale for each site for the period 1999–2017; and calculated local and global climatic anomalies for temperature and precipitation per species and phenological period (overwintering, pre-, post-, and flight period) as follows:
where Wsi is the mean temperature or the total rainfall, depending on the climatic variable being analyzed per site (s) and year (i), Ws is the mean temperature or the total rainfall per site for all studied years, and W is the mean temperature or total rainfall for all studied sites and all years. Potential interactions between temperature and rainfall were calculated as the standardized aridity index (Eqs. (3) and (4))33,66:
where SAI stands for Standardized Aridity Index, T for mean temperature, P for total precipitation, sd for standard deviation, with subindexes as above.
Modeling population changes in relation to climatic anomalies
We fitted three models to test whether species population growth rates were locally or globally adapted: a null model accounting only for density dependence to remove species not affected by the climatic anomalies when testing our hypotheses (Eq. (5)); a local model accounting for density dependence, the local anomaly term of the climatic variable being analyzed, and its quadratic term (Eq. (6)); and a global model with density dependence, the global anomaly of the climatic variable, and its quadratic term (Eq. (7)). Models were fitted independently per each species, with population growth rate as the response variable expressed as log(Nit/Nit − 1). Site was set as a random intercept for all species, except for those with a low number of sites (n = 23 species), due to lack of model convergence when adding random effect; in these cases, only fixed effects were added (Supplementary Data 2). Errors were assumed to be normally distributed, and model diagnostics were used to test the conformation of the data to the model assumptions.
Where Ni is the annual abundance index at the site ith and time t or t – 1, Wit is the climatic anomaly variable site i at time t either at the local or the global scale. Models including climate were fitted per species with all combinations of climatic variable W (temperature, precipitation, and aridity), local or the global scale, time t or t − 1 (Wit and Wit-1, the latter not shown in the equations for simplicity), and all phenological periods (winter, pre-, post-, or flight period; except for the post-flight period at time t; Eqs. (6) and (7)):
This procedure resulted in a set of 43 models per species: the reduced model and 42 models consisting of each of the three climatic variables, per two spatial scales (local and global), per two time periods (t and t − 1), and per four time periods (excepting the post-flight period at time t). From within these 43 models, we retained the best fitting model for each species for identifying the climatic variable, spatial scale (local or global), and time (t or t − 1) and phenological period, that most affected the species populations dynamics. Model selection was based on AIC value (Supplementary Data 2). Species with the null model as the best model were discarded from all further analyses (i.e., AIC null model—AIC alternative model <2; n = 56). We did this on the basis that in these cases our climatic variables explained almost nothing of the species population dynamics, i.e., the variance explained by models with climatic variables was close to null. We also discarded one species (Polyommatus ripartii) as the ΔAIC between models containing different climatic anomalies, different periods, times and scale differed <2; such as it was not possible to select the best model. We retained any species with the best models, including both the global and local anomalies of a specific climatic variable, at a specific period and time (n = 11). We did so because we were interested in the degree of local adaptation (see below); therefore both scales were eventually used. Model selection led to 86 species for which the best models included climatic anomalies at the local and the global scale, all with AIC lower than that of the null model. Following a conservative approach, we initially discarded nine out of these 86 species because they had less than ten years of interannual abundance change data (Supplementary Data 1 and Data 2). Discarding them did not influence the results related to attributes (see next section), but implied that some species were alone in their clade (e.g., Apatura ilia) or completely separated from the other groups (Papilio machaon). Therefore, we decided to add them back to have a more complete and less biased phylogenetic tree that encompassed all 86 species.
The role of phylogeny and species attributes mediating the effect of climatic anomalies in species population dynamics
For each species, we extracted the conditional R2, i.e., the variance explained by the fixed effects without accounting for the variance due to random effects of the best fitting model and that of the model with the same climate variable but measured at the alternative spatial scale (local or global), keeping all other specifications (i.e., life-history period and year) fixed. We then used these variances to calculate a proxy of the degree of local adaptation per species by subtracting R2local model – R2global model. This proxy was subsequently used as the response variable to evaluate how local adaptation relates to mobility, voltinism, and phylogeny. To do so, we used a phylogenetic generalized linear model67, with the species degree of local adaptation fitted to a normal error distribution, and mobility and voltinism as explanatory variables while controlling for the phylogenetic signal of the degree of local adaptation calculated using Pagel’s lambda statistic68.
Mobility and voltinism attribute values were retrieved from the literature35,36,69, with voltinism categorized as either univoltine or multivoltine species (i.e., strictly one generation per year, and two or more generations per year respectively). Species that have a rare, or occasional, second generation were set as univoltine. The butterfly phylogenetic tree was extracted from the most recently published phylogenetic tree of European butterflies37. Alternative categorizations of voltinism were also tested with species categorized as univoltine, putative multivoltine or strict multivoltine, and categorized as per their know number maximum generations (1, 1.5, 2, or more than 2); we also included potential variability of voltinism set as the maximum and the minimum number of generation shown by a given species across Europe. Duration of flight period (in average months) and genetic differentiation (GST)37 were also tested as alternative proxies of genetic differentiation and genetic flow (mobility). None of these alternatives differed qualitatively from the results of our initial model (Supplementary Table 3).
A post hoc analysis for the phylogenetic signal of the species sensitivity to climatic anomalies was done using D statistic70; i.e., whether climate was important in explaining the species population dynamics (best model included climatic anomalies, N = 86) or whether density dependence best explained the population dynamics (the null model was the best model).
We conducted all analyses in R 3.6.1 (R Core Team, 2019), using the package lme471 to fit our models and the package MuMin72 to estimate the marginal and conditional variances. Phylogenetic analyses were done using the phylosig and pgls functions in R package phytools73.
Data availability
The count and abundance butterfly data that support the findings of this study are available from the European Butterfly Monitor Scheme via a signed license agreement (https://butterfly-monitoring.net/). Climatic data are available via ECAD website (https://www.ecad.eu/).
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Acknowledgements
This work and Y.M. were supported by Marie Skłodowska Curie H2020-MSCA-IF-2017 795890 project EXTINCT of the European Commission; as well as, initially by Foundation for Biodiversity Research and CESAB (Centre for the Synthesis and Analysis of Biodiversity, France) project LOLA. We thank the eBMS (https://butterfly-monitoring.net/) for the data and their volunteers for providing the data needed for the study; and Roger Vila and the three reviewers for their revision on the manuscript.
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L.E., M.K., D.R., R.S., C.S., T.O., and Y.M. contextualized the study and its hypotheses. Y.M. led the paper and performed the analyses, with L.E. and supervised by T.O. L.E., M.K., D.R., R.S., C.S., T.O., and Y.M. all contributed to writing the manuscript.
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Melero, Y., Evans, L.C., Kuussaari, M. et al. Local adaptation to climate anomalies relates to species phylogeny. Commun Biol 5, 143 (2022). https://doi.org/10.1038/s42003-022-03088-3
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DOI: https://doi.org/10.1038/s42003-022-03088-3
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