Abstract
Photoenzymatic catalysts are attractive for stereoselective radical reactions because the transformation occurs within tunable enzyme active sites. When using flavoproteins for non-natural photoenzymatic reactions, reductive mechanisms are often used for radical initiation. Oxidative mechanisms for radical formation would enable abundant functional groups, such as amines and carboxylic acids, to serve as radical precursors. However, excited state flavin is short-lived in many proteins because of rapid quenching by the protein scaffold. Here we report that adding an exogenous Ru(bpy)32+ cofactor to flavin-dependent ‘ene’-reductases enables the redox-neutral decarboxylative coupling of amino acids with vinylpyridines with high yield and enantioselectivity. Additionally, stereo-complementary enzymes are found to provide access to both enantiomers of the product. Mechanistic studies indicate that Ru(bpy)32+ binds to the protein, helping to localize radical formation to the enzyme’s active site. This work expands the types of transformation that can be rendered asymmetric using photoenzymatic catalysis and provides an intriguing mechanism of radical initiation.
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Data availability
The data that support the findings in this study are available within the paper and its Supplementary Information or from the corresponding author upon reasonable request.
References
Bornscheuer, U. T. et al. Engineering the third wave of biocatalysis. Nature 485, 185–194 (2012).
Bell, E. L. et al. Biocatalysis. Nat. Rev. Methods Primers 1, 46 (2021).
Reetz, M. T. & Carballeira, J. D. Iterative saturation mutagenesis (ISM) for rapid directed evolution of functional enzymes. Nat. Protoc. 2, 891–903 (2007).
Begley, T. P. Cofactor biosynthesis: an organic chemist’s treasure trove. Nat. Prod. Rep. 23, 15–25 (2006).
Richter, M. Functional diversity of organic molecule enzyme cofactors. Nat. Prod. Rep. 30, 1324–1345 (2013).
Barra, L., Awakawa, T. & Abe, I. Noncanonical functions of enzyme cofactors as building blocks in natural product biosynthesis. JACS Au 2, 1950–1963 (2022).
Prier, C. K. & Arnold, F. H. Chemomimetic biocatalysis: exploiting the synthetic potential of cofactor-dependent enzymes to create new catalysts. J. Am. Chem. Soc. 137, 13992–14006 (2015).
Jeschek, M. et al. Directed evolution of artificial metalloenzymes for in vivo metathesis. Nature 537, 661–665 (2016).
Chen, K. & Arnold, F. H. Engineering new catalytic activities in enzymes. Nat. Catal. 3, 203–213 (2020).
Emmanuel, M. A., Greenberg, N. R., Oblinsky, D. G. & Hyster, T. K. Accessing non-natural reactivity by irradiating nicotinamide-dependent enzymes with light. Nature 540, 414–417 (2016).
Zhou, Q., Chin, M., Fu, Y., Liu, P. & Yang, Y. Stereodivergent atom-transfer radical cyclization by engineered cytochromes P450. Science 374, 1612–1616 (2021).
Rui, J. et al. Directed evolution of nonheme iron enzymes to access a biological radical-relay C(sp3)−H azidation. Science 376, 869–874 (2022).
Massey, V. Introduction: flavoprotein structure and mechanism. FASEB J. 9, 473–475 (1995).
Walsh, C. T. & Wencewicz, T. A. Flavoenzymes: versatile catalysts in biosynthetic pathways. Nat. Prod. Rep. 30, 175–200 (2013).
Biegasiewicz, K. F. et al. Photoexcitation of flavoenzymes enables a stereoselective radical cyclization. Science 364, 1166–1169 (2019).
Black, M. J. et al. Asymmetric redox-neutral radical cyclization catalyzed by flavin-dependent ‘ene’-reductases. Nat. Chem. 12, 71–75 (2020).
Fu, H. et al. Ground-state electron transfer as an initiation mechanism for biocatalytic C–C bond forming reactions. J. Am. Chem. Soc. 143, 9622–9629 (2021).
Fu, H. et al. An asymmetric sp3–sp3 cross-electrophile coupling using biocatalysis. Nature 610, 302–307 (2022).
Huang, X. et al. Photoenzymatic enantioselective intermolecular radical hydroalkylation. Nature 584, 69–74 (2020).
Peng, Y. et al. Photoinduced promiscuity of cyclohexanone monooxygenase for the enantioselective synthesis of α-fluoroketones. Angew. Chem. Int. Ed. 61, e202211199 (2022).
Munro, A. W. & Noble, M. A. in Flavoprotein Protocols. Methods in Molecular Biology Vol. 131, 25–48 (eds Chapman, S. K. & Reid, G. A.) (Humana Press, 1999).
Moulin, S. L. Y. et al. Fatty acid photodecarboxylase is an ancient photoenzyme that forms hydrocarbons in the thylakoids of algae. Plant Physiol. 186, 1455–1472 (2021).
Zhang, B., Liebl, U. & Vos, M. H. Flavoprotein photochemistry: fundamental processes and photocatalytic perspectives. J. Phys. Chem. B 126, 3199–3207 (2022).
Sorigué, D. et al. An algal photoenzyme converts fatty acids to hydrocarbons. Science 357, 903–907 (2017).
Zhang, W. et al. Hydrocarbon synthesis via photoenzymatic decarboxylation of carboxylic acids. J. Am. Chem. Soc. 141, 3116–3120 (2019).
Xu, J. et al. Light-driven decarboxylative deuteration enabled by a divergently engineered photodecarboxylase. Nat. Commun. 12, 3983 (2021).
Nakajima, K., Miyake, Y. & Nishibayashi, Y. Synthetic utilization of α-aminoalkyl radicals and related species in visible light photoredox catalysis. Acc. Chem. Res. 49, 1946–1956 (2016).
Beil, S. B., Chen, T. Q., Intermaggio, N. E. & MacMillan, D. W. C. Carboxylic acids as adaptive functional groups in metallaphotoredox catalysis. Acc. Chem. Res. 55, 3481–3494 (2022).
Kudisch, B. et al. Active-site environmental factors customize the photophysics of photoenzymatic old yellow enzymes. J. Phys. Chem. B 124, 11236–11249 (2020).
Biegasiewicz, K. F., Cooper, S. J., Emmanuel, M. A., Miller, D. C. & Hyster, T. K. Catalytic promiscuity enabled by photoredox catalysis in nicotinamide-dependent oxidoreductases. Nat. Chem. 10, 770–775 (2018).
Ye, Y. et al. Using enzymes to tame nitrogen-centred radicals for enantioselective hydroamination. Nat. Chem. 15, 206–212 (2022).
Ling, Y. et al. The expanding role of pyridine and dihydropyridine scaffolds in drug design. Drug Des. Dev. Ther. 15, 4289–4338 (2021).
Yin, Y. et al. Conjugate addition enantioselective protonation of N-aryl glycines to α-branched 2-vinylazaarenes via cooperative photoredox and asymmetric catalysis. J. Am. Chem. Soc. 140, 6083–6087 (2018).
Yin, Y. et al. All-carbon quaternary stereocenters α to azaarenes via radical-based asymmetric olefin difunctionalization. J. Am. Chem. Soc. 142, 19451–19456 (2020).
Nakano, Y. et al. Photoenzymatic hydrogenation of heteroaromatic olefins using ‘ene’-reductases with photoredox catalysts. Angew. Chem. Int. Ed. 59, 10484–10488 (2020).
Warren, J. J., Tronic, T. A. & Mayer, J. M. Thermochemistry of proton-coupled electron transfer reagents and its implications. Chem. Rev. 110, 6961–7001 (2012).
Sakamaki, D., Ghosh, S. & Seki, S. Dynamic covalent bonds: approaches from stable radical species. Mater. Chem. Front. 3, 2270–2282 (2019).
Hewitt, S. H. et al. Protein surface mimetics: understanding how ruthenium tris(bipyridines) interact with proteins. ChemBioChem 18, 223–231 (2017).
Filby, M. H. et al. Protein surface recognition using geometrically pure Ru(II) tris(bipyridine) derivatives. Chem. Commun. 47, 559–561 (2011).
Espelt, L. R., McPherson, I. S., Wiensch, E. M. & Yoon, T. P. Enantioselective conjugate additions of α-amino radicals via cooperative photoredox and Lewis acid catalysis. J. Am. Chem. Soc. 137, 2452–2455 (2015).
Sandoval, B. A. et al. Photoenzymatic catalysis enables radical-mediated ketone reduction in ene-reductases. Angew. Chem. Int. Ed. 58, 8714–8718 (2019).
Sandoval, B. A. et al. Photoenzymatic reductions enabled by direct excitation of flavin-dependent ‘ene’-reductases. J. Am. Chem. Soc. 143, 1735–1739 (2021).
Remiszevski, S., Koyuncu, E., Sun, Q. & Chiang, L. Anti-hcmv compositions and methods. WO patent 2016077240A2 (2016).
Acknowledgements
We thank the S. Lin, P. Milner, A. Musser and R. A. Cerione groups for use of their equipment and the D. Collum group for use of their computational resources. S.-Z.S. thanks Z. Lu (S. Lin group) for helping with electrochemical measurements and W. Fu (SJTU) for examining the electrostatic map of OYE3. S.-Z.S. thanks H. Fu and Y. Ye for discussion. The research reported here was supported by the National Science Foundation CHE-2135973. C.G.P. acknowledges the NSF-GFRP for support. This work made use of the Cornell University NMR Facility, which is supported, in part, by the NSF though MRI Award CHE-1531632.
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T.K.H. conceived and directed the project. S.-Z.S. and T.K.H. designed the experiments. S.-Z.S. and B.T.N. performed experiments and analysed the results. T.Q. conducted DFT experiments. D.B. and A.J.M. conducted and analysed time-resolved fluorescence spectroscopy. C.G.P helped with revisions of the manuscript. The manuscript was prepared with feedback from all the authors.
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Sun, SZ., Nicholls, B.T., Bain, D. et al. Enantioselective decarboxylative alkylation using synergistic photoenzymatic catalysis. Nat Catal 7, 35–42 (2024). https://doi.org/10.1038/s41929-023-01065-5
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DOI: https://doi.org/10.1038/s41929-023-01065-5