Abstract
Lipid droplets (LDs) have been observed in the nuclei of hepatocytes; however, their significance in liver disease remains unresolved. Our purpose was to explore the pathophysiological features of intranuclear LDs in liver diseases. We included 80 patients who underwent liver biopsies; the specimens were dissected and fixed for electron microscopy analysis. Depending on the presence of adjacent cytoplasmic invagination of the nuclear membrane, LDs in the nuclei were classified into two types: nucleoplasmic LDs (nLDs) and cytoplasmic LD invagination with nucleoplasmic reticulum (cLDs in NR). nLDs were found in 69% liver samples and cLDs in NR were found in 32%; no correlation was observed between the frequencies of the two LD types. nLDs were frequently found in hepatocytes of patients with nonalcoholic steatohepatitis, whereas cLDs in NR were absent from the livers of such patients. Further, cLDs in NR were often found in hepatocytes of patients with lower plasma cholesterol level. This indicates that nLDs do not directly reflect cytoplasmic lipid accumulation and that formation of cLDs in NR is inversely correlated to the secretion of very low-density lipoproteins. Positive correlations were found between the frequencies of nLDs and endoplasmic reticulum (ER) luminal expansion, suggesting that nLDs are formed in the nucleus upon ER stress. This study unveiled the presence of two distinct nuclear LDs in various liver diseases.
Similar content being viewed by others
Introduction
The nucleus is a membrane-enclosed compartment found in eukaryotic cells, where the chromatin is organized, folded, decoded, and duplicated. This organelle is separated from the cytoplasm by the nuclear envelope (NE), which consists of two phospholipid bilayers: the outer nuclear membrane (ONM) facing the cytoplasm, and the inner nuclear membrane (INM) connecting to the nuclear matrix. The luminal space between the ONM and INM is in continuity with the endoplasmic reticulum (ER) lumen. The NE membrane can form invaginations extending toward the nucleoplasm, called the nucleoplasmic reticulum (NR)1, which can be of two types: type 1 NR, which is an extension of the INM; and type 2 NR, which consists of the invagination of both the INM and ONM coupled with cytoplasmic structures2. The putative roles of these nuclear structures in the context of disease are currently unknown.
Many different cell types, both eukaryotic and prokaryotic, contain lipid droplets (LDs), which consist of a phospholipid monolayer encasing a core of neutral lipids (triacylglycerols and cholesterol esters, in mammalian cells). In eukaryotic cells, LDs are formed from the ER membrane, where enzymes catalyzing the last step of neutral lipid metabolism reside. Lipid esters are first synthesized and can exist in the phospholipid bilayer to a certain extent. After their content exceeds the solubility limit, they oil out of the bilayer and are sequestered between the two leaflets of the ER membrane, forming a lens-like structure. Finally, lipid esters are released to the cytoplasm, encased in a phospholipid monolayer derived from the ER membrane. After their release to the cytoplasm, the surface of cytoplasmic LDs contacts the ER membrane, allowing lipids and proteins to be bidirectionally exchanged3,4,5. LDs in the cytoplasm store neutral lipids and primarily serve as lipid reservoirs for energy production or membrane synthesis after sequential lipolysis. LDs can also store lipids that are in excess or toxic, preventing lipotoxicity in cells6. LDs function as discrete pools of multiple molecule types such as histones7, transcription factors8, or nucleoporins9, thereby regulating their temporal and spatial availability. LDs also contact other organelle membranes, and through these contacts, they are involved in various functions in lipid synthesis, autophagic and proteasomal proteolysis, and viral reproduction, among others4,5,10.
In addition to cytoplasmic LDs (cLDs), nuclear LDs have also been reported11,12. Nuclear LDs were first visualized in mammalian hepatoma cells using light microscopy13 and subsequently in rodent liver cells using electron microscopy14,15. The identification of nuclear LDs in mammalian cells has been expanded using modern microscopic techniques, by our group16,17,18 and others19,20,21,22,23. Nuclear LDs have been also found in other non-mammalian cells such as budding yeast24,25,26,27,28, plant cells29, C. elegans intestinal cells30,31, and fish hepatocytes treated with heavy metals32. Nuclear LDs can recruit and activate CDP-choline diacylglycerol phosphotransferase α (CCTα)—a rate-limiting enzyme of the de novo phosphatydilcholine (PC) synthesis pathway33—and diacylglycerol acyltransferase and be involved in PC or triglyceride synthesis in hepatoma cells and osteosarcoma cells18,21,34. In yeast, nucleoplasmic LDs (nLDs) can regulate transcription of genes related to lipid metabolism by inhibiting the activity of the transcription suppressor Opi126,27. In mammalian cells, nuclear LDs have been found to colocalize with promyelocytic leukemia (PML) bodies16,21, which are nuclear structures involved in the regulation of gene transcription35. In astrocytoma cells, fatty acid-binding protein 7 and oleic acids can accelerate the formation of nuclear LD–PML body complexes to upregulate the expression level of genes related to tumor proliferation36. Despite these important findings, the pathophysiological significance and frequency of nuclear LDs in hepatocytes in liver diseases remains unknown.
In this study, we aimed to analyze the frequency and morphology of nuclear LDs in hepatocytes and elucidate their attributes, which may be involved in their pathophysiological significance in various liver diseases. We found that nLDs accumulated in hepatocytes derived from patients with liver disorders upon ER stress. Conversely, cLDs trapped in type 2 NR correlated with lipid-restricted hepatocytes. The findings in this study provide a basis for further developments in nuclear biology research.
Results
Distinct nuclear LDs characterized in liver biopsies
Patient characteristics are summarized in Table 1. Of the 80 patients, 35 were males and 45 were females. Their mean age was 58 years (range: 24 to 89 years). Liver biopsy-proven liver diseases included nonalcoholic steatohepatitis (NASH) in 12 patients, drug-induced liver injury (DILI) in 11 patients, malignant tumor in 22 patients, autoimmune hepatitis (AIH) in 7 patients, and other diseases in 28 patients. Liver biopsies were performed in all cases due to suspicion of liver damage or liver tumor, however, pathological findings revealed "normal liver" in four cases. According to the METAVIR classification of liver fibrosis, the patients had the following scores: 39 patients with F0, 26 with F1, 3 with F2, and 5 with F3. Hematoxylin and eosin (H&E) staining revealed that the frequency of liver steatosis was < 5% in 46 patients, 5–33% in 21 patients, 33–66% in 4 patients, and > 66% in two patients. Blood profiling of the patients is summarized in Table 2. Although the levels of liver enzymes, alkaline phosphatase, and gamma-glutamyl transpeptidase were elevated, those of plasma lipids were within normal range.
Electron microscopy observations of liver biopsy samples were conducted independently from light microscopy-based clinical diagnosis (Fig. 1a). Depending on the presence of adjacent cytoplasmic invagination of the nuclear membrane, LDs in the nuclei were classified into two types: nLDs and cLDs in NR (Fig. 1b). Six patients were excluded from further analysis because the electron microscopy sample did not contain the corresponding background liver specimen. We observed that 76% of the liver biopsy specimens analyzed presented nuclear LDs in hepatocytes.
Case assessment toward liver diseases and patient profile
Three representative cases are shown in Fig. 1c–e. The first case is a female in her 70s showing mild increase in aminotransferase levels [aspartate aminotransferase (AST), 125 U/L; alanine aminotransferase (ALT), 106 U/L] and diagnosed as having NASH. Hepatocyte ballooning and mild inflammation were observed in the liver tissue, with 40% steatosis and F2 fibrosis (Fig. 1c). nLDs were found in 5.6% of nuclei, whereas cLDs in NR were not observed (Fig. 1c). The second case is a male in his 20s with elevated AST (211 U/L) and ALT (546 U/L) levels and diagnosed as having DILI. Mild inflammation in the portal area was observed in the liver tissue, with 0% steatosis and F0 fibrosis (Fig. 1d). nLDs were found in 4.2% and cLDs in NR in 1.2% of nuclei in the liver biopsy sample (Fig. 1d). The third case is a male in his 40s with mild elevations in AST (134 U/L) and ALT (250 U/L) levels and diagnosed as having AIH. Severe inflammation in the portal area was observed, with 0% steatosis and F1 fibrosis (Fig. 1e). nLDs were found in 5.7% and cLDs in NR in 5.7% hepatocyte nuclei (Fig. 1e).
Overall, nLDs were found in 69% of liver biopsy samples, and cLDs in NR were less frequent (32%; Fig. 2a, b). There was no correlation between the frequencies of nLDs and cLDs in NR (Fig. 2c). Although both nLDs and cLDs in NR are most frequently detected in AIH (Table 1), no disease-specific distributions were observed in their frequencies (Fig. 2d). These results revealed that two types of nuclear LDs occur in the human liver.
Correlation analysis of LDs and clinical parameters
Next, we studied the correlations between these two LD types in the nucleus and their clinical characteristics. Although patients who presented with nLDs showed higher levels of liver enzymes in the plasma than those without nLDs, there were no significant differences in tests depending on the presence of nLDs (Table 3). Conversely, patients who presented cLDs in NR showed significantly lower levels of total cholesterol and low-density lipoprotein (LDL) cholesterol, compared to patients without cLDs in NR (Table 3). Thus, the two LD types in the nucleus appeared to be clinically different. Furthermore, nLDs were frequently found in hepatocytes of patients with NASH; however, there was no correlation between the frequency of nLDs and hepatic steatosis, indicating that nLDs do not reflect only cytoplasmic lipid accumulation (Fig. 3a). Positive correlations were found between the frequency of nLDs and ER luminal expansion (Fig. 3b), suggesting nLD formation in the nucleus upon ER stress. Despite the presence of frequent nLDs and severe liver enzyme elevations in two cases, no discernible correlation was observed between the frequency of nLD and liver enzymes (Fig. 3c). Although cLDs in NR also showed no correlation with steatosis, livers with more than 20% steatosis did not show any cLD in NR, indicating that cLD in NR are not formed in hepatocytes with excessive cytoplasmic LDs (Fig. 3d). Furthermore, no correlations were found between the presence of cLDs in NR and ER luminal expansion or liver enzyme (Fig. 3e, f) as well as between these two nuclear LD types and the levels of lipids in the plasma (Supplementary Fig. S1). Based on these results, we speculate two distinct pathophysiological roles of nLDs and cLDs in NR in liver diseases (Fig. 4).
Discussion
The results obtained in this study revealed that two types of nuclear LDs occur in hepatocytes and uncovered correlations between them and distinct pathophysiological features in human liver disease. To date, there is only one report on the existence of nuclear LDs in human tissues in which two types of nuclear LDs were first identified in hepatocytes from a patient with hepatitis C virus infection by using sequential electron microscopy23. Our current findings expand the observations made of nLDs, which occur in the nuclear matrix, and cLDs trapped in type 2 NR, in human hepatocytes of patients with variable clinical backgrounds. In our study, we used electron microscopy to study the ultrastructural components in the nuclei of hepatocytes. This approach unveiled previously unknown characteristics of nuclear LDs based on the presence of adjacent cytoplasmic invagination of the nuclear membrane. Distinguishing these two types of nuclear LDs was only possible with electron microscopy.
Although more detailed analyses are required to identify the functions of both types of nuclear LDs in human hepatocytes, we hypothesize on the physiological significance of LDs in the nucleus (Fig. 4). In hepatocytes, lipids stored in cLDs are released by lipolysis and can be re-used in the ER lumen to generate precursors of very low-density lipoprotein (VLDL)37. We previously reported that after VLDL secretion is suppressed under ER stress conditions in hepatoma cells and mouse liver hepatocytes, lipoprotein precursors accumulate in the lumen of the ER and are then transferred into the nucleus through the invagination of the INM, which corresponds to type 1 NR. These luminal LDs derived from lipoprotein precursors are then converted to nLDs in the nucleoplasm after budding from the INM membrane16,17. nLDs can recruit and activate CCTα to its surface phospholipid monolayer17,21 and can be a platform to synthesize PC, leading to increased membrane synthesis and expansion of the ER volume, which counteracts ER stress12. In the present study, we found that hepatocytes with minimal hepatic damage do not present intranuclear LDs, whereas under ER stress involving liver enlargement, 5–10% of hepatocytes show intranuclear LDs. Thus, we hypothesize that nLDs have a role in enhancing PC synthesis to reduce ER stress in various liver diseases (Fig. 4, left model). Conversely, the frequency of cLDs in NR was relatively higher in hepatocytes from patients with lower plasma LDL levels. The function of type 2 NR has been proposed in several reports: nuclear calcium transient in cardiomyocytes38; accumulation of mRNA in the surrounding cytoplasmic area and activation of protein translation39, and a compartment of active PC synthesis in pre-adipocytes and fibroblasts40. The specific roles of type 2 NR in hepatocytes are unknown; however, our findings suggest that cLDs may be first sequestered in type 2 NR and separated from the ER, causing limited lipid transfer between the two organelles. This could then result in a decrease in lipoprotein synthesis in the patient’s liver (Fig. 4, right model).
Several proteins have been proposed to regulate NR membrane invaginations; however, it is difficult to discriminate between the two types of membrane invaginations without electron microscopy imaging. Lamins, CCTα,41,42 and the INM protein emerin38 have been suggested as positive regulators. PML isoform II can facilitate the formation of nLDs as well as type 1 NR by overcoming the effects of negative NR regulators such as Reeps (ER shaping proteins)43 and Suns (INM proteins connecting cytoplasmic/nucleoplasmic skeleton fibers)16,44. Moreover, in yeast, the increased amount of cellular sterols and accumulation of phosphatidic acids in the nuclear membrane can accelerate the invagination of the NE while trapping cytoplasmic materials, as these lipids tend to induce negative curvature of the membrane45. In our study, patients with low levels of sterols (total cholesterol and LDL-cholesterol) in the plasma showed relatively more cLDs trapped in type 2 NR, suggesting that sterols are highly sequestered in cellular membranes (e.g. nuclear membrane), which may initiate invaginations of both the ONM and INM in hepatocytes. Our study also showed that cLDs in NR are fewer in hepatocytes derived from patients’ liver with more than 20% steatosis. In such cLD-abundant hepatocytes, cholesterols will be accumulated as cholesterol esters in cLDs rather than as free cholesterol in cellular membranes, which may inhibit the formation of type 2 NR-trapped cLDs (Fig. 4, right model). Furthermore, depletion of the ER transmembrane protein Seipin and its homologs tends to increase the amount of intranuclear LDs in yeast24,25, plant cells29, intestinal and germ cells in C. elegans30, and human osteosarcoma cells18. In mammalian cells, seipin seems to act as a switching molecule to determine cytoplasmic/nucleoplasmic LD formation likely by regulating the translocation of lipid-synthesizing enzymes from the ONM to the INM, where lipid esters are synthesized to form nLDs12,18. Such direct nLD formation machinery could be present in not only non-hepatic cells but also hepatocytes, in addition to the type 1 NR-mediated mechanism. Further studies are required to identify the expression patterns of such molecules mentioned above in patients with liver diseases, which will clarify the molecular mechanisms that induce the formation of nuclear LDs and invagination of nuclear membranes.
Even in the limited number of studied cases, it is evident that nLDs are abundant in patients with NASH and DILI and cLDs in NR in patients with DILI and AIH. Although nLDs were frequently found in hepatocytes of patients with NASH, no cLDs in NR were observed. Further studies are warranted to elucidate the pathophysiological significance of nLDs and cLDs in NR in different diseases. As we had included only diseased livers, additional studies are needed on healthy liver tissue, to discriminate between putative physiological roles of these droplets.
In summary, we explored the pathophysiological features of intranuclear LDs in liver diseases and found that nLDs were frequently observed in hepatocytes of patients with AIH, DILI, and NASH. In contrast, cLDs in NR were not observed in NASH liver, suggesting that formation of cLDs in NR is inhibited in cLDs-abundant hepatocytes. Together, our results unveiled the presence of nuclear LDs in human hepatocytes and their correlation with the nuclear ultrastructure underlying pathological conditions.
Methods
Informed consent
Written informed consent for sample collection was obtained before the biopsy. This study was conducted in accordance with the principles of the Declaration of Helsinki and was approved by the Bioethics Review Committee of Nagoya University Hospital (2020-0229).
Human liver biopsy sample
Eighty patients who underwent liver biopsies for liver disease diagnosis at the Nagoya University Hospital (Nagoya, Aichi, Japan) were included in this study (Fig. 1a). Liver biopsy procedures were performed percutaneously using an ultrasound imaging guide. Briefly, disinfectant was applied below the right rib cage, and a small incision was made after application of a local anesthetic. A biopsy needle (16G Bard Monopty Biopsy Gun, Bard Peripheral Vascular, Inc., Tempe, AZ, USA) was inserted into the right lobe of the liver. A part of the liver biopsy specimen (approximately 1 mm3) was dissected using a scalpel and fixed in 0.1 M cacodylate buffer containing 2.5% glutaraldehyde. In cases of biopsies aiming at liver tumor diagnosis, a portion of surrounding normal liver tissue was also collected for electron microscopy. A mixture of 1% osmium tetroxide and 0.1% potassium ferrocyanide in 0.1 M sodium cacodylate buffer was added post-fixation. The samples were embedded in epoxy resin, and ultrathin sections were imaged using a JEOL JEM-1400PLUS electron microscope (JEOL Ltd., Tokyo, Japan) operated at 100 kV. Digital images were captured using an EM-14661FLASH camera (JEOL Ltd.). LDs in the nucleus were classified into two types, depending on the presence of adjacent cytoplasmic invagination with nuclear membrane: nLDs and cLD invagination with NR (cLDs in NR) (Fig. 1b)2.
Histological assessment
Histological assessment of hepatocyte ultrastructures was performed independently in the absence of clinical information. The frequencies of nLDs and cLDs in NR were determined by counting more than 100 nuclei per specimen. For each specimen, a single section was used for electron microscopy analysis. Additional sections were used in cases of insufficient fields of view or when the number of hepatocytes was low. The maximum vertical diameter of the rough ER close to the nucleus (for areas of the ER less than 2.0 µm from the ONM) was measured at three points from three random images, and the average value determined. The vertical diameter was defined as the diameter of the tubules that are perpendicular to the plane of the section. The METAVIR scoring system was used to assess fibrosis and inflammation, which is a widely used scoring system for the histological assessment of liver disease, specifically for the classification of chronic liver disease and its severity46. Liver steatosis was scored based on the nonalcoholic fatty liver disease (NAFLD) Activity Score, which is a semi-quantitative scoring system for the assessment of liver histology in patients with NAFLD47. This grading is based on the visual analysis of liver biopsy specimens and the assessment of the amount of lipid accumulation in hepatocytes.
Clinical tests
Blood samples were collected one day before liver biopsies. All laboratory tests were performed at Nagoya University Hospital. Liver biopsy samples were fixed and embedded in paraffin for H&E staining. Histological diagnosis was made by certificated pathologists.
Statistical analysis
Correlations were analyzed using the maximal information-based nonparametric exploration (MINE) method48, which captures a wide range of associations, both functional and otherwise. The MINE statistics provide quantitative evaluations of different aspects of the relationship between two variables. In particular, MINE returns three statistics: maximal information coefficient (MIC), maximum asymmetry score (MAS), and MIC-R2. MIC relates to the strength of the relationship and can be interpreted as a correlation measure. The MIC value ranges [0–1], tending to 0 for statistically independent data and approaching 1 in probability for noiseless relationships. MAS represents the deviation from monotonicity. Larger MAS values mean not monotonic samples. MIC-R2 is the difference between the MIC value and the Pearson’s correlation coefficient; therefore, larger MIC-R2 values correspond to nonlinear regressions. Correlation coefficients were calculated for those correlations with an MIC value of 0.5 or greater, depending on the relationship type. Student’s t-test was used to compare the differences in blood parameters for liver biopsies with and without LDs in the nucleus. Statistical significance was defined at P < 0.05.
MINE statistics were calculated with EZR (Saitama Medical Center, Jichi Medical University, Saitama, Japan), which is a graphical user interface for R (The R Foundation for Statistical Computing, Vienna, Austria)49.
All graphs were generated using GraphPad Prism version 9 (GraphPad Software, San Diego, CA, USA).
Data availability
The data that support the findings of this study are available from corresponding authors on request.
Abbreviations
- AIH:
-
Autoimmune hepatitis
- ALT:
-
Alanine aminotransferase
- AST:
-
Aspartate aminotransferase
- CCTα:
-
CDP-choline diacylglycerol phosphotransferase α
- cLD:
-
Cytoplasmic lipid droplet
- DILI:
-
Drug-induced liver injury
- ER:
-
Endoplasmic reticulum
- H&E:
-
Hematoxylin and eosin
- INM:
-
Inner nuclear membrane
- LD:
-
Lipid droplet
- LDL:
-
Low-density lipoprotein
- MAS:
-
Maximum asymmetry score
- MIC:
-
Maximal information coefficient
- MINE:
-
Maximal information-based nonparametric exploration
- NAFLD:
-
Nonalcoholic fatty liver disease
- NASH:
-
Nonalcoholic steatohepatitis
- NE:
-
Nuclear envelope
- nLD:
-
Nucleoplasmic lipid droplet
- NR:
-
Nucleoplasmic reticulum
- ONM:
-
Outer nuclear membrane
- PC:
-
Phosphatydilcholine
- PML:
-
Promyelocytic leukemia
- VLDL:
-
Very low-density lipoprotein
References
Echevarría, W., Leite, M. F., Guerra, M. T., Zipfel, W. R. & Nathanson, M. H. Regulation of calcium signals in the nucleus by a nucleoplasmic reticulum. Nat. Cell Biol. 5, 440–446. https://doi.org/10.1038/ncb980 (2003).
Malhas, A., Goulbourne, C. & Vaux, D. J. The nucleoplasmic reticulum: Form and function. Trends Cell Biol. 21, 362–373. https://doi.org/10.1016/j.tcb.2011.03.008 (2011).
Ben M’barek, K. et al. ER membrane phospholipids and surface tension control cellular lipid droplet formation. Dev. Cell 41, 591-604.e7. https://doi.org/10.1016/j.devcel.2017.05.012 (2017).
Walther, T. C., Chung, J. & Farese, R. V. Jr. Lipid droplet biogenesis. Annu. Rev. Cell Dev. Biol. 33, 491–510. https://doi.org/10.1146/annurev-cellbio-100616-060608 (2017).
Olzmann, J. A. & Carvalho, P. Dynamics and functions of lipid droplets. Nat. Rev. Mol. Cell Biol. 20, 137–155. https://doi.org/10.1038/s41580-018-0085-z (2019).
Petschnigg, J. et al. Good fat, essential cellular requirements for triacylglycerol. Synthesis to Maintain Membrane Homeostasis in Yeast. J. Biol. Chem. 284, 30981–30993. https://doi.org/10.1074/jbc.M109.024752 (2009).
Cermelli, S., Guo, Y., Gross, S. P. & Welte, M. A. The lipid-droplet proteome reveals that droplets are a protein-storage depot. Curr. Biol. 16, 1783–1795. https://doi.org/10.1016/j.cub.2006.07.062 (2006).
Mejhert, N. et al. Partitioning of MLX-family transcription factors to lipid droplets regulates metabolic gene expression. Mol. Cell 77, 1251–1264. https://doi.org/10.1016/j.molcel.2020.01.014 (2020).
Kumanski, S., Viart, B. T., Kossida, S. & Moriel-Carretero, M. Lipid droplets are a physiological nucleoporin reservoir. Cells 10, 472. https://doi.org/10.3390/cells10020472 (2021).
Welte, M. A. Expanding roles for lipid droplets. Curr. Biol. 25, R470–R481. https://doi.org/10.1016/j.cub.2015.04.004 (2015).
Sołtysik, K., Ohsaki, Y. & Fujimoto, T. Duo in a mystical realm—Nuclear lipid droplets and the inner nuclear membrane. Contact https://doi.org/10.1177/2515256419896965 (2019).
Fujimoto, T. Nuclear lipid droplets—How are they different from their cytoplasmic siblings?. J. Cell Sci. 135, 259253. https://doi.org/10.1242/jcs.259253 (2022).
Leduc, E. H. & Wilson, J. W. A histochemical study of intranuclear inclusions in mouse liver and hepatoma. J. Histochem. Cytochem. 7, 8–16. https://doi.org/10.1177/7.1.8 (1959).
Leduc, E. H. & Wilson, J. W. An electron microscope study of intranuclear inclusions in mouse liver and hepatoma. J. Biophys. Biochem. Cytol. 6, 427–430. https://doi.org/10.1083/jcb.6.3.427 (1959).
Thoenes, W. Fat in the nucleolus. J. Ultrastruct. Res. 10, 194–206. https://doi.org/10.1016/s0022-5320(64)80004-6 (1964).
Ohsaki, Y. et al. PML isoform II plays a critical role in nuclear lipid droplet formation. J. Cell Biol. 212, 29–38. https://doi.org/10.1083/jcb.201507122 (2016).
Sołtysik, K., Ohsaki, Y., Tatematsu, T., Cheng, J. & Fujimoto, T. Nuclear lipid droplets derive from a lipoprotein precursor and regulate phosphatidylcholine synthesis. Nat. Commun. 10, 473. https://doi.org/10.1038/s41467-019-08411-x (2019).
Sołtysik, K. et al. Nuclear lipid droplets form in the inner nuclear membrane in a seipin-independent manner. J. Cell Biol. 220, e202005026. https://doi.org/10.1083/jcb.202005026 (2021).
Layerenza, J. P. et al. Nuclear lipid droplets: A novel nuclear domain. Biochim. Biophys. Acta 1831, 327–340. https://doi.org/10.1016/j.bbalip.2012.10.005 (2013).
Wang, L. et al. Specific accumulation of lipid droplets in hepatocyte nuclei of PFOA-exposed BALB/c mice. Sci. Rep. 3, 2174. https://doi.org/10.1038/srep02174 (2013).
Lee, J., Salsman, J., Foster, J., Dellaire, G. & Ridgway, N. D. Lipid-associated PML structures assemble nuclear lipid droplets containing CCTalpha and Lipin1. Life Sci. Alliance 3, e202000751. https://doi.org/10.26508/lsa.202000751 (2020).
Morales, A. et al. Loss of ephrin B2 receptor (EPHB2) sets lipid rheostat by regulating proteins DGAT1 and ATGL inducing lipid droplet storage in prostate cancer cells. Lab. Invest. 101, 921–934. https://doi.org/10.1038/s41374-021-00583-9 (2021).
Uzbekov, R. & Roingeard, P. Nuclear lipid droplets identified by electron microscopy of serial sections. BMC Res. Notes 6, 386. https://doi.org/10.1186/1756-0500-6-386 (2013).
Cartwright, B. R. et al. Seipin performs dissectible functions in promoting lipid droplet biogenesis and regulating droplet morphology. Mol. Biol. Cell 26, 726–739. https://doi.org/10.1091/mbc.E14-08-1303 (2015).
Wolinski, H. et al. Seipin is involved in the regulation of phosphatidic acid metabolism at a subdomain of the nuclear envelope in yeast. Biochim. Biophys. Acta 1851, 1450–1464. https://doi.org/10.1016/j.bbalip.2015.08.003 (2015).
Romanauska, A. & Köhler, A. The inner nuclear membrane is a metabolically active territory that generates nuclear lipid droplets. Cell 174, 700-715.e18. https://doi.org/10.1016/j.cell.2018.05.047 (2018).
Romanauska, A. & Köhler, A. Reprogrammed lipid metabolism protects inner nuclear membrane against unsaturated fat. Dev. Cell 56, 2562-2578.e3. https://doi.org/10.1016/j.devcel.2021.07.018 (2021).
Kumanski, D., Forey, R., Cazevieille, C. & Moriel-Carretero, M. Nuclear lipid droplet birth during replicative stress. Cells 11, 1390. https://doi.org/10.3390/cells11091390 (2022).
Taurino, M. et al. SEIPIN proteins mediate lipid droplet biogenesis to promote pollen transmission and reduce seed dormancy. Plant Physiol. 176, 1531–1546. https://doi.org/10.1104/pp.17.01430 (2018).
Mosquera, J. V., Bacher, M. C. & Priess, J. R. Nuclear lipid droplets and nuclear damage in Caenorhabditis elegans. PLoS Genet. 17, e1009602. https://doi.org/10.1371/journal.pgen.1009602 (2021).
Palikaras, K. et al. Age-dependent nuclear lipid droplet deposition is a cellular hallmark of aging in Caenorhabditis elegans. Aging Cell https://doi.org/10.1111/acel.13788 (2023).
Liu, X. H. et al. Exposure to acute waterborne cadmium caused severe damage on lipid metabolism of freshwater fish, revealed by nuclear lipid droplet deposition in hepatocytes of rare minnow. Aquat. Toxicol. 257, 106433. https://doi.org/10.1016/j.aquatox.2023.106433 (2023).
Cornell, R. B. & Ridgway, N. D. CTP: phosphocholine cytidylyltransferase: Function, regulation, and structure of an amphitropic enzyme required for membrane biogenesis. Prog. Lipid Res. 59, 147–171. https://doi.org/10.1016/j.plipres.2015.07.001 (2015).
McPhee, M. J. et al. Running “LAPS” around nLD: Nuclear lipid droplet form and function. Front. Cell Dev. Biol. 10, 837406. https://doi.org/10.3389/fcell.2022.837406 (2022).
Kurihara, M. et al. Genomic profiling by ALaP-Seq reveals transcriptional regulation by PML bodies through DNMT3A exclusion. Mol. Cell 78, 493-505.e8. https://doi.org/10.1016/j.molcel.2020.04.004 (2020).
Umaru, B. A. et al. Oleic acid-bound FABP7 drives glioma cell proliferation through regulation of nuclear lipid droplet formation. FEBS J. https://doi.org/10.1111/febs.16672 (2022).
Olofsson, S. O. & Borén, J. Apolipoprotein B secretory regulation by degradation. Arterioscler. Thromb. Vasc. Biol. 32, 1334–1338. https://doi.org/10.1161/ATVBAHA.112.251116 (2012).
Shimojima, M. et al. Emerin plays a crucial role in nuclear invagination and in the nuclear calcium transient. Sci. Rep. 7, 44312. https://doi.org/10.1038/srep44312 (2017).
Saltel, F. et al. Unr defines a novel class of nucleoplasmic reticulum involved in mRNA translation. J. Cell Sci. 130, 1796–1808. https://doi.org/10.1242/jcs.198697 (2017).
Drozdz, M. M., Jiang, H., Pytowski, L., Grovenor, C. & Vaux, D. J. Formation of a nucleoplasmic reticulum requires de novo assembly of nascent phospholipids and shows preferential incorporation of nascent lamins. Sci. Rep. 7, 7454. https://doi.org/10.1038/s41598-017-07614-w (2017).
Gehrig, K. & Ridgway, N. D. CTP: phosphocholine cytidylyltransferase α (CCTα) and lamins alter nuclear membrane structure without affecting phosphatidylcholine synthesis. Biochim. Biophys. Acta 1811, 377–385. https://doi.org/10.1016/j.bbalip.2011.04.001 (2011).
Goulbourne, C. N., Malhas, A. N. & Vaux, D. J. The induction of a nucleoplasmic reticulum by prelamin A accumulation requires CTP: phosphocholine cytidylyltransferase-α. J. Cell Sci. 124, 4253–4266. https://doi.org/10.1242/jcs.091009 (2011).
Schlaitz, A. L., Thompson, J., Wong, C. C., Yates, J. R. 3rd. & Heald, R. REEP3/4 ensure endoplasmic reticulum clearance from metaphase chromatin and proper nuclear envelope architecture. Dev. Cell 26, 315–323. https://doi.org/10.1016/j.devcel.2013.06.016 (2013).
Turgay, Y. et al. SUN proteins facilitate the removal of membranes from chromatin during nuclear envelope breakdown. J. Cell Biol. 204, 1099–1109. https://doi.org/10.1083/jcb.201310116 (2014).
Garcia, M. et al. Nuclear ingression of cytoplasmic bodies accompanies a boost in autophagy. Life Sci. Alliance 5, e202101160. https://doi.org/10.26508/lsa.202101160 (2022).
The French METAVIR Cooperative Study Group. Intraobserver and interobserver variations in liver biopsy interpretation in patients with chronic hepatitis C. Hepatology 20, 15–20 (1994).
Kleiner, D. E. et al. Design and validation of a histological scoring system for nonalcoholic fatty liver disease. Hepatology 41, 1313–1321. https://doi.org/10.1002/hep.20701 (2005).
Reshef, D. N. et al. Detecting novel associations in large data sets. Science 334, 1518–1524. https://doi.org/10.1126/science.1205438 (2011).
Kanda, Y. Investigation of the freely available easy-to-use software “EZR” for medical statistics. Bone Marrow Transplant 48, 452–458. https://doi.org/10.1038/bmt.2012.244 (2013).
Acknowledgements
This work was supported by Takeda Science Foundation to NI and YO, and supported by JSPS KAKENHI Grant Number 21K06733 to YO. Some of the figures were generated using images from Servier Medical Art, which is licensed under a Creative Commons Attribution 3.0 Unported License. The authors acknowledge the Division for Medical Research Engineering, Nagoya University Graduate School of Medicine, for the usage of transmission electron microscopy.
Author information
Authors and Affiliations
Contributions
Concept and study design: N.I. and Y.O. Acquisition of data: N.I., J.C., J.Z., F.M., K.Y., T.I., Y.I., T.H., M.I., H.K., H.W., and Y.O. Writing manuscript: N.I. and Y.O. Statistical analysis: N.I.
Corresponding authors
Ethics declarations
Competing interests
The authors declare no competing interests.
Additional information
Publisher's note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Supplementary Information
Rights and permissions
Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
About this article
Cite this article
Imai, N., Ohsaki, Y., Cheng, J. et al. Distinct features of two lipid droplets types in cell nuclei from patients with liver diseases. Sci Rep 13, 6851 (2023). https://doi.org/10.1038/s41598-023-33977-4
Received:
Accepted:
Published:
DOI: https://doi.org/10.1038/s41598-023-33977-4
Comments
By submitting a comment you agree to abide by our Terms and Community Guidelines. If you find something abusive or that does not comply with our terms or guidelines please flag it as inappropriate.