Correction to: Scientific Reports https://doi.org/10.1038/s41598-022-23287-6, published online 06 November 2022
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Characterization of the bacterial communities in hive entrance samples. (a) Significantly enriched bacteria in each environment, according to LEfSe. Agricultural hives were rich in Gammaproteobacteria and Lactococcus. The classes Actinobacteria and Bacteroidia were prevalent in natural samples. Semi-natural samples were enriched in the Sphingomonas genus (LDA > 5.0), the Bacilli class, genera from the Alphaproteobacteria (Bradyrhizobium, Phyllobacterium) and Gammaproteobacteria (Enhydrobacter) classes, as well as genera from the Firmicutes, Gemmatimonadetes (Gemmatimonas and an uncultured genus), and Actinobacteria phyla. (b) Spearman correlation analysis at p < 0.05. Positive values were particularly high for Curtobacterium/Hymenobacter, Phyllobacterium/Sphingomonas and Phyllobacterium/Bradyrhizobium interactions (R > 0.80, p < 0.0001). The most negative interactions were found between Arsenophonus/Spirosoma and Arsenophonus/Nocardioides (R ⋍ − 0.6, p < 0.001). (c) Principal Coordinate Analysis (PCoA) of samples according to the predictive functional profile (MetaCyc pathways). (d) Significantly recruited functions according to LEfSe. (e) Significantly enriched enzymes according to LEfSe. The enzymes Endo X3 (EC 3.1.22.4) and coenzyme Q reductase (EC 7.1.1.2, formerly EC 1.6.5.3) were agricultural representatives, while tryptophan 7-halogenase (EC 1.14.19.9) was enriched in semi-natural samples. Bifido shunt: Bifidobacterium shunt, L-Met transS: l-methionine biosynthesis (transsulfuration), TCA VII: TCA cycle VII (acetate-producers), L-Met syn I: l-methionine biosynthesis I, S-Adenosyl-l-Met: S-adenosyl-l-methionine biosynthesis, Gondoate syn: gondoate biosynthesis (anaerobic), Denovopurine II: purine nucleotides de novo biosynthesis II, Pyrimidine syn II: pyrimidine deoxyribonucleotides de novo biosynthesis II, Pyridoxal syn I: pyridoxal 5′-phosphate biosynthesis I, 8-amino-7-oxo: 8-amino-7-oxononanoate biosynthesis I, tRNA processing: tRNA processing, Biotin syn: biotin biosynthesis I, PRPP: histidine, purine, and pyrimidine biosynthesis, KDO Lipid A syn: (Kdo)2-lipid A biosynthesis, Pyridoxal sal: pyridoxal 5′-phosphate biosynthesis and salvage, NAD sal III: NAD salvage pathway III (to nicotinamide riboside), ppGpp: ppGpp metabolism, LPS syn: lipopolysaccharide biosynthesis, Mycolate syn: mycolate biosynthesis, Oleate syn IV: oleate biosynthesis IV (anaerobic), (5Z)-Dode syn I: (5Z)-dodecenoate biosynthesis I. Plotting: Cladograms and histograms of LEfSe results were plotted in Galaxy (web application, https://huttenhower.sph.harvard.edu/galaxy/) and taxa names cleaned with INKSCAPE (v0.92.3-1, https://inkscape.org/). PCoAs were plotted using Vega editor (v5.22.1, https://vega.github.io/editor/#/).
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Gorrochategui-Ortega, J., Muñoz-Colmenero, M., Kovačić, M. et al. Publisher Correction: A short exposure to a semi-natural habitat alleviates the honey bee hive microbial imbalance caused by agricultural stress. Sci Rep 12, 22237 (2022). https://doi.org/10.1038/s41598-022-25981-x
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DOI: https://doi.org/10.1038/s41598-022-25981-x
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