By studying the folding of chromosomes relative to nuclear bodies in single-cell models, we reveal specialized subnuclear microenvironments linked to specific gene functions. Our models provide insights into a variety of structural features of the genome and unveil key structure–function correlations.
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References
Belmont, A. S. Nuclear compartments: an incomplete primer to nuclear compartments, bodies, and genome organization relative to nuclear architecture. Cold Spring Harb. Perspect. Biol. 14, a041268 (2022). This review article discusses possible functions of nuclear compartments.
Dekker, J. et al. The 4D Nucleome project. Nature 549, 219–226 (2017). This paper explains the goals of the 4D Nucleome consortium and a variety of experimental methods in genome biology.
Boninsegna, L. et al. Integrative genome modeling platform reveals essentiality of rare contact events in 3D genome organizations. Nat. Methods 19, 938–949 (2022). This paper introduces the integrative genome modeling platform for generating a population of diploid three-dimensional genome structures.
Rao, S. S. et al. A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell 159, 1665–1880 (2014). This paper reports a Hi-C map of the human genome at kilobase resolution.
Boninsegna, L. et al. Integrative approaches in genome structure analysis. Structure 30, 24–36 (2022). This review article discusses integrative methods for genome structure modeling and imaging.
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This is a summary of: Yildirim, A. et al. Evaluating the role of the nuclear microenvironment in gene function by population-based modeling. Nat. Struct. Mol. Biol. https://doi.org/10.1038/s41594-023-01036-1 (2023).
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Studying the impact of the nuclear topography on gene function. Nat Struct Mol Biol 30, 1062–1063 (2023). https://doi.org/10.1038/s41594-023-01051-2
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DOI: https://doi.org/10.1038/s41594-023-01051-2