How accurate is the prediction of protein structure by AlphaFold? Terwilliger et al. address this question with a rigorous assessment of the accuracy of AlphaFold-predicted structures by comparing them with experimentally determined X-ray crystallographic data.
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References
Jumper, J. et al. Nature 596, 583–589 (2021).
Varadi, M. et al. Nucleic Acids Res. 50, D439–D444 (2022). D1.
Baek, M. et al. Science 373, 871–876 (2021).
Evans, R. et al. Preprint at bioRxiv https://doi.org/10.1101/2021.10.04.463034 (2021).
Lin, Z. et al. Science 379, 1123–1130 (2023).
Ourmazd, A., Moffat, K. & Lattman, E. E. Nat. Methods 19, 24–26 (2022).
Terwilliger, T. C. et al. Nat. Methods https://doi.org/10.1038/s41592-023-02087-4 (2023).
Fontana, P. et al. Science 376, eabm9326 (2022).
Karelina, M., Noh, J. J. & Dror, R. O. eLife 12, RP89386 (2023).
Wong, F. et al. Mol. Syst. Biol. 18, e11081 (2022).
Scardino, V., Di Filippo, J. I. & Cavasotto, C. N. iScience 26, 105920 (2022).
Krishna, R. et al. Preprint at bioRxiv https://doi.org/10.1101/2023.10.09.561603 (2023).
Wallner, B. Proteins 91, 1734–1746 (2023).
Zheng, W., Wuyun, Q., Freddolino, P. L. & Zhang, Y. Proteins 91, 1684–1703 (2023).
Watson, J. L. et al. Nature 620, 1089–1100 (2023).
Alamdari, S. et al. Protein generation with evolutionary diffusion: sequence is all you need. bioRxiv Preprint at https://doi.org/10.1101/2023.09.11.556673 (2023).
Acknowledgements
I thank A. Fraser and A. Mukhopadhyay for insightful discussions. S.S. is the Gobind Khorana Chair for Cancer Drug Design at the University of British Columbia, supported by a Canada Excellence Research Chair award and by grants from the VGH Foundation, the Tai Hung Fai Charitable Foundation, and the Alzheimer Society of Canada.
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S.S. is the founder and CEO of Gandeeva Therapeutics, a drug discovery company based in Vancouver, Canada.
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Subramaniam, S. Structural biology in the age of AI. Nat Methods 21, 18–19 (2024). https://doi.org/10.1038/s41592-023-02123-3
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DOI: https://doi.org/10.1038/s41592-023-02123-3