The development of systems combining rapid volumetric imaging with three-dimensional tracking has enabled the measurement of brain-wide dynamics in freely behaving animals such as worms, flies, and fish. These advances provide an exciting opportunity to understand the organization of neural circuits in the context of voluntary and natural behaviors. In this Comment, we highlight recent progress in this burgeoning area of research.
This is a preview of subscription content
Access options
Subscribe to Nature+
Get immediate online access to the entire Nature family of 50+ journals
$29.99
monthly
Subscribe to Journal
Get full journal access for 1 year
$119.00
only $9.92 per issue
All prices are NET prices.
VAT will be added later in the checkout.
Tax calculation will be finalised during checkout.
Buy article
Get time limited or full article access on ReadCube.
$32.00
All prices are NET prices.
References
Nguyen, J. P. et al. Proc. Natl. Acad. Sci. USA 113, E1074–E1081 (2016).
Venkatachalam, V. et al. Proc. Natl. Acad. Sci. USA 113, E1082–E1088 (2016).
Cong, L. et al. eLife 6, e28158 (2017).
Kim, D. H. et al. Nat. Methods 14, 1107–1114 (2017).
Symvoulidis, P. et al. Nat. Methods 14, 1079–1082 (2017).
Fosque, B. F. et al. Science 347, 755–760 (2015).
Ahrens, M. B. et al. Nature 485, 471–477 (2012).
Kato, S. et al. Cell 163, 656–669 (2015).
Schrödel, T., Prevedel, R., Aumayr, K., Zimmer, M. & Vaziri, A. Nat. Methods 10, 1013–1020 (2013).
Naumann, E. A. et al. Cell 167, 947–960 (2016).
Abrahamsson, S. et al. Biomed. Opt. Express 7, 855–869 (2016).
Dunn, T. W. et al. Neuron 89, 613–628 (2016).
Kawashima, T., Zwart, M. F., Yang, C. T., Mensh, B. D. & Ahrens, M. B. Cell 167, 933–946 (2016).
Chhetri, R. K. et al. Nat. Methods 12, 1171–1178 (2015).
Bouchard, M. B. et al. Nat. Photonics 9, 113–119 (2015).
Karagyozov, D., Mihovilovic Skanata, M., Lesar, A. & Gershow, M. Cell Rep. 25, 1371–1383 (2018).
Friedrich, J. et al. PLoS Comput. Biol. 13, e1005685 (2017).
Friedrich, J., Zhou, P. & Paninski, L. PLoS Comput. Biol. 13, e1005423 (2017).
Nguyen, J. P., Linder, A. N., Plummer, G. S., Shaevitz, J. W. & Leifer, A. M. PLoS Comput. Biol. 13, e1005517 (2017).
Day, R. N. & Davidson, M. W. Chem. Soc. Rev. 38, 2887–2921 (2009).
Livet, J. et al. Nature 450, 56–62 (2007).
Weissman, T. A. & Pan, Y. A. Genetics 199, 293–306 (2015).
Hobert, O., Glenwinkel, L. & White, J. Curr. Biol. 26, R1197–R1203 (2016).
Jenett, A. et al. Cell Rep. 2, 991–1001 (2012).
Marquart, G. D. et al. Front. Neural Circuits 9, 78 (2015).
Kabra, M., Robie, A. A., Rivera-Alba, M., Branson, S. & Branson, K. Nat. Methods 10, 64–67 (2013).
Berman, G. J., Bialek, W. & Shaevitz, J. W. Proc. Natl. Acad. Sci. USA 113, 11943–11948 (2016).
Liu, M., Sharma, A. K., Shaevitz, J. W. & Leifer, A. M. eLife 7, e36419 (2018).
Dupre, C. & Yuste, R. Curr. Biol. 27, 1085–1097 (2017).
Chartier, T. F., Deschamps, J., Dürichen, W., Jékely, G. & Arendt, D. Open Biol. 8, 180139 (2018).
Knott, G. J. & Doudna, J. A. Science 361, 866–869 (2018).
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
Competing interests
The authors declare no competing interests.
Rights and permissions
About this article
Cite this article
Calarco, J.A., Samuel, A.D.T. Imaging whole nervous systems: insights into behavior from worms to fish. Nat Methods 16, 14–15 (2019). https://doi.org/10.1038/s41592-018-0276-8
Published:
Issue Date:
DOI: https://doi.org/10.1038/s41592-018-0276-8