This is a preview of subscription content, access via your institution
Relevant articles
Open Access articles citing this article.
-
The Ihara zeta function as a partition function for network structure characterisation
Scientific Reports Open Access 08 August 2024
-
Prognostic and therapeutic value of the Eph/Ephrin signaling pathway in pancreatic cancer explored based on bioinformatics
Scientific Reports Open Access 31 July 2024
-
DeepPIG: deep neural network architecture with pairwise connected layers and stochastic gates using knockoff frameworks for feature selection
Scientific Reports Open Access 06 July 2024
Access options
Access Nature and 54 other Nature Portfolio journals
Get Nature+, our best-value online-access subscription
$29.99 / 30 days
cancel any time
Subscribe to this journal
Receive 12 print issues and online access
$209.00 per year
only $17.42 per issue
Buy this article
- Purchase on SpringerLink
- Instant access to full article PDF
Prices may be subject to local taxes which are calculated during checkout
Code availability
Software code of the ICGC infrastructure, including the ICGC Data Portal, is available at https://github.com/icgc-dcc under the GNU General Public License Version 3.
Data availability
The ICGC dataset is available at https://dcc.icgc.org/. Data access is governed by the ICGC Data Access Office for non-US projects and by the dbGaP Authorized Access program for US-based projects.
References
Noor, A. M., Holmberg, L., Gillett, C. & Grigoriadis, A. Br. J. Cancer 113, 10 (2015).
Zhang, J. et al. Database 2011, bar026 (2011).
Taylor, R. C. BMC Bioinformatics 11 (2010).
Cingolani, P. et al. Fly (Austin) 6, 80–92 (2012).
Shihab, H. A. et al. Hum. Genomics 8, 11 (2014).
Futreal, P. A. et al. Nat. Rev. Cancer 4, 177–183 (2004).
Fabregat, A. et al. Nucleic Acids Res. 46, D649–D655 (2018).
Ashburner, M. et al. Nat. Genet. 25, 25–29 (2000).
The Gene Ontology Consortium. Nucleic Acids Res. 47, D330–D338 (2019).
Zerbino, D. R. et al. Nucleic Acids Res. 46, D754–D761 (2018).
UniProt Consortium. Nucleic Acids Res. 47, D506–D515 (2019).
Irwin, J. J., Sterling, T., Mysinger, M. M., Bolstad, E. S. & Coleman, R. G. J. Chem. Inf. Model. 52, 1757–1768 (2012).
Griffith, M. et al. Nat. Genet. 49, 170–174 (2017).
Landrum, M. J. et al. Nucleic Acids Res. 46, D1062–D1067 (2018).
Pérez, F. & Granger, B. E. Comput. Sci. Eng. 9, 21–29 (2007).
Acknowledgements
The authors received support for this work from the Ontario Institute for Cancer Research (OICR) through funding provided by the government of Ontario.
Author information
Authors and Affiliations
Contributions
V.F. and J.Z. led the system design and implementation with contributions from L.D.S., D.A. and R.B.; D.A. and A.L. contributed to the software architecture design and coding; J.Z., R.B. and H.N.-B. contributed to system quality control; F.G. managed the software developer team. The manuscript was prepared by R.B. and V.F. with contributions from L.D.S., J.Z. and D.A. All authors reviewed the manuscript.
Corresponding author
Ethics declarations
Competing interests
The authors declare no competing interests.
Additional information
Editor’s Note: This article has been peer-reviewed.
Supplementary information
Supplementary Information
Supplementary Figures 1–3, Supplementary Tables 1–2, and Supplementary Notes 1–4
Rights and permissions
About this article
Cite this article
Zhang, J., Bajari, R., Andric, D. et al. The International Cancer Genome Consortium Data Portal. Nat Biotechnol 37, 367–369 (2019). https://doi.org/10.1038/s41587-019-0055-9
Published:
Issue Date:
DOI: https://doi.org/10.1038/s41587-019-0055-9
This article is cited by
-
TMO-Net: an explainable pretrained multi-omics model for multi-task learning in oncology
Genome Biology (2024)
-
Identification of fatty acids synthesis and metabolism-related gene signature and prediction of prognostic model in hepatocellular carcinoma
Cancer Cell International (2024)
-
TP63–TRIM29 axis regulates enhancer methylation and chromosomal instability in prostate cancer
Epigenetics & Chromatin (2024)
-
The Ihara zeta function as a partition function for network structure characterisation
Scientific Reports (2024)
-
Paradigm shift required for translational research on the brain
Experimental & Molecular Medicine (2024)