The formation of non-covalent directional interactions, such as hydrogen or halogen bonds, is a central concept of materials design, which hinges on using small compact atoms of the 2nd period, notably nitrogen and oxygen, as acceptors. Heavier atoms are much less prominent in that context, and mostly limited to sulfur. Here, we report the experimental observation and theoretical study of halogen bonds to phosphorus, arsenic and antimony in the solid state. Combining 1,3,5-trifluoro-2,4,6-triiodobenzene with triphenylphosphine, -arsine, and -stibine provides cocrystals based on I···P, I···As and I···Sb halogen bonds. The demonstration that increasingly metallic pnictogens form halogen bonds sufficiently strong to enable cocrystal formation is an advance in supramolecular chemistry which opens up opportunities in materials science, as shown by colossal thermal expansion of the cocrystal involving I···Sb halogen bonds.
Halogen bonding (XB), an attractive interaction between an electrophilic region on a halogen atom and a nucleophile1, has emerged as one of the most important directional intermolecular forces, relevant for the design of functional solids, separations, pharmaceuticals, biomolecular recognition and more2,3,4,5,6. Compared to hydrogen bonding, XB is expected to provide access to molecular assembly motifs involving heavy atoms with increasingly diffuse electron orbitals, that would engage in hydrogen bonding only with difficulty or not at all7. This is shown in reports of XB cocrystals involving later members of group 16, e.g., S, Se, and, most recently, Te8,9,10,11,12. In contrast, until recently13 there have been no reports of analogous cocrystals of group 15 elements (the pnictogens) except nitrogen14,15,16, and documented examples of XB interactions to heavier pnictogens appear limited to gas-phase studies.
Here, we report XB cocrystals involving neutral phosphorus, arsenic and antimony acceptors, consisting of 1,3,5-trifluoro-2,4,6-triiodobenzene (tftib)17,18,19,20 as the donor and triphenylphosphine (PPh3), -arsine (AsPh3), or -stibine (SbPh3) as acceptors (Fig. 1a). The cocrystals can be made from solution or in the solid state and can be recrystallized without forming halonium salts.
Synthesis and structures of cocrystals
The cocrystal (tftib)(PPh3) was obtained as a part of our program in exploring XB to unusual acceptors21. Slow evaporation of an equimolar solution of tftib and PPh3 in acetonitrile gave colorless crystals that were characterized by single crystal X-ray diffraction at 103 K. Structure determination revealed that asymmetric unit consists of one molecule each of tftib and PPh3 (Fig. 1b). One iodine atom in each tftib unit is engaged in a short I···P contact to a PPh3 molecule, with the interatomic distance dXB,exp of 3.3133(5) Å and ∠C−I···P angle of 165.33(4)° (Table 1, full crystallographic data is provided in Supplementary Table 1). The I···P separation is 12.3% shorter (RXB = 0.877)22 than the sum of van der Waals radii of phosphorus and iodine23, consistent with XB. It is also significantly longer than the covalent P–I bond formed by reaction of PPh3 and I2 (2.48 Å, which corresponds well to 2.46(4) Å, the sum of covalent radii for P and I, 1.07(3) and 1.39(3) Å24, respectively)25. The remaining iodine atoms on each tftib molecule form a short I···F contact of 3.1011(10) Å with a neighboring tftib molecule, and an I···π contact with another neighboring PPh3 unit, with I···C distances of 3.3456(16), 3.5642(16), and 3.6592(18) Å (Fig. 2, Supplementary Fig. 1). The PPh3 molecules in the crystal structure of (tftib)(PPh3) are arranged in pairs situated around a center of inversion, forming the phenyl embrace motif (Supplementary Fig. 2) that has been extensively investigated by the Dance group26. While this work was under review, the cocrystal (tftib)(PPh3) was also observed by the Bryce group, and characterized by single crystal X-ray diffraction and solid-state nuclear magnetic resonance (NMR) spectroscopy13.
Next, we explored cocrystallization of tftib with AsPh3, SbPh3, triphenylbismuth (BiPh3) and triphenylamine (NPh3). Crystallization from acetonitrile gave colorless crystals of (tftib)(AsPh3) and (tftib)(SbPh3) which were analyzed by single crystal X-ray diffraction at 103 K. Both cocrystals were isostructural to (tftib)(PPh3) (Table 1, full crystallographic data is given in Supplementary Tables 2 and 3, also Supplementary Figs. 1, 2), exhibiting short I···As and I···Sb contacts of 3.4211(3) Å (Fig. 1c) and 3.5747(3) Å (Fig. 1d), respectively. Both contacts are highly linear and ca. 11% shorter than respective sums of van der Waals radii23, consistent with XB. Notably, the I···As separation in (tftib)(AsPh3) is significantly longer than the As-I covalent bond in the adduct AsPh3I2 (2.64 Å, which corresponds well to 2.58(5) Å, the sum of covalent radii for As and I, 1.19(4) and 1.39(3) Å24, respectively)25,27.
The cocrystals (tftib)(PPh3), (tftib)(AsPh3), and (tftib)(SbPh3) were also accessible mechanochemically28, by ball milling neat or by liquid-assisted grinding (LAG) in the presence of a small amount of ethanol (liquid−to−solid ratio, η = 0.2 μL mg−1)29. Milling equimolar amounts of tftib and the XB acceptor gave solid materials whose powder X-ray diffraction (PXRD) patterns matched the simulated ones for (tftib)(PPh3), (tftib)(AsPh3), and (tftib)(SbPh3) (Fig. 3a, also Supplementary Figs. 3-5). All attempts to synthesize cocrystals (tftib)(BiPh3) and (tftib)(NPh3) mechanochemically, or from solution, have been unsuccessful (see Supplementary Figs. 6, 7).
The cocrystals and reaction mixtures were also analyzed by Fourier-transform infrared attenuated total reflectance (FTIR-ATR, see Supplementary Fig. 8) and Raman spectroscopy. In particular, mechanochemical cocrystallization was also followed in situ by Raman spectroscopy, especially by monitoring the low intensity bands of solid reactants and cocrystals between 1100 and 1500 cm−1. Such experiments, which required the use of sapphire milling jars that are considerably more transparent in that spectral region compared to more conventional PMMA ones30, revealed that the cocrystals form rapidly, in less than 10 min by neat milling (Fig. 3b, c, d, for full spectra see Supplementary Figs. 9-11). The reactions by LAG were even faster, and the synthesis of (tftib)(PPh3) was accomplished in less than 2 min in the presence of a small amount of ethanol (η = 0.2 μL mg−1) (see Supplementary Figs. 12, 13).
The formation of halogen-bonded cocrystals between tftib donor and PPh3, AsPh3, or SbPh3 contrasts the documented behavior of organophosphines and -arsines towards strong XB donor halogens and interhalogens, which usually results in covalent bonding between pnictogens and halogens25,27. Importantly, whereas the resulting compounds readily dissociate into halonium salts in solution, the herein prepared cocrystals can be readily recrystallized from different solvents, demonstrating reversible XB assembly.
Theoretical calculations and modeling
To further evaluate the I···P, I···As, and I···Sb halogen bonds, as well as to explain the inability to synthesize cocrystals of BiPh3 and NPh3, we conducted a theoretical density functional theory (DFT) study of putative gas-phase complexes (tftib)(PPh3), (tftib)(AsPh3), (tftib)(SbPh3), (tftib)(BiPh3), and (tftib)(NPh3), as well as of the crystal structures of (tftib)(PPh3), (tftib)(AsPh3), (tftib)(SbPh3) and the hypothetical crystal structure of (tftib)(BiPh3) using periodic DFT. The geometries of optimized solid-state and gas-phase structures are provided in Supplementary Data 1–14 (see Supplementary Notes 1 and 2).
Computational modeling of halogen bonding interactions is an active area of research, with particular effort directed towards understanding the nature of halogen bonding through various energy decomposition schemes31,32. Benchmarks of DFT functionals against higher level Coupled-Cluster with Single and Double and Perturbative Triple excitations (CCSD(T)) and second order Møller-Plesset perturbation theory (MP2) calculations have shown that range-separated functionals perform well for modeling halogen bonds to delocalized π-systems33. Similarly, long-range corrected functionals have shown superior performance to typical oxygen- and nitrogen-based acceptors34,35,36. Here, we used the range-separated ωB97X functional35 which is expected to yield a more accurate description of XB contacts and crystal structure as a whole36. We have also decided not to use semi-empirical dispersion corrections (SEDCs), as there is no consensus whether they offer an improved treatment of halogen bonds32,36.
Periodic and gas-phase geometry optimizations were performed using CRYSTAL1737 with all-electron basis sets for H, C, F, N, P, and As38. Effective core potentials (ECPs)39 were used to account for relativistic effects in heavy atoms (Sb, I40, Bi41). Cocrystal formation energies (ΔEf,calc, Table 2 and Supplementary Table 4) were calculated from lattice energies of optimized crystal structures, including the unit cell dimensions, of the three synthesized cocrystals, the putative cocrystal (tftib)(BiPh3), and structures of reactants found in the Cambridge Structural Database (CSD, v. 5.39, Feb 2018)42. Supplementary Data 1–9 contain all DFT-optimized solid-state structures in CIF format (see Supplementary Note 1). Energies of isolated XB dimers were computed for molecular geometries found in cocrystals, and for optimized gas-phase geometries (see Supplementary Tables 5-7). Supplementary Data 10–14 contain geometries for all optimized gas-phase dimers in XYZ format (see Supplementary Note 2). In order to rationalize the varying halogen-bonding abilities of the pnictogen atoms, electrostatic potential surfaces (ESPs, Fig. 4a, Table 2) were computed for isolated molecules in Gaussian 1643,44.
In order to assess the suitability of our chosen DFT functional, we have compared the geometries of DFT-optimized and experimental cocrystal structures. The differences between calculated and measured halogen bond lengths all fall within 0.1 Å (see Supplementary Table 8), which is highly satisfactory and accounts for less than 3% relative error. The errors in calculated halogen bond angles (∠C−I···E) are also highly satisfactory and fall within 6o, or 4% of their experimental values (see Supplementary Table 8). These results are all in line with the general accuracy of non-covalent interactions achievable with periodic DFT methods45. Whereas a benchmark theory vs. experiment study for the accuracy of halogen bond geometries calculated using periodic DFT has not yet been reported, we note that the herein match of theory and experiment is significantly improved compared to a recent comparison of halogen bond geometries calculated in the gas phase and measured in a crystal structure46. The accuracy of our modeling approach was also verified by comparing the experimentally measured (at 103 K) and DFT-optimized unit cell parameters (see Supplementary Table 9)47,48.
Calculated halogen bond dimer energies (EXB,calc) in the crystal and in the gas phase follow the trend PPh3 > AsPh3 > SbPh3 > NPh3 (calculated in gas phase only) > BiPh3. This trend is explained by a combination of at least three factors. The first one, pertinent to P, As, Sb, and Bi, is an expected drop in the ESP of the pyramidally-bonded pnictogen atom due to decreasing electronegativity, in the order PPh3 > AsPh3 > SbPh3 > BiPh3. The two other factors explain the low energy of halogen-bonded complex formation with NPh3: the very low ESP on the nitrogen atom due to delocalization of the lone electron pair with the phenyl substituents49, and the significantly higher steric bulk that is evident on the nitrogen atom due to the planar arrangement of the three C–N bonds (Fig. 4). The role of steric bulk is particularly notable, considering that sterically less hindered dimethylaniline derivatives are known to form halogen-bonded cocrystals50. Importantly, for PPh3, AsPh3, and SbPh3, the ESP on the pnictogen is more negative than on the phenyl ring π-system, while the opposite is true for NPh3 and BiPh3, which did not form cocrystals (Table 2). An additional consideration for halogen-bonded complex with BiPh3 concerns the effect of spin-orbit coupling (SOC) interactions on halogen bond energy. Previous computational studies51,52 have shown that SOC may have a pronounced effect on the energies of halogen bonds to heavy atoms. Our calculation using ADF201853,54, however, has shown that SOC accounts for only a 0.1 kJ mol−1 change in (tftib)(BiPh3) dimer interaction energy, compared to non-relativistic DFT calculation (Supplementary Table 6).
The EXB,calc for (tftib)(PPh3) in the gas phase is similar to that previously calculated55 for gas-phase XB complex of P(CH3)3 and CF3I (5.76 kcal mol−1, 24.10 kJ mol−1). However, the EXB,calc for gas-phase (tftib)(NPh3) is lower than previously calculated for the CF3I···N(CH3)3 complex (5.64 kcal mol−1, 23.56 kJ mol−1), which can again be explained by planar geometry and delocalization in NPh3 in contrast to pyramidal trimethylamine that was used in the previous theoretical study. Specifically, the geometry around the nitrogen atom in the hypothetical gas-phase complex (tftib)(NPh3) remains strongly planar, with the nitrogen atom calculated to be only 0.19 Å out of the plane of the three directly connected carbon atoms. For comparison, the corresponding calculated out-of-plane distances for gas-phase complexes involving the pyramidal molecules PPh3, AsPh3, SbPh3, and BiPh3 are respectively 0.80, 0.91, 1.09, and 1.19 Å (see Supplementary Data 10–14 for geometries of all optimized gas-phase dimers in XYZ format, Supplementary Note 2).
Periodic DFT calculations were used to evaluate the relative stabilities of synthesized (tftib)(PPh3), (tftib)(AsPh3), and (tftib)(SbPh3) cocrystals. The calculations were verified by comparing the XB lengths (dXB,calc) in optimized crystal structures to measured ones. As the molecular geometry of BiPh3 strongly resembles that of AsPh3 and SbPh3, we also evaluated the structure of a putative cocrystal (tftib)(BiPh3), which was generated by replacing the Sb atom in the crystal structure of (tftib)(SbPh3) with Bi and optimizing. For NPh3, which exhibits a planar geometry notably different from that of its congeners, this was not possible without attempting a full-scale crystal structure prediction study, which would be outside of the scope of this work. Consequently, we did not investigate any putative structures for a (tftib)(NPh3) cocrystal. Supplementary Data 1–9 contain all DFT-optimized solid-state structures in CIF format (see Supplementary Note 1).
Gratifyingly, the calculated formation energies (ΔEf,calc) were found to be negative for all of the observed cocrystals, indicating thermodynamic stability with respect to solid reactants. At the same time, the ΔEf,calc was slightly positive for the so far inaccessible (tftib)(BiPh3), indicating that the formation of that cocrystal would not be likely (Table 2). Notably, the ΔEf,calc is most negative for (tftib)(PPh3) and becomes less negative going down group 15, in agreement with the trend in calculated halogen bond energies and ESPs. Consequently, theoretical calculations conducted so far are consistent with the results of experimental cocrystal screening. As BiPh3 is of similar molecular shape and dimensions to PPh3, AsPh3, and SbPh3, such agreement between experimental and theoretical results indicates that the I···P, I···As, and I···Sb halogen bonds are an important contributor to enabling the formation of herein observed cocrystals.
Stability and thermal properties of cocrystals
Isostructurality of (tftib)(PPh3), (tftib)(AsPh3), and (tftib)(SbPh3) provides an opportunity to compare how switching between I···P, I···As, and I···Sb halogen bonds may affect solid-state properties of materials. For that purpose, we have explored the thermal behavior of the three cocrystals (see Supplementary Figs. 14-26) and investigated their structures at different temperatures (Tables 3, 4, also Supplementary Tables 1-3). Differential scanning calorimetry (DSC) reveals the melting points (Tm) of (tftib)(PPh3), (tftib)(AsPh3), (tftib)(SbPh3) as 106, 92, and 77 °C, with associated enthalpies of fusion (ΔHfus) of 31.3, 29.8, and 21.2 kJ mol−1. The relative order of Tm and ΔHfus suggests the ordering of XB strengths I···P > I···As > I···Sb, similar to the calculated one: I···P > I···As ≈ I···Sb.
In order to obtain further insight into the behavior of I···P, I···As, and I···Sb halogen bonds in the solid state, and explore their potential effect on cocrystal properties, we conducted the crystallographic characterization at 103, 153, 203, and 253 K (Table 4, also Supplementary Tables 1-3). The analysis of the crystal structures collected at different temperatures reveals a significant effect of switching between PPh3, AsPh3, and SbPh3 on thermal expansion properties of the cocrystals.
Linear expansion coefficients along the principal axes calculated through PASCal56, using the cocrystal unit cell parameters revealed a colossal positive thermal expansion57,58 of 121(4) MK−1 along one of the axes for (tftib)(SbPh3) (Fig. 5a).
For (tftib)(AsPh3) and (tftib)(PPh3), respective maximal linear expansions coefficients are 89(3) and 83.5(19) MK−1 (see Supplementary Figs. 27, 28). Structural analysis at different temperatures also shows that I···P, I···As and I···Sb distances change in a roughly linear fashion, with thermal expansion coefficients of 3.6(2)·102, 4.5(2)·102, and 3.9(3)·102 Å MK−1, respectively (Fig. 5b). While these do not directly reflect XB strength59, they are larger than those reported for I···N (2.8·102 Å MK−1) and Br···N (3·102 Å MK−1) interactions, which is consistent with halogen bonds to P, As and Sb being weaker.
The present study reports the observation of halogen bonds involving heavy pnictogens as acceptors in the solid state. The herein presented cocrystal structures, combined with gas-phase and solid-state theoretical calculations, show that P, As, and Sb can act as respectable XB acceptors in the solid state, forming contacts that are 11–12% shorter than the sums of van der Waals radii, with calculated dissociation energies between 12–17 kJ mol−1. Importantly, the described cocrystals can be readily obtained and even re-crystallized from organic solvents, without forming halonium salts. We speculate that the use of an organic halogen bond donor 1,3,5-trifluoro-2,4,6-triiodobenzene, is key to the formation of stable cocrystals, contrasting the covalent bonds and halonium salts that are traditionally observed with strong inorganic donors like halogens and interhalogens. Consequently, it is likely that further development of halogen-bonded supramolecular chemistry of heavy pnictogens will require careful design and manipulation of halogen bond donor strength. While demonstrating yet unexplored supramolecular chemistry of metalloids As and Sb, which has so far been limited to acting as donor atoms in coordination complexes60, this work also creates opportunities for the design of molecular solids through directional, non-covalent interactions involving heavy, increasingly metallic acceptor atoms.
All solvents used for syntheses and crystal growth were of reagent grade and were used as received. Triphenylamine (NPh3), triphenylphosphine (PPh3), triphenylarsine (AsPh3), triphenylstibine (SbPh3), and triphenylbismuth (BiPh3) were purchased from Sigma-Aldrich, while 1,3,5-trifluoro-2,4,6-triiodobenzene (tftib) was purchased from Ark Pharm.
Mechanochemical experiments were conducted on a Retsch MM200 mill operating at 25 Hz frequency using a 14 mL polytetrafluoroethylene (PTFE) jar along with a zirconia ball (9.5 mm diameter and ~3 g weight).
Single crystal X-ray diffraction
Single crystal X-ray diffraction data for (tftib)(PPh3), (tftib)(AsPh3), and (tftib)(SbPh3) were collected at 103, 153, 203, and 253 K on a Bruker D8 Venture dual-source diffractometer equipped with a PHOTON 100 detector and an Oxford Cryostream 800 cooling system, using mirror-monochromatized MoKα radiation (λ = 0.71073 Å) from a microfocus source. Data were collected in a series of φ- and ω-scans. APEX3 software was used for data collection, integration and reduction61. Numerical absorption corrections were applied using SADABS-2016/262. The structures were solved by dual-space iterative methods using SHELXT63 and refined by full-matrix least-squares on F2 using all data with SHELXL64 within the OLEX265 and/or WinGX66 environment. In all cases, some reflections were found to have been obscured by the beam stop and were omitted from the refinement. Extinction correction was applied in all cases. Hydrogen atoms were placed in calculated positions and treated as riding on the parent carbon atoms with Uiso(H) = 1.2 Ueq(C). Crystal structure figures were generated using Mercury67 and POV-Ray68. The X-ray crystallographic coordinates for structures reported in this study have been deposited at the Cambridge Crystallographic Data Centre (CCDC), under deposition numbers 1850430-1850441. These data can be obtained free of charge from The Cambridge Crystallographic Data Centre via www.ccdc.cam.ac.uk/structures.
Powder X-ray diffraction (PXRD)
Powder X-ray diffraction experiments were performed on a Bruker D8 Advance diffractometer with CuKα (λ = 1.54184 Å) radiation source operating at 40 mA and 40 kV, equipped with a Lynxeye XE linear position sensitive detector, or a Bruker D2 Phaser diffractometer with CuKα (λ = 1.54184 Å) radiation source operating at 10 mA and 30 kV, equipped with a Lynxeye linear position sensitive detector, in the 2θ range of 4/5−40°.
Differential scanning calorimetry (DSC) measurements were performed on a Mettler-Toledo DSC823e module in sealed aluminum pans (40 μL) with three pinholes in the lid, heated in a stream of nitrogen (150 mL min−1) at a heating rate of 10 °C min−1. Thermogravimetric analysis (TGA) measurements were performed on a Mettler-Toledo TGA/SDTA 851e module in sealed aluminum pans (40 μL) with three pinholes in the lid, heated in a stream of nitrogen (150 mL min−1) at a heating rate of 10 °C min−1. Data collection and analysis were performed using the program package STARe Software 15.00.
Fourier-transform infrared attenuated total reflectance (FTIR-ATR) measurements were performed on a Bruker VERTEX 70 instrument equipped with a single-reflection diamond crystal Platinum ATR unit.
In situ Raman spectroscopy
All Raman experiments were performed using a RamanRxn1™ analyzer by Kaiser Optical Systems Inc. operating with a 785 nm laser. Spectra were dark- and intensity-corrected using the Holograms® software package before being processed in MATLAB, where spectra were smoothed using a Savitsky-Golay filter, background-corrected with the Sonneveld-Visser algorithm69, and normalized via standard normal variate. In situ Raman monitoring experiments were performed with the same loadings as described in the preparation of cocrystals. Reactions were performed using a Retsch MM400 mill operating at 25 Hz equipped with a custom designed sapphire jar with a volume of 8.5 mL and loaded with one 2 grams zirconia ball. All measurements were run for 30 min with a spectrum acquisition every 5 s.
Cocrystal synthesis and single crystal growth
The cocrystal (tftib)(PPh3) was prepared by milling a mixture of tftib (132.1 mg, 0.259 mmol) and PPh3 (67.9 mg, 0.259 mmol), either neat or along with 40.0 µL of ethanol for 20 min. Single crystals were obtained by dissolving a mixture of tftib (58.3 mg, 0.114 mmol) and PPh3 (30.0 mg, 0.114 mmol) in 1 mL of acetonitrile and leaving the solution to cool and evaporate at room temperature for 1 day.
The cocrystal (tftib)(AsPh3) was prepared by milling a mixture of tftib (124.9 mg, 0.245 mmol) and AsPh3 (75.1 mg, 0.245 mmol), either neat or along with 40.0 µL of ethanol for 20 min. Single crystals were obtained by dissolving a mixture of tftib (49.9 mg, 0.098 mmol) and AsPh3 (30.0 mg, 0.098 mmol) in 1 mL of acetonitrile and leaving the solution to cool and evaporate at room temperature for 1 day.
The cocrystal (tftib)(SbPh3) was prepared by milling a mixture of tftib (118.2 mg, 0.232 mmol) and SbPh3 (81.8 mg, 0.232 mmol), either neat or along with 40.0 µL of ethanol for 20 min. Single crystals were obtained by dissolving a mixture of tftib (43.3 mg, 0.085 mmol) and SbPh3 (30.0 mg, 0.085 mmol) in 1 mL of acetonitrile and leaving the solution to cool and evaporate at room temperature for 1 day.
DFT calculations (both periodic and molecular) were performed using the program CRYSTAL1737. The calculations utilized range-separated hybrid ωB97X functional, and electronic wavefunctions were modeled with a POB-TZVP basis set38,39,40, specifically modified from a standard TZVP basis set for use in periodic calculations. The basis sets for heavy elements (Sb, I) were supplemented by effective core potentials (ECPs), screening 28 core electrons (n = 1, 2, and 3 shells). In the case of Bi atom, a different basis set with 60-electron ECP was used41, since the POB-TZVP basis set had not been parameterized for the elements in Period 6.
Periodic DFT geometry optimizations were performed for the experimentally determined cocrystal structures of (tftib)(EPh3) (E = P, As, Sb), putative (tftib)(BiPh3) structure, as well as the starting materials. For the starting materials, the crystal structures were obtained from CSD: tftib (UCEPEY), PPh3 (PTRPHE02), AsPh3 (ZZZEIG01), SbPh3 (ZZEHA01), and BiPh3 (BITRPH02). Geometry optimization of all crystal structures involved relaxation of atom coordinates and unit cell parameters, subject to the constraints of the corresponding space groups. The following convergence criteria were used: maximum force 4.5 · 10−4 Ha Bohr−1, RMS force 3.0 · 10−4 Ha Bohr−1, maximum atom displacement 1.8 · 10−3 Bohr, RMS atom displacement 1.2 · 10−3 Bohr. The energies of all crystal structures were corrected for basis set superposition error (BSSE) using counterpoise method with ghost atoms located up to 5 Å away from the reference molecule. The final electronic energies for the optimized crystal structures, as well as calculated cocrystal formation energies are shown in the Supplementary Table 4. Supplementary Data 1–9 contain coordinates for all DFT-optimized solid-state structures in CIF format (see Supplementary Note 1).
We have validated the choice of range-separated ωB97X functional by comparing geometries of DFT-optimized and experimental cocrystal structures. The calculated halogen bond lengths all fall within 0.1 Å of their experimental values, which accounts for less than 3% relative error (Supplementary Table 8). The deviation of calculated halogen bond angles, ∠C−I···E, is always below 6°, i.e., below 4% from their experimental values. Periodic DFT calculations provide superior accuracy, and our calculated halogen bond parameters are in line with the general accuracy of non-covalent interactions achievable with periodic DFT methods45. In contrast, gas-phase simulations of halogen-bonded complexes neglect the effects of crystal packing, resulting in up to 0.2 Å deviations from experimental solid-state halogen bond lengths46.
The overall accuracy of periodic DFT structure optimizations can be evaluated by comparing the optimized unit cell parameters with their experimental values (Supplementary Table 9). The optimized unit cell lengths are all 2-5% shorter than their experimental values. This shortening of the unit cell axes results in 7–8% lower calculated unit cell volumes for all three cocrystals. The differences in unit cell volumes can be partially attributed to the temperature effects, since DFT calculations correspond to 0 K temperature, while experimental unit cell parameters were measured at 103 K. In terms of unit cell angles, the deviation from experimental values is in the 0.5–4.8° range (0.5–6.8% relative error). The overall agreement of unit cell parameters is within the limits of expected accuracy of periodic DFT calculations for organic molecular crystals, which are held together only by non-covalent interactions47,48. Our results confirm that ωB97X range-separated functional provides an adequate description of supramolecular interactions present in the cocrystal structures.
Molecular calculations were performed for the halogen-bonded dimers extracted from the optimized cocrystal structures. Two sets of dimerization energies were calculated, one for the dimer with the geometry found in crystal lattice, another for the dimer optimized in the gas-phase geometry. Dimer dissociation energies were BSSE-corrected using counterpoise method and are summarized in Supplementary Tables 5 and 6. Supplementary Data 10–14 contain geometries for all optimized gas-phase dimers in XYZ format (see Supplementary Note 2).
Electron density distributions of individual molecules were calculated using Gaussian 16 program, and the ESP surfaces were plotted with GaussView 643,44. The calculations utilized ωB97X functional and Def2-TZVP molecular basis set combined with 28-electron (for Sb and I) and 60-electron (for Bi) ECPs. The ESP maps were plotted on a 0.002 a.u. total electron density isosurfaces.
Spin-orbit coupling (SOC) calculation was performed for the halogen-bonded dimer (BiPh3)(tftib) in the geometry extracted from the optimized crystal structure. The calculation was performed using the program ADF version 2018.10153,54, employing the ωB97X functional with double-zeta (DZP) all-electron basis set70. Relativistic effects were simulated with a spin-orbit zeroth order regular approximation (ZORA) method71. In addition, a standard DFT calculation, uncorrected for relativistic effects, was also performed to assess the contribution of SOC to the halogen bond interaction energy.
All relevant data, including powder X-ray diffraction (PXRD), Fourier-transform infrared attenuated total reflectance (FTIR-ATR) and Raman spectroscopy, as well as differential scanning calorimetry and thermogravimetric data that support the findings of this study are available on request from the authors. The X-ray crystallographic coordinates for structures reported in this study have been deposited at the Cambridge Crystallographic Data Centre (CCDC), under deposition numbers 1850430-1850441. These data can be obtained free of charge from The Cambridge Crystallographic Data Centre via www.ccdc.cam.ac.uk/data_request/cif. The authors declare that all other data supporting the findings of this study are available within the paper and its supplementary information files.
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We thank the Croatian Science Foundation (IP-2014-09-7367), NSERC Discovery Grant (RGPIN-2017-06467) and E. W. R. Steacie Memorial Fellowship (SMFSU 507347-17). A.J.M. thanks the University of Birmingham for research funding through the Birmingham Fellowship scheme. F.T. thanks the Banting Postdoctoral Fellowship from the Government of Canada. The research was enabled in part by support of Calcul Québec (http://www.calculquebec.ca) and Compute Canada (www.computecanada.ca). McGill University is acknowledged for the Gaussian 16 licence. We also thank SHARCNET (https://www.sharcnet.ca) for the ADF software licence and access to the Graham supercomputer.
The authors declare no competing interests.
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Lisac, K., Topić, F., Arhangelskis, M. et al. Halogen-bonded cocrystallization with phosphorus, arsenic and antimony acceptors. Nat Commun 10, 61 (2019). https://doi.org/10.1038/s41467-018-07957-6
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