Muscular dystrophies are characterized by weakness and wasting of skeletal muscle tissues. Several drugs targeting the myostatin pathway have been used in clinical trials to increase muscle mass and function but most showed limited efficacy. Here we show that the expression of components of the myostatin signaling pathway is downregulated in muscle wasting or atrophying diseases, with a decrease of myostatin and activin receptor, and an increase of the myostatin antagonist, follistatin. We also provide in vivo evidence in the congenital myotubular myopathy mouse model (knock-out for the myotubularin coding gene Mtm1) that a down-regulated myostatin pathway can be reactivated by correcting the underlying gene defect. Our data may explain the poor clinical efficacy of anti-myostatin approaches in several of the clinical studies and the apparent contradictory results in mice regarding the efficacy of anti-myostatin approaches and may inform patient selection and stratification for future trials.
Skeletal muscle mass is controlled by different pathways among them myostatin, which is a member of the transforming growth factor-beta (TGF-beta) family of proteins whose function appears to be conserved across species1. Because several spontaneous mutations in the myostatin gene have been correlated with muscle hypertrophy in animals (for review see ref. 2) or even in human3, myostatin inhibition had been seen as a promising tool to fight muscle atrophy in different diseases including muscle diseases.
Myostatin is a secreted protein, synthetized by skeletal muscle as a precursor which undergoes maturation steps4, 5. Several myostatin inhibitory drugs have been designed targeting different stages of the myostatin biosynthesis or pathway among them (i) monoclonal antibodies targeting myostatin, (ii) monoclonal antibodies targeting myostatin’s receptor AcvRII, (iii) AcvRII decoys, (iv) follistatin overexpression which functions as a myostatin antagonist by preventing receptor binding (for review see ref. 6). During the last 15 years, at least six molecules (MYO-029, BMS-986089, PF-06252616, ACE-083/-031, BYM338, FS-344) have been developed by pharmaceutical companies to block myostatin pathways (https://clinicaltrials.gov). These molecules are/were evaluated in several neuromuscular diseases that show muscular wasting or atrophy but so far the published results were largely disappointing. Significant improvements in muscle strength or physical function have not been reached7,8,9 with the exception of two small open-label studies using an AAV vector encoding the follistatin isoform FS344 intramuscularly injected in Becker Muscular Dystrophy (BMD, n = 6) patients and in Inclusion Body Myositis (IBM, n = 6)10,11,12 and 1 small randomised controlled trial using a monoclonal antibody against the AcvRII receptor in IBM patients (n = 11 active, 3 placebo)13. Several explanations have been proposed, among them the specificity of the drugs themselves and the possibility that they do not target the correct form of myostatin or target other growth factors besides myostatin implicated in muscle mass regulation. However, in animals, several laboratories including ours have demonstrated that myostatin pathway inhibition leads to muscle hypertrophy and enhances tetanic force in controls or in several murine models of muscle diseases such as the mdx mouse, a murine model for Duchenne Muscular Dystrophy (DMD)14, 15.
We hypothesized that another possible explanation for the poor clinical efficacy of anti-myostatin molecules in several of the human studies was that the expression level of the targeted protein itself was reduced. Indeed, one can easily imagine that a treatment targeting circulating myostatin may not work if the level of circulating myostatin is already very low in patients. So far, only a few articles have described the expression levels of circulating myostatin in patients16,17,18. In our study, the expression levels of different actors of the myostatin network were analyzed at messenger RNA (mRNA) and/or protein levels in the sera and/or biopsies of patients with different muscular diseases and in a mouse model of congenital myotubular myopathy. Our data show that in several neuromuscular diseases the myostatin pathway is shut down at mRNA level in muscle biopsies, leading to low levels of circulating and endogenous muscle myostatin and high-levels of follistatin. The regulation of the myostatin network is disease-dependent, the patients affected by the most atrophying disease showing the strongest extinction of the myostatin pathway. Further inhibition of this pathway by an exogenous compound (monoclonal antibody or vector-mediated inhibition) in the presence of strong down-regulation in severely affected muscles may not be an efficient strategy to increase muscle mass, even though this blockage is reversible upon proper treatment of the primary cause of the disease, as exemplified by the myotubular myopathy model. These data may explain the poor clinical efficacy of most anti-myostatin approaches for neuromuscular diseases to date and may affect patient selection and stratification for future trials.
Concentration of serum myostatin in neuromuscular diseases
Serum concentrations of myostatin (MSTN or GDF8), follistatin (FSTN), GDF11 and ACTIVIN A were determined in patients affected by several neuromuscular diseases with various levels of muscle atrophy and in controls (summarized in Table 1 and Supplementary Table 1). BMD and DMD share similar clinical signs and symptoms including muscle weakness and atrophy but in BMD, symptoms are milder and patients have a later onset19. Both DMD and BMD are caused by different mutations in the DMD gene but mutations in DMD patients lead to an absence of any functional dystrophin protein whereas mutations in BMD patients lead to a less functional protein. Spinal Muscular Atrophy (SMA) is characterized by a loss of motor neurons leading to muscle wasting often leading to premature death20. Inclusion-Body Myositis (IBM) is the most common age-related muscle disease in the elderly and characterized by a slowly progressive inflammatory and degenerative myopathy resulting in chronic muscle weakness and atrophy21. Facioscapulohumeral Dystrophy (FSHD) is the most common muscular dystrophy in adults characterized by the selective atrophy of groups of muscles22. Finally, Myasthenia Gravis (MG) is the most common primary disorder of neuromuscular transmission, caused by antibodies to the acetylcholine receptor leading to muscle weakness usually without severe muscle atrophy23. For ACTIVIN A, a trend to a lower expression in SMA and DMD patients (p = 0.06 for both, one-way ANOVA test, followed by the Fisher’s Least Significant Difference multiple comparison test) was noted (Fig. 1a). No modification of GDF11 was noted, except in SMA sera in which a massive overexpression was observed (Fig. 1b). Concerning GDF8, in the most atrophic (SMA) and most wasting (DMD) muscle diseases studied a two-fold or higher decrease of circulating GDF8 was observed (SMA 30.6% ± 13.7 and DMD 50.6% ± 17.18 GDF8 compared with controls, respectively) (Fig. 1c). Associated with this GDF8 decrease, an important trend to an increase of circulating FSTN was observed (SMA 135.6% ± 71.3 and DMD 189.4% ± 35.2 compared with controls, respectively) (Fig. 1d). BMD, IBM, and FSHD patients, who clinically show a less pronounced muscle atrophy, have higher circulating myostatin than DMD and SMA patients but less than controls (BMD 71% ± 23.7, IBM 71% ± 55.6 and FSHD 66% ± 35 compared to controls, respectively). The levels of circulating FSTN were not increased in BMD patients (85.5% ± 22.4) whereas a trend to an increase was observed in both IBM and FSHD patients (146.3 ± 70.9 and 145.8 ± 72.8). In MG patients, who do not show any atrophy, no modification of GDF8 nor FSTN was observed. Importantly, regarding all these effectors of the myostatin pathway, an important variation across samples is observed in IBM and FSHD patients, suggesting that the myostatin pathway may be significantly down-regulated in some patients whereas there is still preserved myostatin expression in others. A correlation test was performed between GDF8 and FSTN levels, but no correlation was found.
Expression of genes implicated in the myostatin pathway
As GDF8 is mainly produced by skeletal muscle, the mRNA expression levels of several genes implicated in the myostatin pathway were investigated in muscle biopsies (summarized in Table 2). Unfortunately, SMA skeletal muscle could not be studied as the diagnosis is essentially genetic and a muscle biopsy is not normally performed in SMA patients. No modification of the expression of either ACTIVIN A (Fig. 2a) or GDF11 (Fig. 2b) was observed even if a trend to an overexpression of GDF11 was noted. A massive down-regulation of GDF8 was observed in both the DMD and IBM patients as only 8 and 12% of the respective mRNA levels were detectable (Fig. 2c). At the same time, FSTN was up-regulated by 2.7 fold in IBM patients (p = 0.039) (Fig. 2d). Interestingly, the myostatin receptor ACVRIIB was strongly down-regulated in both DMD (30% of residual mRNA, p = 0.014) and IBM (40% of residual mRNA, p = 0.07) but up-regulated in FSHD (+28%, p = 0.006) (Fig. 2e). In Limb-Girdle Muscular Dystrophy (LGMD) and BMD, no significant modification of muscle GDF8, FSTN, or ACVRIIB was observed. An important variability across LGMD and BMD samples was observed but the most atrophying disease (DMD) showed again a general down-regulation of the myostatin pathway. No correlation was found between GDF8, ACVRIIB, and FSTN in all individual diseases. However, concerning FSHD patients, FSHD1 patients express less GDF8 than FSHD2 patients (p = 0.048), but no difference was observed in FSTN (Supplementary Fig. 1). FSHD2 patients showed a trend to express more ACVRIIB than FSHD1 (+120%, p = 0.08). Finally, because fat replacement is not identical in all the diseases or across patients, the expression of GDF8, FSTN, and ACVRIIB were normalized by the expression of the MLC-3 fast myosin heavy chain (encoded by the MYL1 gene which is expressed in adult in fast muscles24), and similar results were obtained (Supplementary Fig. 2).
Myostatin levels impact anti-myostatin approaches
To determine whether or not the endogenous expression level of the myostatin pathway could impact on the success of anti-myostatin approaches, we used the Mtm1-KO mouse model. We have chosen the Mmt1-KO model because X-linked myotubular myopathy (XLMTM), which is a severe congenital disease due to mutations in the myotubularin coding gene MTM1, is characterized by generalized muscle hypotrophy and weakness25 and this mouse model recapitulates the muscle atrophy. Moreover, the XLMTM muscle phenotype can be corrected by AAV-mediated gene replacement therapy in the Mtm1-KO mouse model of the disease26, 27.
Three week old myotubularin KO (Mtm1-KO) and wild type (WT) mice were intramuscularly (in the tibialis anterior (TA)) injected with an AAV coding the myostatin pro-peptide D76A mutant (AAV-PropD76A). While an increase in muscle weight was observed in the WT mice after injection (mean weight = 28.9 ± 0.6 g vs. 35.8 ± 0.9 g for phosphate buffer saline (PBS) and AAV-propD76A injected TA, respectively) p = 1.16.10e-10), no muscle growth was observed in the Mtm1-KO mice (11.7 ± 0.7 vs. 11 ± 1.8 g, respectively, p > 0.05) (Fig. 3a). Because at 3 weeks, Mtm1-KO mice already show an important loss of muscle weight of the tibialis anterior compared with WT littermates (6.5 ± 0.9 g vs. 7.8 ± 2.2 at 14 days, 8.6 ± 1.4 g vs. 16.9 ± 2.8 at 21 days and 8.9 ± 1.9 g vs. 25.8 ± 1.6 at 30 days for the Mtm1-KO and WT mice respectively, Fig. 3b), the expression level of the myostatin network was investigated. A strong down expression of Gdf8 (47.6% ± 18.6% of mRNA compared to WT mice at 14 days, 22.5% ± 7.8% at 21 days and 25% ± 6.5% at 30 days, Fig. 3c), associated with a massive up-regulation of Fstn (159% ± 44.9% of mRNA compared with WT mice at 14 days, 567% ± 201% at day 21 and 768% ± 190% at day 30, Fig. 3d) and of Gdf11 (112% ± 18% of mRNA compared with WT mice at day 14, 349% ± 38% at day 21, 178% ± 49% at day 30, Fig. 3e) were observed. AcvrIIb and Activin A expressions were only barely affected (Fig. 3f, g). These results strongly suggest a correlation between the low expression of expression of GDF8 and atrophy. This correlation was confirmed by analyzing the weight and Gdf8 expression in 2 other muscles of the Mtm1-KO mouse (Supplementary Fig. 3). In the quadriceps, which is less affected than the TA, there is loss of muscle weight of 25% ± 15% at day 21 and of 46% ± 10% at day 35. The level of Gdf8 is 71% ± 44 and 38% ± 29% at day 21 and day 35, respectively, compared with the WT animals. Finally, in the least affected muscle, the soleus, there is no muscle loss at day 21, and the myostatin level is unchanged. However, at day 35, the muscle has lost 23% ± 6% of mass and the Gdf8 level has been reduced by 21% ± 27%. These data suggest that inhibiting the myostatin pathway in an atrophic muscle might not be a successful therapeutic strategy in the Mtm1-KO mice at the time point of our analysis because the myostatin pathway is already dramatically down-regulated with 4.4-fold decrease of Gdf8 mRNA and a 5.6-fold increase of Fstn mRNA in the TA of 3 week-old Mtm1-KO mice.
The tibialis anterior muscles of WT or Mtm1-KO mice were next intramuscularly injected with either an AAV coding the Mtm1 gene (AAV-Mtm1) or a combination of the AAV-Mtm1 gene and the AAV-PropD76A. In the presence of the Mtm1 protein, muscle histology was greatly improved with an increase of cross-sectional fiber size, and an improved intracellular architecture revealed after NADH-TR staining (Supplementary Fig. 4). The abnormal localizations of the dihydropyrine 1α receptor (DHPR1α) and ryanodine receptor 1 (RYR1) were partially restored. In the Mtm1-KO mice, the muscle mass was improved in the presence of the AAV-Mtm1 (148.1% ± 12.9% of residual mRNA, p = 5.3 10e-6 compared with the Mtm1-KO injected with PBS) whereas no modification of muscle mass was observed in the WT mice (Fig. 4a). Interestingly, the presence of both AAV-Mtm1 and AAV-PropD76A allowed a further increase in muscle mass in the Mtm1-KO mice (179% ± 25.2%, p = 7.15 10e-11, compared with the TAs injected with PBS). A similar effect was observed in the WT mice (123.3% ± 6.8%, p = 8.5 10e-9 compared with the WT mice injected with PBS). In conclusion, in both Mtm1-KO and WT mice, the simultaneous injection of AAV-PropD76A + AAV-Mtm1 led to a higher increase in muscle mass than AAV-Mtm1 alone (Fig. 4a).
To determine if the myostatin pathway was restored by the expression of Mtm1 in the Mtm1-KO mice, the expression levels of Gdf8, Fstn, and AcvRIIb were analyzed in the transduced TAs. An increase of Gdf8, associated with a decrease of Fstn was observed in the presence of Mtm1 (Fig. 4b, c), without modification of AcvRIIb level (Fig. 4d). The combination of myostatin pathway inhibition and Mtm1 rescue enhanced both the Gdf8 increase and the Fstn decrease (Fig. 4b, c). These results suggest that the expression of myotubularin in the Mtm1-KO mice leading to a 2.4-fold increase of Gdf8 and a 2.8-fold decrease of Fstn was sufficient to enable an anabolic effect of the myostatin propeptide on muscle mass. The muscle atrophy observed in the Mtm1-KO mice may not be due to an up-regulation of the myostatin pathway but rather a consequence of the absence of myotubularin.
During the past 12 years at least 15 clinical trials aiming at inhibiting the myostatin pathway have been carried out to improve muscle mass and function in muscular diseases, and several of these studies are still underway (https://clinicaltrials.gov/). Different pathologies were targeted among them BMD, DMD, LGMD, IBM, and FSHD. The concept of anti-myostatin therapy for neuromuscular diseases has been based on the postulate that inhibiting this pathway in patients might lead to an increase in muscle mass and muscle strength/function as it does in normal muscle, which implies that the level of circulating myostatin is high enough to be down-regulated by such a therapeutic approach. However, the results were disappointing: (i) the injection of MYO-29, a recombinant human neutralizing antibody to myostatin, in adult muscular dystrophies (BMD, FSHD, and LGMD) did not improve any of the outcome measures (strength, lean body mass, muscle volume)8. (ii) DMD patients treated with ACE-031, a soluble form of activin type IIB receptor, showed a very slight increase in total body lean mass (+4.1% compared with +2.6% in the placebo group) and a non-statistically significant trend for maintenance of 6 min walk test was observed in the ACE-031 treated group, although the study had to be interrupted after 12–16 weeks due to safety concerns9. (iii) For sIBM patients treated with bimagrumab, a human monoclonal antibody targeting activin receptors IIA and IIB, a potential benefit in a patient reported outcome (disability scale) was shown, an increased muscle and lean body mass was observed, as well as an improvement in the 6-min walking test in a single dose phase 2 study13. However, Novartis has recently announced that, in a late-stage phase2b/3 study, bimagrumab had not met its primary endpoint (6-min walk distance) and did not improve muscle strength (quantitative muscle testing)28; (iv) Only one approach in two small phase two open-label studies showed preliminary promising results: in BMD patients, multiple intramuscular injections in three of the four muscles forming the quadriceps of an AAV vector encoding the follistatin isoform FS344 showed an improvement of the 6 min walk test at 6 months post injection10, 11. A similar therapeutic approach in IBM patients shown an improvement of the 6 min walk test by 56 m/year (distance annualized to a median 1-year change)12. Currently, several clinical trials are underway and results are expected next year.
Different possibilities could explain this absence of functional improvement, among them the drug pharmacokinetics/pharmacodynamics (PK/PD) in the conditions studied so far in humans. A retrospective analysis demonstrated that central clearance of MYO-029 in humans is greater than 2-fold than typical IgG1 mAbs and PK/PD analyses in monkeys suggested that peak and steady state exposures in the MYO-029 trial might achieve only 50 and 10% of the maximum effect seen in monkeys. This would explain why the MYO-029 had a low probability to induce a muscle mass increase in patients29. Another explanation could be the lack of specificity of the drugs themselves, GDF8 and GDF11 sharing 90% in their mature region for example. Finally, GDF8 might not be the only ligand implicated in muscle growth to bind ACVRIIB, as it was demonstrated that blocking AcvRIIb in Gdf8 deficient mice further enhances muscle mass30. Finally, ACTIVIN A has been described as more prominently regulating muscle mass in primates than does GDF831.
In our study, we have explored another confounding possibility based on the expression levels of circulating and muscle-endogenous proteins implicated in the myostatin pathway. Recently, by using an immunoaffinity (LC–MS/MS) assay, Burch et al.16 have published that serum myostatin concentrations are reduced in patients with muscle diseases. They concluded that because myostatin is mainly produced by muscle tissue, these reduced circulating myostatin levels may reflect the net loss of functional muscle mass. Our data however do not support this hypothesis. Indeed, we have observed that whole myostatin pathway is strongly altered in the most atrophying neuromuscular diseases, at both mRNA and protein levels, and that the lower expression of serum myostatin is associated with a reduced muscle expression of GDF8 mRNA. These results indicated that reduced circulating myostatin levels are not, or at least not only, the reflection of muscle loss but represent an altered myostatin regulation of the diseased tissue. In agreement with this assumption, normalization of myostatin levels against MLC3 did not alter the results, supporting the notion that net muscle loss is not the driver of myostatin reduction. In addition, the muscle atrophy observed in DMD patients is not the consequence of an activation of the myostatin pathway nor to an overexpression of ACTIVIN A. On the contrary, our data indicate that the myostatin pathway, including ACTIVIN A expression, may be intrinsically down-regulated in atrophying or wasting muscle diseases to counterbalance the wasting process. Interestingly, whereas GDF8 and GDF11 are highly homologous, no modification of GDF11 was observed in patient’s sera with the exception of SMA, suggesting that these 2 factors have different biological roles. The down-regulation of the myostatin pathway in human could explain the apparently contradictory results in mice and humans regarding the efficacies of anti-myostatin approaches. Indeed, the outcomes of a clinical trial in DMD patients was not encouraging9, while myostatin pathway blockade has been successful in mdx mice14, 15, 32. Despite the fact that Duchenne patients and mdx mice share a mutation in the same gene, no important muscle atrophy is observed before 6 months of age in the mdx mouse33, 34 and experiments are usually performed before this age. Moreover, even if myostatin levels are lower in mdx mouse than in wild-type mouse, the endogenous circulating myostatin level is at least 50 times higher in mice than in humans16. This could be one of the reasons why anti-myostatin approaches in the mdx model were successful.
Finally, one of the most important questions raised by our work concerns the usefulness of blocking the myostatin pathway in diseases in general and in neuromuscular diseases in particular. Concerning the non-muscular diseases in which the main affected organ is not the muscle (such as cancer), a deep experimental evaluation of the therapeutic potential of the anti-myostatin approaches needs to be performed. Concerning the neuromuscular diseases, in slowly progressive pathologies such as BMD or FSHD, an important variability of both myostatin and follistatin circulating proteins is observed across samples, suggesting that at least some patients may be eligible for an anti-myostatin approach. However, in the most wasting neuromuscular diseases such as DMD, the whole myostatin pathway is down-regulated. Interestingly, in the Mtm1-KO mouse model, the restoration of Mtm1 expression is associated with a normalization of the myostatin pathway, indicating by analogy that at least partial restoration of the dystrophin protein might be necessary before the inhibition of myostatin. Such an assumption is supported by the higher circulating myostatin levels in BMD compared with DMD, and experimentally by the stronger effect of anti-myostatin therapy in mdx mice if complemented by dystrophin restoration through exon skipping14, 32. Therefore, for future trials of anti-myostatin therapy patient eligibility should be tested by ascertaining sufficient levels of the therapy target and taking into account that general circulating myostatin levels may not be representative of the muscle-intrinsic levels of affected target muscles. Furthermore, in the most atrophying diseases, the mutated gene might need to be rescued first in order to restore myostatin expression before inhibiting the myostatin pathway becomes a therapeutic option.
The collection of sera and biopsies were approved by the “Comité de Protection des Personnes” Paris VI and the French regulatory agency (ANSM) (CCP#99–12, ID RCB 2012-A01277-36), the research and Development Office (#DN 12DN29), and the East Central London Research Ethics Committee 1 (reference number 10/H0721/28 and 12/LO/1557—Queen Square REC). An informed consent was obtained from all subjects. The characteristics of the patients are described in Tables 1 and 2 and Supplementary Table 1.
Mice were handled according to French and European legislation on animal care and experimentation, and protocols were approved by the institutional ethical committee. The constitutive knock-out of the myotubularin gene (Mtm1-KO, also named BS53d4-129pas) was generated previously by homologous recombination35. Wild-type littermate males were used as controls. Sample size was chosen based on previous experience in the laboratory with the mouse model and response to treatments. No pre-established inclusion/exclusion criterion was applied. Animal were not randomized for allocation in the experimental groups and animal studies were not performed under a blinding procedure. Only males were used in the experiments.
Generation of recombinant AAV vector and delivery
A recombinant serotype 1 AAV vector containing mutated myostatin propeptide D76A under the CMV promoter (AAV-PropD76A) was produced, as previously described36. Mouse Mtm1 complementary DNA (cDNA) (AF073996, NCBI) was cloned in the AAV expression pGG2-DES plasmid, which contains the human desmin promoter. Recombinant serotype 1 viral particles (AAV1-Mtm1) were obtained by a tri-transfection procedure from HEK293 cells as previously described26. Vector titers were expressed as viral genomes per ml (vg/ml).
AAV vectors were intramuscularly delivered to 3 week-old KO male mice and age matched wild type males. Mice were anesthetized by intraperitoneal injection of 5 μL/body gram of ketamine (20 mg/mL, Virbac) and xylazine (0.4%, Rompun, Bayer). TA muscles were injected with 3.5 × 109 vg of AAV-CMV- PropD76A, 5 × 109 vg of AAV-Mtm1 or sterile PBS solution. Muscles were dissected 14 days after injection and frozen in either liquid nitrogen-cooled isopentane or liquid nitrogen for histological and molecular assays.
Peripheral venous blood was collected from healthy and patients’ volunteers using serum separator tubes (10 mL). After 30 min on the benchcoat at room temperature, the tubes were centrifuged at 2000 rpm for 10 min at 4 °C. The collected serum (5 mL) was aliquoted and stored at −80 °C until further use. The concentrations of either GDF8, FOLLISTATIN, GDF11, or ACTIVIN A in the sera were measured using an ELISA kit (respectively # DGDF8, # DFN00, # DY1958, and # DAC00B R&D Systems Europe, Ltd, Abingdon, United Kingdom) according to the manufacturer’s instructions. The optical density was measured using a microplate reader (Infinite 200 Pro, Tecan Group Ltd., Männedorf, Switzerland). Importantly, the myostatin immunoassay was designed to recognize mature GDF8. According to the manufacturer, no significant cross-reactivity or interference was observed in the presence of 50 ng/ml (20 times more than the highest value measured in our experiment) of different proteins including the GDF8 propeptide, GDF11 or GDF15. We have experimentally confirmed this result by using 4000 pg/ml of recombinant GDF11. The absence of cross reactivity with FOLLISTATIN (8000 pg/ml) and ACTIVIN A (4000 pg/ml) was also experimentally validated.
RNA extraction and real-time PCR
For murine samples, total RNA was purified from muscles of males using TRIzol reagent (Life Technologies, Saint Aubin, France) according to manufacturer’s instructions. RNA concentration was measured by spectrophotometry (OD 260 nm) using a nanodrop ND-1000 spectrophotometer (Thermo Scientific, Wilmington, DE, USA) and RNA integrity was verified by electrophoresis using ethidium bromide. After DNAse treatment (Ambion), RNA was reverse transcribed using Super Script II RNase H Reverse Transcriptase (Invitrogen) in the presence of Random Primers (Promega). Real-time PCR was performed at 60 °C as melting temperature and with primers described in Supplementary Table 2 using an ABI Prism 7900 apparatus (Applied Biosystems) in a final volume of 25 µl with reverse transcriptase, forward and reverse primers (0.5 nmol/ml) and SYBRGreen Mastermix (Roche, Basel, Switzerland).
For human samples, cryopreserved tissues were transferred in tube containing 1.4 mm ceramic beads (Precellys, Bertin Corp, Maryland, United State) plus 1 mL of Trizol (Life technologies, Saint Aubin, France) and shaked three times at 5700 rpm for 30 s. Between each cycle, tubes were incubated in ice during at least 1 min. Total RNAs were extracted using trizol according to the manufacturer’s protocol (Life technologies, Saint Aubin, France). The quantity of RNA was determined using a nanodrop ND-1000 spectrophotometer (Thermo Scientific, Wilmington, DE, USA). The reverse transcription was described previously and realized on 1 µg of total RNA in a final volume of 10 µl using the transcriptor first strand cDNA synthesis kit (Roche, Meylan, France)37. qPCRs were performed on a LightCycler 480 Real-Time PCR System (Roche, Meylan, France) in a final volume of 9 µl with 0.4 µl of reverse transcriptase (RT) product, 0.18 µl each of forward and reverse primers (20 pmol/ml) and 4.5 µl of SYBRGreen Mastermix (Roche, Basel, Switzerland). After qPCR, the PCR products were run on a 2% agarose gel and were cloned using the Topocloning kit (Life Technologies, Saint Aubin, France) and sequenced. Primers used in this study are described in Supplementary Table 1.
Quantitative PCR (qPCR) was designed according to the MIQE standards38. Among the 87 items to review, 57 were classified as essential. All were followed. In particular, to determine the best human housekeeping gene, five genes were evaluated: B2M, GAPDH, GUS, P0, and PPIA. A MANOVA test has demonstrated that none of these genes were suitable for housekeeping since significant statistical changes were observed between the different groups. GUS, P0, and PPIA were then chosen to calculate the expression normalization factor for each sample using geNorm software (V3.5). To determine the best housekeeping mouse gene, 6 genes were evaluated: Gapdh, P0, Hprt1, β-actin, β-tubulin, and 18 S, and P0 was chosen.
A one-way ANOVA was used for all the experiments, followed by the Fisher’s Least Significant Difference multiple comparison test. A sample-size power analysis was not performed. Differences were considered to be statistically different at p* < 0.05; **<0.01; ***<0.001
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We deeply thank all the patients involved in this study. V.M., F.M., T.V., and J.D. are supported by the National Institute for Health Research Biomedical Research Centre at Great Ormond Street Hospital for Children NHS Foundation Trust and University College London. P.M.M. acknowledges funding from the National Institute for Health Research (NIHR) Rare Diseases Translational Research Collaboration (RD TRC) and from the NIHR University College London Hospitals (UCLH) Biomedical Research Centre (BRC). The views expressed are those of the authors and not necessarily those of the UK National Health Service (NHS), the NIHR, or the Department of Health. The MRC Centre for Neuromuscular Diseases Biobank and the Myobank-AFM tissue bank are acknowledged for providing patients’ serum and biopsy samples. The NIHR GOSH BRC and the Muscular Dystrophy UK support to the GOSH and UCLH Neuromuscular Centres are also gratefully acknowledged. We thank Genethon’s platforms for excellent technical assistance and Karine Poulard for help with mouse genotyping. This work was funded by the Association Française contre les Myopathies (AFM-Telethon), France, a grant from Myotubular Trust, UK, to A.B.B., and the FSH Society Grant FSHS-42017-SG01 to J.D.
Electronic supplementary material
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