Abstract
Ehlers–Danlos syndromes (EDS) are a group of connective tissue disorders caused by mutations in collagen and collagen-interacting genes. We delineate a novel form of EDS with vascular features through clinical and histopathological phenotyping and genetic studies of a three-generation pedigree, displaying an apparently autosomal dominant phenotype of joint hypermobility and frequent joint dislocations, atrophic scarring, prolonged bleeding time and age-related aortic dilatation and rupture. Coagulation tests as well as platelet counts and function were normal. Reticular dermis displayed highly disorganized collagen fibers and transmission electron microscopy (TEM) revealed abnormally shaped fibroblasts and endothelial cells, with high amount and irregular shape of extracellular matrix (ECM) substance, especially near blood vessels. Genetic analysis unraveled a heterozygous mutation in THBS2 (NM_003247.5:c.2686T>C, p.Cys896Arg). We generated CRISPR/Cas9 knock-in (KI) mice, bearing the heterozygous human mutation in the mouse ortholog. The KI mice demonstrated phenotypic traits correlating with those observed in the human subjects, as evidenced by morphologic, histologic, and TEM analyses, in conjunction with bleeding time assays. Our findings delineate a novel form of human EDS with classical-like elements combined with vascular features, caused by a heterozygous THBS2 missense mutation. We further demonstrate a similar phenotype in heterozygous THBS2Cys896Arg KI mice, in line with previous studies in Thbs2 homozygous null-mutant mice. Notably, THBS2 encodes Thrombospondin-2, a secreted homotrimeric matricellular protein that directly binds the ECM-shaping Matrix Metalloproteinase 2 (MMP2), mediating its clearance. THBS2 loss-of-function attenuates MMP2 clearance, enhancing MMP2-mediated proteoglycan cleavage, causing ECM abnormalities similar to those seen in the human and mouse disease we describe.
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Introduction
Ehlers–Danlos syndrome (EDS) is a heterogenous group of inherited connective tissue disorders. To date, 14 different clinical types of EDS have been described, featuring dominant or recessive modes of heredity [1,2,3,4]. The classic form of EDS comprises joint hypermobility, hyperextensible skin and skin fragility. Aside from the classic EDS phenotype, other subtypes manifest additional attributes, such as vascular or skeletal involvement. Vascular involvement, exemplified by aneurysms and dissections, is a prominent characteristic of vascular type EDS (vEDS), caused by heterozygous pathogenic variants in COL3A1. Nonetheless, such vascular involvement has been documented also in other EDS subtypes [1, 5]. The clinical overlap among EDS subtypes highlights the necessity for precise molecular diagnoses in affected individuals.
The molecular pathways leading to EDS are diverse. These include dominantly-inherited structural abnormalities of fibrillar collagens, exerting their effect through haploinsufficiency or dominant negative mechanisms; and recessively-inherited defects in collagen and other extracellular matrix-modifying enzymes [6,7,8] that instigate disease through loss of protein function.
Through clinical phenotyping, histological analysis and electron microscopy, combined with molecular genetic studies, we describe a dominantly-inherited previously uncharacterized connective tissue disease with features of EDS with prominent vascular involvement, caused by a heterozygous pathogenic variant in THBS2.
Methods
Patients and clinical evaluation
In accordance with Helsinki principles, participants in this study provided written informed consent as per protocols approved by the Soroka Medical Center institutional review board (approval #5071G) and the Israel National Committee for Human Genetic Studies (approval #920100319). Senior dermatologists and geneticists conducted the phenotyping.
Genetic analysis
DNA was extracted from peripheral blood leukocytes using E.Z.N.A Blood DNA kit (Omega Bio-tek, Nor-cross, GA, USA). Whole-exome sequencing was performed by Macrogen® using Agilent SureSelect Exome V7 library construction enrichment kit and Illumina NovaSeq6000 system with 150 bp paired-end reads. Raw data reads were aligned to GRCh38 reference genome using BWA-MEM [9] with variant calling facilitated by GATK 4.2.0.0 [10]. Data were analyzed using our in-house software. Our filtration cascade omitted common variants (>0.1%) in multiple databases (gnomAD [11] 2.1.1 and 3.1.2, ALFA [12], 1000 genomes project [13] and our in-house database of 800 exomes and genomes), unless established as pathogenic by ClinVar [14] or the Human Gene Mutation Database (HGMD) [15]. Following filtration, variants shared by both affected individuals (Fig. 1A, III:1 and III:2) were assessed based on previous scientific literature, inspection of shared variants in SRA samples using GeniePool [16], relevant gene expression based on GTEx [17] and Human Protein Atlas [18, 19] and evolutionary conservation based on phyloP [20]. Verification of the pathogenic variant and segregation analysis within the affected kindred was done using Sanger sequencing.
Histology and electron microscopy
Skin biopsies, obtained from the upper back of patient III:1 and of unrelated age-matched healthy individual and backs and tails of 4 months old mice, were used for histological analysis and for electron microscopy.
Human skin samples and mouse tail and skin samples for histological examination were fixed in 4% paraformaldehyde in 0.1 M phosphate buffer (pH-7.4) overnight at room temperature. Samples were processed for embedding in paraffin and 5 µm-thick sections were stained with hematoxylin-eosin (H&E), or for Masson’s trichrome stain according to manufacturer’s instructions (Sigma-Aldrich). Slides were imaged using an Olympus BX53 upright microscope.
For human samples electron microscopy, skin tissue was fixed with 2.5% glutaraldehyde and 1% paraformaldehyde in Sorenson buffer for 1 h at room temperature (RT), then moved to 4 °C overnight. The tissue was washed with 0.1 M Sodium Cacodylate buffer and stained with 1% Osmium TetraOxide in Cacodylate buffer, and then with 1% uranyl acetate for 1 h at RT. The tissue was then dehydrated and embedded in Epon 812. Ultra-thin (75 nm) sections were cut using Leica UC7 ultramicrotome. Sections were transferred to copper grids and visualized using a Talos L120C Transmission Electron Microscope at an accelerating voltage of 120 kV. Mice samples were visualized using Talos F200C transmission electron microscope operating at 200 kV.
Generation of Thbs2 CRISPR/Cas9-mediated mutant mice
Knock-in C57BL/6J mice, harboring p.Cys896Arg mutation in the mouse Thbs2 ortholog, were generated at The National Genetically Engineered Mouse Models (GEMM) Unit at the Hebrew University of Jerusalem using the CRISPR/Cas9 system [21, 22]. We designed sequences of sgRNA (5’-AUUGUCAUCAUCAGAGUCGC-3’) and ssODN (5’-TGCCCATACATCTCCAACTCCAACCAGGCTGACCATGACAACGACGGCAAGGGCGATGCACGCGACTCTGATGATGACAATGATGGTGTTCCAGATGACAGGGACAACTGTCGGCTTGTG- 3’) utilizing the Benchling platform (https://www.benchling.com/crispr) and procured these from IDT (Integrated DNA Technologies, Coralville, Iowa, USA). Sanger-sequencing-confirmed F0 male knock-in heterozygote was crossbred with wild type (WT) C57BL/6J mice to generate F1 mice, which were bred with WT mice to generate F2 mice, resulting in littermate cohorts of WT and heterozygotes for subsequent experimentation.
Mice maintenance and ethics statement
Mice were maintained in the animal facility of the Ben-Gurion University of the Negev on a 12:12 h light/dark schedule at temperatures of 20–24 °C and 30–70% humidity with no food limitation. In-vivo experiments were preformed according to the National Institutes of Health guidelines for care and use of laboratory animals (NIH publications No. 8023, revised 1978) and according to the guidelines of the Israeli Council on Animal Care. Experimental protocols were approved by the Committee on Animal Care and Use of Ben-Gurion University of the Negev.
Bleeding time assay
Standard 50 ml tubes were modified generating 5 air vents and one central hole in the tube lid. Standard food pellets were added to the tube as a distraction for the mice. Tubes were positioned horizontally on a receptacle, with a second 50 ml tube containing PBS (Dulbecco’s Phosphate Buffered Saline without magnesium or calcium, Sartorius™) vertically bellow its lid. Each mouse was individually placed into the modified tube, aligning its tail with the hole in the lid, so that the tail was leveled with the mouse’s heart. Then, under video surveillance, a 0.5 cm portion of the mouse tail tip was severed and immersed in the PBS tube. Bleeding duration was assessed as the time from the tail tip was cut to the visual cessation of blood flow in the tube, or to a maximum of 12 min, after which manual pressure was applied to the tail to arrest bleeding. The assay was conducted on eight 4-month old F2 male mice, born on the same day and derived from two litters, each consisting of 2 heterozygotes and 2 WT mice.
Results
Clinical findings
The index case (patient III:1, Fig. 1A), a female of Ashkenazi Jewish ancestry in her late twenties, presented with a history of multiple joint dislocations (including jaw, shoulder, thigh, knee and ankle joints) and tendon rupture (anterior talo-fibular ligament; ATFL), easy bruising, prolonged wound healing, and lower limb muscle fatigue following exercise. Her physical examination revealed a BMI of 35 and prominent joint hypermobility, with Beighton score of 5/9: passive dorsiflexion and hyperextension of the fifth MCP joint beyond 90° (2/2 points); passive apposition of the thumb to the flexor aspect of the forearm (2/2 points); active forward flexion of the trunk with the knees fully extended so that the palms of the hands rest flat on the floor (1/1 point). Also evident were atrophic scarring and the presence of piezogenic papules on the medial aspect of her feet (Fig. 1A). Significant skin hyperextensibility was not observed. The sister (III:2, in her thirties) and mother (II:1, in her fifties) of III:1 had similar findings and her maternal grandfather (I:1) had cerebral aneurysms and died of dissection of the abdominal aorta during the seventh decade of life (Fig. 1B). Notably, III:2 suffered from symphysiolysis while giving birth and reported increased flexibility while breastfeeding. Her child was not evaluated due to parents’ preference.
Significantly, each of the three affected patients has had at least five imaging tests in the last ten years, including CTs, X-rays, MRIs and skeletal scintigraphy for each. Patient III:1 was diagnosed with bilateral greater saphenous vein insufficiency (GSVI). II:1 was diagnosed with unilateral GSVI. Cardiac echocardiogram of II:1 demonstrated a thickened mitral valve and a dilated aortic arch, which was further displayed by chest MRI angiography to be 4.2 cm wide (Fig. 1C, D). Thoracic aorta diameter was normal. Brain MRI angiography done for III:1 in her twenties and for II:1 in her fifties were normal. There was no evidence of cardiomyopathy in any of the patients.
Prolonged bleeding was evident in the affected individuals: II:1 reported she had bled extensively while delivering both of her daughters. Furthermore, following skin punch biopsy from III:1 and a healthy matched control, III:1 experienced continuous bleeding for over 20 min while the control did not bleed after the procedure. Platelet counts, prothrombin time, and INR were within normal limits in all available affected individuals. Additional tests done for III:1 and III:2, including Von Willebrand factor, clotting factor VIII, Fibrinogen, and platelet function using the INNOVANCE® PFA-200 System, did not indicate any clotting abnormalities (Supplementary Table 1).
Molecular genetics
Testing patient III:1, no variants were identified within the coding sequence of a panel of 15 known EDS-related genes (ADAMTS2, ATP7A, CHST14, COL12A1, COL1A1, COL1A2, COL3A1, COL5A1, COL5A2, CRTAP, FKBP14, FLNA, P3H1, PLOD1, SLC39A13). Analysis of whole-exome sequencing data from III:1 and III:2 did not identify pathogenic variants in genes previously associated with EDS (including AEBP1, not tested in the above panel), and revealed 43 heterozygous variants shared by the two affected individuals, that were not ruled out by our pipeline. However, further bioinformatics analysis showed that most of the 43 variants were frequent in Ashkenazi Jews, a population highly represented in our in-house and public databases, and were therefore dismissed. All other variants were ruled out through segregation analysis in the extended family, except for THBS2 NM_003247.5:c.2686T>C p.Cys896Arg, that stood out as a plausible disease-causing pathogenic variant: it was not found in over 260,000 controls from multiple databases, including gnomAD, in which >7000 samples are of Ashkenazi Jews. Furthermore, Sanger sequencing demonstrated that the THBS2 variant segregated within the studied family consistent with fully-penetrant dominant inheritance (Fig. 2A); although a DNA sample and detailed phenotyping were not available for the deceased individual I:1, I:2 was shown not harbor the pathogenic variant, suggesting that the THBS2 variant was likely inherited from I:1, who died of aortic dissection.
The p.Cys896Arg variant lies within a highly evolutionary-conserved region of THBS2 (Fig. 2B). According to the solved protein structure, it putatively eliminates a critical disulfide bond formed by the 876th and the 896th amino acids of THBS2 (Fig. 2C). Notably, THBS2 is highly expressed in fibroblasts and arteries, and has been clearly linked to extra cellular matrix (ECM) remodeling. Moreover, Thbs2 null mutant mice have been previously shown to display an EDS-like phenotype with prolonged bleeding time [23].
Heterozygous Thbs2 p.Cys896Arg CRISPR/Cas9 knock-in mice
Heterozygote knock-in Thbs2 p.Cys896Arg mice that we generated (Fig. 3A) initially appeared healthy and normal. However, by the age of 3 months they were easily differentiated from WT mice simply by tactile interaction such as grabbing their tail: the tails of heterozygous mice were remarkably flexible, so that they could be effortlessly knotted at the ends without causing any visible distress to the mice (Fig. 3B, C). Moreover, when lifting heterozygous mice by the tail and subsequently releasing it, the tail preserved its arched form, nearly mirroring the shape it assumed while being held (Fig. 3C). At the age of 4 months, the mice were significantly more flexible and felt different when being handled. Notably, pregnancies enhanced the disease process: female mutant mice became flexible following parturition, exhibiting hyper-flexibility (both per subjective assessment and by ability to tie a knot at tail ends) as early as 2 months of age, to an extent similar to that evident in male and non-pregnant female heterozygous mice at age 4 months.
A stark contrast was observed in the bleeding times of the WT and mutant mice. The four WT mice tested exhibited bleeding times of under 4 min, specifically ranging from 200 to 240 s. Conversely, one mutant mouse had bled for 11 min, and the other three for periods exceeding 12 min, which necessitated the termination of the experiment for these subjects (Fig. 3D).
Light microscopy
Human studies - histological examination of skin biopsy of III:1: hematoxylin and eosin (H&E) staining revealed thin and disorganized collagen fibers in the reticular dermis, with mucinous material observed in the interspaces. Additionally, the reticular dermis exhibited an increased presence of dilated blood vessels in contrast to the control sample (Fig. 4A, B). Masson trichrome (MT) staining highlighted the disorganized collagen fibers in the papillary dermis (Fig. 4C, D) and even more so in the reticular dermis (Fig. 4E, F). Notably, findings in the reticular dermis demonstrate that while both samples were prepared using the same protocol, collagen fibers in the mutant sample were highly fragmented. Periodic Acid-Schiff (PAS) staining was negative. Alcian blue staining demonstrated patchy positivity, suggesting the presence of mucin within the substance observed between the collagen fibers (data not shown). Examination of the epidermis did not yield any significant findings.
Mouse histological examination was performed for both male and female, WT and heterozygous mice using H&E and MT staining (Supplementary Fig. 1). H&E (Supplementary Fig. 1A–D) and MT findings were in line with those of the human subjects, demonstrating disorganized collagen fibers in the reticular dermis in both male and female mutant mice.
Electron microscopy
TEM studies of human affected individual III:1 revealed abnormally-shaped fibroblasts and endothelial cells, as well as unusually high quantity and irregular shape of extracellular matrix (ECM) substance, particularly in the proximity of blood vessels (Supplementary Fig. 2A, E). When comparing human control and mutant collagen fibrils, no unusual differences were found (Supplementary Fig. 2B, F).
However, a stark contrast was observed when assessing the mutant mice collagen fibrils, which were larger and displayed irregular contours, evidently in the tail samples (Supplementary Fig. 2C, G), and even much more so in skin samples (Supplementary Fig. 2D, H). The mice skin samples were devoid of blood vessels.
Discussion
We describe a three generation family with multiple subjects affected by a dominantly inherited connective tissue disorder, that can be clinically classified as EDS: according to criteria of the 2017 International Classification of EDS [1], the disease we delineate is reminiscent of classic EDS phenotype per Beighton score [24] (1 major criterion - 5/9, and 4 minor criteria – easy bruising, soft doughy skin, multiple sprains and subluxations and positive family history of a similar disorder), albeit with prominent vascular features.
The extracellular matrix (ECM) comprises structural proteins, such as collagens, fibronectin and laminin, among multiple other protein constituents. These elements are paramount for maintaining the ECM’s integrity and organization [25]. Of these, matricellular proteins are the non-structural ECM components, influencing ECM assembly through cell-matrix interactions and cellular signaling [26]. To date, pathogenic variants in multiple genes encoding fibrillar collagens, collagen and other extracellular matrix-modifying enzymes [6,7,8] as well as extracellular matrix proteins [1, 27], have been found to cause connective tissue disorders that can be defined as subtypes of EDS. Through our complementary human and mouse studies, we demonstrate that the novel form of EDS we describe is caused by a heterozygous missense pathogenic variant in THBS2. Thrombospondin-2, encoded by THBS2 (MIM 188061), is a secreted homotrimeric matricellular protein [28,29,30,31]. It was shown to directly bind Matrix Metalloproteinase 2 [32] (MMP2, MIM 120360), an ECM -shaping metalloproteinase and angiogenesis modifier [33], and to mediate its clearance [34]. Moreover, it has been shown in-vitro and in mice that THBS2 loss-of-function modulates MMP2 clearance, leading to higher amounts of ECM MMP2, known to enhance MMP-2-mediated cleavage of the proteoglycan decorin [35, 36]causing extracellular matrix abnormalities [31, 34, 37] similar to those seen in the histological and EM studies of the human disease we describe. As decorin has been shown to interact with collagen 12 [38], it is thus also feasible that the disease process involves downstream effects on collagen 12. Further studies, beyond the scope of this manuscript, are in place to delineate the detailed downstream disease mechanism.
Of note, a recent manuscript suggests that hypermobility presentation may be dependent on folate status affecting MMP2 molecular pathways, and that EDS-related hypermobility could possibly be modulated by 5-methyltetrahydrofolate supplementation [36]. Thus, future studies are in place to assess possible effects of 5-methyltetrahydrofolate supplementation in both the human and mouse THBS2 disease we describe.
Findings derived from GTEx [17] regarding THBS2 show that the protein is mainly expressed in large blood vessels such as the aorta, coronary arteries and tibial artery. Patient I:1 died from abdominal aorta dissection at the age of 70 and II:1 displayed enlarged ascending aortic arch at 50 years of age (Fig. 1C, D). Progressive aortic root dilatation, spontaneous rupture of large arteries and intracranial aneurysms have only rarely been reported in classical EDS patients [39,40,41], and increased tissue vascularity is not a feature of this disorder, suggesting that EDS caused by the heterozygous THBS2 pathogenic variant represents a distinct clinical entity.
Homozygous null-mutant Thbs2 mice display a variety of connective tissue abnormalities, including lax skin, ligaments and tendons, disorganized abnormally shaped collagen fibers and increased number of small to medium sized blood vessels in the skin and subcutaneous tissue, as well as a bleeding diathesis and enhanced cardiac aging resulting in dilated cardiomyopathy, thereby highlighting the important role of this protein in connective tissue homeostasis [23, 28]. Many features observed in the affected heterozygote human subjects recapitulate the findings in the mouse Thbs2 knockout (KO) model. However, the fact that the affected humans were heterozygous for the THBS2 mutation made the THBS2 variant into a non-obvious candidate for causing the described disease. Thus, we resorted to generate CRISPR/Cas9-KI Thbs2 p.Cys896Arg heterozygous mice, recapitulating the previously described findings in homozygous KO Thbs2 mice in each of our assays.
Both the previously reported Thbs2 homozygous KO mice and the heterozygous Thbs2 p.Cys896Arg KI mutant mice we generated displayed disordered collagen fibers with larger diameter and abnormal contour that was different in scale when comparing skin and tail tissues (Supplementary Fig. 2) [23]. However, the collagen fibers in the human samples affected by the disease did not show significant differences compared to those in the healthy control; while cauliflower-like collagen fibrils are clearly evident in the skin samples of mutant mice, they are less pronounced in their tail samples and absent in the human mutant samples. These differences suggest that additional factors may influence the extent to which THBS2 affects collagen modeling, potentially including variations in collagen type composition between humans and mice and moreover in their different tissues. Understanding the cause of these differences may thus be helpful in discovering ways to mitigate the disease.
Interestingly, echocardiography of the affected subjects did not reveal the presence of age-related cardiomyopathy, observed in the KO mouse model, possibly reflecting the relatively young age of the examined family members, as well as possible partial penetrance of this feature in this disorder. Nevertheless, at this point it seems reasonable to include long-term cardiac assessment in the clinical follow-up of patients with THBS2-related EDS as well as further cardiac evaluation of the KI mice.
Most notably, our findings demonstrate that the THBS2 p.Cys896Arg variant, being sufficient to cause a disease in a heterozygous state, has a dominant effect. More specifically, THBS2 is a homotrimer and the mutated cysteine at the 896th position of the protein is known to create a disulfide bond at the 876th position (Fig. 2). This missense mutation putatively alters the protein’s structure, yet still enables it to bind other functioning proteins and disable them. Capability of THBS2 mutations to have a dominant effect is well in line with the fact that somatic heterozygous THBS2 pathogenic variants can serve as cancerous driver, enabling tumor expansion through the disorganized extracellular matrix caused by the same processes shown in this study [42,43,44]. It is plausible that cancer cells producing malformed THBS2 monomers can cause local organ dissemination and increase invasiveness. Moreover, it may be of interest to test whether germline THBS2 pathogenic variants might facilitate metastatic processes in tumors that are located in collagen-enriched organs. Notably, no malignancies were reported in the affected individuals of all generations.
Data availability
The datasets generated and/or analyzed during the current study are available from the corresponding author on reasonable request.
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Acknowledgements
The authors wish to acknowledge support by Raquel Isidoro Silva Maria and Dr. Alexander Upcher of the Ben Gurion University electron microscopy unit and by Dr. Lihi Shaulov of the Technion electron microscopy core facility.
Funding
The study was supported by the Morris Kahn Family Foundation, Israel Science Foundation (ISF) grants 2034/16 and 2463/23, and by the National Knowledge Center for Rare/Orphan Diseases sponsored by the Israel Ministry of Science, Technology and Space, Ben-Gurion University of the Negev, Beer-Sheva, Israel. Open access funding provided by Ben-Gurion University.
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The manuscript was written by NH with assistance from OSB and MES. NH and OP performed DNA extraction, as well as variant and segregation analyses. YY contributed to variant analysis and raising mechanism hypotheses. Mouse generation and experiments were conducted by NH with support from SSH in mouse handling. IC and HL carried out the preprocessing of mouse skin samples and their histological analysis. ED conducted the preprocessing and histological analysis of human skin samples. VD assisted in patient recruitment. IS was responsible for MRA imaging and its interpretation. MES conducted clinical evaluations and performed human skin biopsies. The study was supervised by OSB.
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The authors declare no competing interests.
Ethical approval
The participants of this study provided written informed consent according to a protocol approved by the Soroka Medical Center institutional review board (approval #5071G) and by the Israel National Committee for Human Genetic Studies (approval #920100319), in adherence with the Helsinki principles. The patients in this manuscript have given written informed consent to publication of their case details. Mouse experiments were preformed according to the National Institutes of Health guidelines for care and use of laboratory animals (NIH publications No. 8023, revised 1978) and according to the guidelines of the Israeli Council on Animal Care. Experimental protocols were approved by the Committee on Animal Care and Use of Ben-Gurion University of the Negev.
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41431_2024_1559_MOESM2_ESM.pdf
Supplementary figure 2. Transmission electron microscopy of human and mouse THBS2 p.Cys896Arg heterozygotes and wild-type controls.
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Hadar, N., Porgador, O., Cohen, I. et al. Heterozygous THBS2 pathogenic variant causes Ehlers–Danlos syndrome with prominent vascular features in humans and mice. Eur J Hum Genet (2024). https://doi.org/10.1038/s41431-024-01559-1
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DOI: https://doi.org/10.1038/s41431-024-01559-1