Abstract
Evidence for the involvement of N6-Methyladenosine (m6A) modification in the etiology and progression of liver fibrosis has emerged and holds promise as a therapeutic target. Insulin-like growth factor 2 (IGF2) mRNA-binding protein 2 (IGF2BP2) is a newly identified m6A-binding protein that functions to enhance mRNA stability and translation. However, its role as an m6A-binding protein in liver fibrosis remains elusive. Here, we observed that IGF2BP2 is highly expressed in liver fibrosis and activated hepatic stellate cells (HSCs), and inhibition of IGF2BP2 protects against HSCs activation and liver fibrogenesis. Mechanistically, as an m6A-binding protein, IGF2BP2 regulates the expression of Aldolase A (ALDOA), a key target in the glycolytic metabolic pathway, which in turn regulates HSCs activation. Furthermore, we observed that active glycolytic metabolism in activated HSCs generates large amounts of lactate as a substrate for histone lactylation. Importantly, histone lactylation transforms the activation phenotype of HSCs. In conclusion, our findings reveal the essential role of IGF2BP2 in liver fibrosis by regulating glycolytic metabolism and highlight the potential of targeting IGF2BP2 as a therapeutic for liver fibrosis.
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Introduction
Liver fibrosis is a prevalent pathological process observed in various chronic liver diseases, characterized by the excessive deposition of extracellular matrix (ECM) [1]. Apart from removal of the underlying cause or liver transplantation, no effective treatment for liver fibrosis has yet been identified [2]. The activation and phenotypic transformation of quiescent hepatic stellate cells (HSCs) are believed to play a crucial role in initiating liver fibrosis [3]. This activation process necessitates metabolic reprogramming, including the adoption of aerobic glycolysis and increased energy availability [4]. Aerobic glycolysis serves as a significant metabolic signature of HSCs activation [5]. A growing body of evidence suggests that HSCs employ aerobic glycolysis during activation, and inhibiting this process effectively halts HSCs activation [6,7,8]. However, the precise role and mechanism of lactate accumulation resulting from aerobic glycolysis in the activation of HSCs remain unclear.
Lactate has traditionally been regarded as a byproduct of anaerobic glycolysis with no significant biological function. However, emerging evidence suggests that lactate can serve as a crucial bio-signaling molecule involved in immunomodulation and gene expression, in addition to its role as an energy source [9]. Recent studies have identified lactate as a substrate for histone lactylation, a process in which lactate accumulated during cellular metabolism modifies lysine residues on histones, thereby promoting the transcription of specific genes [10]. Notably, histone lactylation has been found to impact tumorigenesis [11,12,13], endothelium function [14], and neuromodulation [15]. Consequently, the study of histone lactylation holds great potential for advancing our understanding of the underlying mechanisms of liver fibrosis.
Insulin-like growth factor 2 (IGF2) mRNA-binding protein 2 (IGF2BP2) is a member of the IGF2 mRNA-binding protein family (IGF2BPs) and functions as an RNA-binding protein that governs diverse biological processes. It possesses several RNA-binding structural domains, namely four C-terminal heterologous ribonucleoprotein K homology (KH) (KH1-KH4) domains and two N-terminal RNA recognition motifs [16], and are involved in the regulation of a wide range of RNA processing mechanisms, such as localization, stability, and translation [17]. Accumulating evidence suggests that IGF2BP2 plays a significant role in various liver diseases, such as nonalcoholic steatohepatitis [18], fatty liver [19], hepatic steatosis [20], liver fibrosis [21], and liver cirrhosis [22]. It is worth noting that there is an increasing body of evidence indicating that IGF2BP2 regulates metabolic pathways in cells through post-transcriptional mechanisms, including glycolysis [23, 24], glutamine metabolism [25], and lipid metabolism [20]. However, the impact of IGF2BP2-mediated metabolic changes on liver fibrosis remains uncertain.
In this study, we present evidence suggesting that IGF2BP2 plays a role in liver fibrogenesis by regulating glycolytic metabolism. Our findings indicate that IGF2BP2 is upregulated in liver fibrosis, and silencing IGF2BP2 protects against carbon tetrachloride (CCl4)-induced liver fibrosis. In vitro experiments further demonstrate that silencing IGF2BP2 inhibits the activation of HSCs. Mechanistically, we propose that IGF2BP2 enhances the stability of the m6A-modified transcript Aldolase A (ALDOA) in the glycolytic metabolic pathway, which is crucial for HSC activation. Additionally, our study reveals that lactate produced by activated HSCs acts as a substrate for lactylation, and correcting aberrant lactylation level can alter the activation phenotype of HSCs.
Results
IGF2BP2 expression is elevated in liver fibrosis and cirrhosis
Initially, we evaluated the expression of IGF2BP2 by examining multiple Gene Expression Omnibus (GEO) datasets. Through the analysis of the GSE55747 dataset, we observed an increased expression of Igf2bp2 in liver fibrosis induced by CCl4 (Fig. 1a). In concurrence with the findings from the GSE102383, GSE25097, and GSE6764 datasets, it has been observed that the expression of IGF2BP2 is significantly increased in cirrhotic livers when compared to normal control livers (Fig. 1b–d). Moreover, according to the GSE84044 dataset, it was observed that the expression of IGF2BP2 was increased in individuals with notable fibrosis (scheuer score S2-4) in comparison to those without significant fibrosis (scheuer score S0-1, Fig. 1e). In a follow-up dataset analysis involving individuals diagnosed with cirrhosis (GSE15654), it was observed that patients with hepatocellular carcinoma (HCC) exhibited significantly higher levels of IGF2BP2 expression compared to those without HCC (Fig. 1f). Furthermore, heightened IGF2BP2 expression was found to be associated with a poorer prognosis in these patients (Fig. 1g).
A IGF2BP2 expression in liver fibrosis and cirrhosis from the GEO database. (a) Igf2bp2 expression in CCl4-induced liver fibrosis and normal control from GSE55747. b–d IGF2BP2 expression in liver cirrhosis and normal control from GSE102383, GSE25097, and GSE6764. e IGF2BP2 expression in patients with Scheuer scores S0-1 and S2-4 from GSE84044. f IGF2BP2 expression in cirrhotic patients who develop HCC and those who do not develop HCC from GSE15654. g IGF2BP2 expression in cirrhotic patients with good or poor prognosis from GSE15654. B IGF2BP2 expression in cirrhosis retrieved from the Human Liver Proteome Database. C–E Correlation analysis of IGF2BP2 expression with ACTA2 and COL1α1 expression in cirrhotic samples from GSE25097 (n = 40) and GSE15654 (n = 216). Representative H&E staining and Masson’s trichrome staining images (F) and bar plot (G) in CCl4-induced fibrotic livers of mice and livers of human patients with cirrhosis (scale bars, 100 µm). H Igf2bp2, Acta2, and Col1α1 mRNA expression in CCl4-induced fibrotic livers of mice. I Correlation analysis of Igf2bp2 mRNA expression with Acta2 mRNA expression and Col1α1 mRNA expression. Levels of IGF2BP2 in CCl4-induced fibrotic livers of mice and livers of human patients with cirrhosis revealed by immunoblotting (J) and bar plot (K). L Serum levels of IGF2BP2 in cirrhotic patients (n = 46) and healthy donors (n = 24). M The receiver operating characteristic (ROC) curve demonstrates the efficacy of IGF2BP2 combined with alanine transaminase (ALT) in predicting cirrhosis. *P < 0.05, **P < 0.01, ***P < 0.001, ****P < 0.0001.
In the Human Liver Proteome Database (http://www.liverproteome.org/), IGF2BP2 was retrieved as a significantly expressed protein in liver cirrhosis (Fig. 1B). In a correlation study between IGF2BP2 and representative markers of liver fibrosis, based on cirrhotic samples (n = 40) from the GSE25097 dataset, ACTA2 (actin alpha 2) expression and collagen alpha 1 (COL1α1) expression both exhibited a substantial positive correlation with IGF2BP2 expression (Fig. 1C, D. p = 3.8e-9, r = 0.78; p = 1.8e-7, r = 0.72, respectively). The dataset GSE15654 also demonstrated a positive correlation between the expression of IGF2BP2 and COL1α1 in cirrhotic samples (n = 216) (p = 3.7e-4, r = 0.24, Fig. 1E).
Subsequently, we employed CCl4 to induce liver fibrosis in mice, with the aim of investigating the expression of IGF2BP2 in fibrotic liver tissues. Furthermore, we obtained samples of human livers, including both normal and cirrhotic liver tissues (n = 4 for each group). The liver tissues exhibited abnormal morphology and the presence of fibrosis, as evidenced by hematoxylin and eosin (H&E) staining and Masson’s trichrome staining (Fig. 1F, G) Significantly, the upregulation of IGF2BP2 in fibrotic livers was validated through quantitative reverse transcription polymerase chain reaction (qRT-PCR) analysis, and demonstrated a parallel increase in the expression of key genes (ACTA2, COL1α1) associated with the advancement of liver fibrosis (Fig. 1H, I).
Immunoblotting analysis showed elevated levels of IGF2BP2 in fibrotic liver samples compared to normal liver tissue (Fig. 1J, K). These findings collectively suggest heightened expression of IGF2BP2 in fibrotic livers and provide substantial evidence for a significant correlation with human liver fibrosis.
In order to assess the potential utility of IGF2BP2 as a marker for cirrhosis, a total of 46 serum samples from cirrhotic patients and 24 samples from healthy individuals were collected. Enzyme linked immunosorbent assay (ELISA) revealed that patients with cirrhosis exhibited higher levels of IGF2BP2 in their serum (Fig. 1L). Encouragingly, the combination of IGF2BP2 and alanine aminotransferase (ALT) demonstrated efficacy in predicting the presence of liver cirrhosis, as determined by receiver operating characteristic (ROC) analysis (Fig. 1M).
Inhibition of IGF2BP2 ameliorates CCl4-induced liver fibrosis
To confirm the role of IGF2BP2 in the development of liver fibrosis in vivo, we inhibited Igf2bp2 expression by the adeno-associated virus (AAV)8 system, known for its strong affinity for the liver. Additionally, we simulated liver fibrosis induced by CCl4 and administered AAV8 treatment two weeks prior to the initial injection (Fig. 2A). The expression of Igf2bp2 was notably hindered in the livers of mice following the AAV8 administration, indicating a successful infection with AA8-shIgf2bp2 (Fig. 2B). We subsequently investigated the incidence of fibrosis following AAV8 administration in the context of prolonged liver injury. Through the utilization of H&E staining, Masson’s trichrome staining, and sirius red staining, we observed that the severity of liver injury and fibrosis was reduced in mice treated with AAV-shIgf2bp2 compared with mice treated with AAV-NC (Fig. 2C–E). Immunofluorescence analysis consistently demonstrated that AAV8-shIgf2bp2 infection successfully inhibited the expression of α-smooth muscle actin (α-SMA) in the liver tissue of mice (Fig. 2F, G). Furthermore, the infection with AAV8-shIgf2bp2 exhibited a beneficial effect on liver function in mice, as evidenced by the reduction in serum levels of ALT and aspartate aminotransferase (AST) (Fig. 2H, I). In conclusion, the results of this study suggest that the suppression of IGF2BP2 expression in the liver can mitigate the advancement of liver fibrosis. Therefore, targeting IGF2BP2 may hold promise as a potential therapeutic strategy for the treatment of liver fibrosis.
A Schematic illustrating of the experimental design of AAV-shIgf2bp2 for the treatment of CCl4-induced liver fibrosis in mice. B Expression of Igf2bp2 in mouse liver samples treated in according to (A) (n = 4). Representative images (C) and bar plot (D, E) of H&E staining (upper), masson’s trichrome staining (middle) and sirius red staining (bottom) in mouse liver sections treated according to (A) (n = 6, scale bar, 100 µm). Representative images (F) and bar plot (G) of α-SMA expression (n = 3, scale bar, 100 µm) visualized by immunofluorescence in mouse liver sections treated according to (A). Serum levels of ALT (H) and AST (I) in mice treated according to (A). *P < 0.05, **P < 0.01, ***P < 0.001, ****P < 0.0001.
IGF2BP2 is upregulated in activated HSCs
The preceding data indicates IGF2BP2 potential involvement in the development of liver fibrosis. Given the significant involvement of HSCs activation in the development of liver fibrosis, our subsequent inquiry focused on examining the expression profile of IGF2BP2 in activated HSCs and its impact on the activation of these cells. In this study, the Human Protein Atlas (https://www.proteinatlas.org/) was utilized to determine the cell types expressing IGF2BP2 in the liver. The findings indicate that IGF2BP2 expression in the liver is primarily localized in vascular endothelial cells, cholangiocytes, and HSCs (Fig. S1A). In a comprehensive dataset analyzing gene expression profiles of HSCs (GSE67664), it was observed that the expression level of IGF2BP2 was higher in activated HSCs compared to quiescent HSCs (Fig. S1B).
The LX-2 cell line, which is derived from human HSCs, has been extensively studied and characterized. It displays key features related to fibrosis [26]. Consequently, we investigated the expression of IGF2BP2 in activated HSCs utilizing the LX-2 cell line. It has been shown that HSCs exhibit an active pro-fibrotic phenotype when grown in Dulbecco’s modified Eagle’s medium (DMEM) containing 10% fetal bovine serum (FBS) [27]. Next, we utilized a 10% FBS-stimulated model to detect IGF2BP2 expression. We observed that the expression of IGF2BP2 and ACTA2 were increased in LX-2 cells following a 1 h incubation with 10% FBS, in comparison to cells cultured in control medium containing 2% FBS. (Fig. S1C).
In the model of LX-2 cell activation induced by 1 ng/mL transforming growth factor-β1 (TGF-β1), it was observed that the levels of IGF2BP2 messenger RNA (mRNA) were markedly elevated following a 1 h exposure to TGF-β1, reaching their highest point after 6 h of treatment. (Fig. S1D). Moreover, the upregulation of ACTA2 and COL1α1 exhibited a temporal pattern and exhibited prolonged expression following TGF-β1 stimulation (Fig. S1D). Similarly, our study revealed that the protein expression levels of IGF2BP2 and α-SMA exhibited an increase following a 6 h induction of TGF-β1 (Fig. S1E). Together, these findings suggest that IGF2BP2 is upregulated in activated HSCs.
Inhibition of IGF2BP2 blocks HSCs activation in vitro
An altered phenotype of activated HSC has been demonstrated, including increased cell proliferation, migration to the site of injury, and expression of α-SMA [28, 29]. Given our findings that IGF2BP2 expression is upregulated in activated HSCs, we hypothesized that IGF2BP2 ablation hinders HSCs activation. To validate the hypothesis, we constructed cell lines with stable IGF2BP2 knockdown (KD) using short hairpin RNA (shRNA) in LX-2 cells (Fig. 3A, B). The results of the cell migration assay demonstrated that the activation of LX-2 cells induced by TGF-β1 led to an increase in cell migration. Cell migration was blocked in IGF2BP2 KD cells compared to cells transfected with sh-NC (Fig. 3C, D). By performing the 5-Ethynyl-2′-Deoxyuridine (EdU) incorporation assay, it was observed that around 60% of LX-2 cells stimulated by TGF-β1 exhibited labeling through EdU signaling, thereby suggesting a notable increase in the proliferation rate of LX-2 cells. Nevertheless, subsequent treatment of shIGF2BP2 resulted in a decrease in the proportion of EdU-positive cells (Fig. 3C, E). Furthermore, the inhibition of IGF2BP2 resulted in the suppression of α-SMA expression, as demonstrated by immunofluorescence analysis (Fig. 3C, F).
qRT-PCR (A) and immunoblotting (B) confirmed effective IGF2BP2 KD by shRNA in LX-2 cells. Representative images (C) and bar plot (D–F) of cell migration assays (upper, scale bar, 50 µm), EdU cell proliferation assays (middle, scale bar, 20 µm), and immunofluorescence (bottom, scale bar, 20 µm) in IGF2BP2 KD LX-2 cells, and shNC-transfected LX-2 cells treated with TGF-β1 as a positive control. Representative images (G) and bar plot (H) of oil red O staining in IGF2BP2 KD LX-2 cells treated or untreated with TGF-β1 for 24 h (scale bar, 20 µm). Representative images (I) and bar graphs (J) of oil red O staining of LX-2 cells pretreated with JX5 (blank, 10 µM, 30 µM) for 8 h, followed by treatment or untreatment with TGF-β1 for 24 h (scale bar, 20 µm). K ACTA2 and COL1α1 mRNA expression in LX-2 cells pretreated with JX5 (blank, 10 µM, 30 µM) for 8 h, followed by treatment with TGF-β1 for different time points (0, 6, 12 h). L ACTA2 mRNA expression in LX-2 cells cultured with 10% FBS treated with JX5 (blank, 10, 30 µM) for 1 h, and LX-2 cells cultured with 2% FBS as control. n.s., not significant; *P < 0.05, **P < 0.01, ***P < 0.001, ****P < 0.0001.
In a state of quiescence, HSCs store retinol within their cytoplasm. However, upon activation, HSCs undergo morphological changes characterized by an enlarged cytosol and the depletion of lipid droplets [30]. Subsequently, oil red O staining was conducted to visualize the generation of lipid droplets in LX-2 cells. Our results indicate that TGF-β1 induction markedly attenuated lipid droplet production in LX-2 cells, and importantly, shIGF2BP2 treatment reversed this effect of TGF-β1 (Fig. 3G, H). In conclusion, the role of IGF2BP2 in LX-2 cell proliferation, migration, α-SMA expression, and lipid droplet production was revealed. Together, these results suggest that inhibition of IGF2BP2 blocks HSCs activation and permits fibroblasts to transform into a quiescent phenotype.
Recently, a novel small-molecule inhibitor of IGF2BP2, named JX5, has been characterized and shown to exert activity by binding to IGF2BP2 [31]. As expected, we observed that both 10 µM and 30 µM JX5 treatments reversed TGF-β1-induced lipid droplet reduction (Fig. 3I, J). Moreover, our study revealed that the treatment of JX5 effectively counteracted the progressive increase of ACTA2 and COL1α1 induced by TGF-β1, achieving complete reversal within a 12 h (Fig. 3K). Consistently, in the 10% FBS-stimulated HSCs activation model, JX5 treatment reversed the upregulation of ACTA2 expression (Fig. 3L). These results reaffirm that inhibition of IGF2BP2 blocks HSCs activation.
IGF2BP2 is involved in the ECM pathway and glycolytic metabolic processes
To investigate the pathways and mechanisms through which IGF2BP2 facilitates the activation of HSCs, we conducted RNA sequencing (RNA-seq) analysis to compare the transcriptomes of LX-2 cells transfected with shNC and shIGF2BP2. Enrichment analysis was performed by running Gene Set Enrichment Analysis (GSEA), with Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway gene sets serving as the classification criteria. This analysis identified several intersecting KEGG pathways, including the TGF-beta signaling pathway (normalized enrichment score (NES) = 2.19, p < 0.001) and ECM-receptor interaction (NES = 2.02, p < 0.001) in shNC and shIGF2BP2 transfected LX-2 cells (Fig. 4A). Moreover, our analysis revealed that Gene ontology (GO) was employed as a classification criterion to enhance the composition of the ECM (NES = 2.55, p < 0.001), collagen-containing ECM (NES = 2.04, p < 0.001), ECM structural constituent (NES = 2.24, p < 0.001), and TGF-beta binding (NES = 2.17, p < 0.001) (Fig. 4A). These findings once again provide evidence for the strong correlation between IGF2BP2 and liver fibrosis, highlighting its significant contribution to the development of liver fibrosis.
A Performing GSEA enrichment analysis in IGF2BP2 KD LX-2 cells to demonstrate enrichment signaling pathways or biological processes involved in IGF2BP2. B Bubble diagram showing KEGG enrichment analysis in IGF2BP2 KD LX-2 cells. The y-axis is for KEGG terms. The size and color of the bubbles represent the number and significance of genes associated with the term, respectively. C Heatmap representation of glycolysis/gluconeogenesis processes-related genes differentially expressed in IGF2BP2 KD LX-2 cells. The color bar indicates the value of the Z-transformed expression.
In our analysis of GO, IGF2BP2 was involved in the regulation of RNA binding, mRNA processing, and mRNA stability, which is consistent with the previously reported biological functions of IGF2BP2 [32] (Fig. S2). KEGG analysis of the differentially expressed genes (DEGs) showed that IGF2BP2 was mainly involved in the TGF-beta signaling pathway, pyruvate metabolism, and glycolysis/gluconeogenesis processes (Fig. 4B). Moreover, a notable differential expression of crucial glycolytic genes, namely PGK1, PKM, PFKL, ENO1, ALDOA, LDHA, and LDHB, was observed in LX-2 cells transfected with shNC and shIGF2BP2 (Fig. 4C). These data indicate that IGF2BP2 may play a role in the regulation of glycolysis-related genes and have an impact on liver fibrogenesis through its involvement in glycolytic metabolism.
Lactate, the final byproduct of glycolytic metabolism, was examined in the serum of mice afflicted with liver fibrosis induced by CCl4. The findings revealed a notable increase in lactate levels within the serum of mice suffering from fibrosis (Fig. S3A). Additional investigations revealed a reduction in lactate levels within cells that underwent IGF2BP2 KD (Fig. S3B). Significantly, the depletion of IGF2BP2 resulted in an increase in glucose levels in the medium, indicating that the uptake of glucose is hindered in the absence of IGF2BP2 (Fig. S3C). Furthermore, we observed reduced Adenosine triphosphate (ATP) production in IGF2BP2 KD cells (Fig. S3D). Consistently, the treatment of JX5 to cells resulted in a reduction in lactate levels and a decline in ATP production (Fig. S3E, F). The data presented in this study indicate a significant impact of IGF2BP2 on glycolytic metabolism and the regulation of lactate levels.
IGF2BP2 regulates glycolytic metabolism by increasing ALDOA expression
The IGF2BP2 protein has been reported to stabilize m6A-modified mRNAs [25]. We focused on positively regulated genes in screening strategies for downstream targets of IGF2BP2. Combining the dataset of RNA immunoprecipitation (RIP) performed by IGF2BP1/2/3 (GSE90639), the RNA-seq data we performed in IGF2BP2 KD cells, and the highly expressed genes in activated HSCs (GSE67664), a total of 12 overlapping genes were obtained (Fig. 5A). Subsequently, a KEGG enrichment analysis was conducted on the 12 genes that exhibited overlap, revealing their predominant involvement in the metabolic processes of glycolysis and gluconeogenesis (Fig. 5B). This finding aligns with our prior data. Based on our strategy for screening downstream targets and the analysis of glycolytic pathways, we initially identified four genes (ALDOA, PGK1, ENO1, and LDHB) that are involved in glycolytic metabolism and show significant enrichment in the IGF2BP2 RIP according to the GSE90639 dataset (Fig. 5C), as potential targets of IGF2BP2. Given that IGF2BP2 has been shown to have a positive regulatory effect on the expression of target genes, we proceeded to investigate the impact of IGF2BP2 KD on the expression of these four genes using qRT-PCR. Unexpectedly, our findings revealed that only two of the genes, namely ALDOA and ENO1, exhibited a decrease in expression following IGF2BP2 KD (Fig. 5D).
A Venn diagram showing screening strategies for candidate downstream targets of IGF2BP2. B Bubble diagram showing Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis of candidate target genes screened by (A). The y-axis is for KEGG terms. The size and color of the bubbles represent the number and significance of genes associated with the term, respectively. C Expression of initially selected downstream targets (PGK1, LDHB, ENO1, and ALDOA) of IGF2BP2 in the GSE90639 dataset. D Expression of selected downstream targets (PGK1, LDHB, ENO1, and ALDOA) detected in RNA-seq and qRT-PCR, and metabolic schematic of selected targets in the glycolytic pathway. E RIP assay using IGF2BP2 antibody in IGF2BP2 KD or control LX-2 cells. F RIP assay using m6A antibody in LX-2 cells. G ALDOA mRNA half-life in IGF2BP2 KD or control LX-2 cells. H Interactions between IGF2BP2 and ALDOA were predicted based on POSTAR3 (http://postar.ncrnalab.org). I High-confidence m6A modification sites on ALDOA were predicted from SRAMP (www.cuilab.cn/). J ALDOA expression in CCl4-induced liver fibrosis and normal control from GSE55747. K ALDOA expression in liver cirrhosis and normal control from GSE6764. L, M Correlation analysis of IGF2BP2 expression with ALDOA expression in cirrhotic samples from GSE25097 (n = 40) and GSE15654 (n = 216). N-R Measurement of lactate levels (N), α-SMA expression, and migration capacity (upper of Fig. 5P, scale bar, 50 µm) in LX-2 cells after co-transfection of ALDOA overexpression vector (OE-ALDOA) or control vector (Vector) in IGF2BP2 KD (shIGF2BP2) and control (shNC) cells. α-SMA expression was measured using immunoblotting (O) and immunofluorescence (bottom of Fig. 5P, scale bar, 20 µm). There are bar graphs showing the migration capacity (Q) and the fluorescence intensity of α-SMA expression (R) in LX-2 cells. n.s. not significant; *P < 0.05, **P < 0.01, ***P < 0.001, ****P < 0.0001.
To gain a deeper understanding of the downstream targets of IGF2BP2, we conducted a RIP assay. The results of this assay revealed a notable increase in the expression of ALDOA following incubation with the IGF2BP2 antibody, as compared to the IgG control group. Furthermore, the enrichment of ALDOA was found to be compromised upon knockdown of IGF2BP2 (Fig. 5E). Likewise, the enrichment of ALDOA was achieved through incubation with the m6A antibody (Fig. 5F). Importantly, RNA stability assays revealed that the half-life of ALDOA RNA was shortened in cells with IGF2BP2 KD after 4 h of actinomycin D treatment (Fig. 5G). According to the findings from POSTAR3 (http://postar.ncrnalab.org), it was predicted that there are significant interactions between IGF2BP2 and ALDOA (Fig. 5H). High-confidence m6A modification sites on ALDOA predicted from SRAMP (www.cuilab.cn/) (Fig. 5I). These findings collectively present compelling evidence supporting the direct binding and regulatory role of IGF2BP2 on ALDOA.
Enhanced ALDOA expression rescues IGF2BP2 KD-mediated inhibition of LX-2 cells activation
To further clarify the biological function of ALDOA in liver fibrosis, an analysis of the GSE55747 dataset revealed a notable upregulation of ALDOA expression in fibrotic liver tissues (Fig. 5J). Similarly, ALDOA expression was significantly increased in the livers of cirrhotic patients, according to the GSE6764 dataset (Fig. 5K). Further correlation pattern analysis in cirrhotic samples confirmed that IGF2BP2 expression was positively linear with ALDOA in the GSE25097 (p = 2.7e-6, r = 0.67) and GSE15654 (p = 4.4e-3, r = 0.19) datasets (Fig. 5L, M).
To further determine the biological function of IGF2BP2 in driving HSCs activation through the regulation of ALDOA expression, we performed rescue experiments by enhancing ALDOA expression in IGF2BP2 KD LX-2 cells. As expected, enhanced ALDOA expression effectively counteracted the inhibitory effects of IGF2BP2 KD on LX-2 cell migration and the reduction of α-SMA expression., which are considered to be phenotypes of activated HSCs (Fig. 5O–R). In addition, enhanced ALDOA expression reversed the IGF2BP2 KD-mediated decrease in lactate levels (Fig. 5N). Overall, our data reveal that ALDOA is a functionally critical target of IGF2BP2. The regulation of ALDOA expression by IGF2BP2 contributes to the overall biological function of IGF2BP2 in glycolytic metabolism and the activation of HSCs.
Histone lactylation is essential in HSCs activation
Our data indicate that activated HSCs exhibit active glycolysis and lead to the accumulation of lactate, which is a substrate for histone lactylation. Next, we investigated the level of histone lactylation in liver fibrosis and its role in the pathogenesis of liver fibrosis. Immunofluorescence revealed a notable increase in the global lactylation level within liver fibrosis tissues induced by CCl4 in mice, in comparison to healthy liver tissues (Fig. 6A). There was an observed elevation in the global lactylation and H3K18la levels following a 24 h treatment of LX-2 cells with 1 ng/mL TGF-β1, especially the increase in H3K18la, which was more significant (Fig. 6B). Importantly, IGF2BP2 further affects histone lactylation by regulating lactate production, and our results observed both global lactylation and H3K18la levels were reduced in cells with IGF2BP2 KD (Fig. 6C). These data support the idea that activated HSCs are characterized by elevated levels of lactylation, which may be involved in the activation of HSCs and the pathogenesis of liver fibrosis.
A Global lactylation levels in liver sections from CCl4-induced liver fibrosis mice and healthy mice were visualized by immunofluorescence (scale bar, 100 µm). B Immunoblotting showing global lactylation and H3K18la levels after TGF-β1-induced LX-2 cells for different times (0, 6, 12, 24 h). C Immunoblotting shows global lactylation and H3K18la levels in LX-2 cells with IGF2BP2 KD. D Immunoblotting shows global lactylation and H3K18la levels in LX-2 cells treated with different concentrations of lactate, 2-DG, or rotenone for 24 h. Representative images (E) and bar graphs (F) showing lipid droplets, migration capacity, cell proliferation, and α-SMA expression after treatment of LX-2 cells with TGF-β1, 2-DG, or lactate, as detected by oil red O staining, cell migration assays, EdU cell proliferation assays, and immunofluorescence, respectively. G Immunoblotting showed expression of α-SMA at 10 mmol/L exogenous lactate supplementation for different times (6 h, 12 h, 24 h). H qRT-PCR verified the expression of ACTA2 at 1 h of 2-DG, lactate treatment. Representative images (upper of I, scale bar, 50 µm) and bar plot (J) showing cell migration in LX-2 cells silenced for LDHA and LDHB. Representative images showing α-SMA expression (bottom of Fig. 6I, scale bar, 20 µm) in LX-2 cells silenced for LDHA and LDHB. K Immunoblotting shows α-SMA expression in LX-2 cells silenced for LDHA and LDHB. n.s. not significant; *P < 0.05, **P < 0.01, ****P < 0.0001.
To assess whether histone lactylation functions in LX-2 activation, we used several compounds to alter the global intracellular lactylation levels. Obviously, 10 mmol/L exogenous lactate supplementation significantly enhanced global lactylation and H3K18la levels (Fig. 6D). 2-deoxy-D-glucose (2-DG), a recognized inhibitor of glycolysis, was observed to inhibit global lactylation levels (Fig. 6D). Rotenone, an inhibitor of mitochondrial respiratory chain complex I, increases global lactylation and H3K18la levels in cells (Fig. 6D). Here, we performed oil red O staining, cell migration assays, and EdU cell proliferation assays to assess the effect of altered lactylation levels on LX-2 cell activation. Next, we observed that inhibition of histone lactylation using 2-DG effectively enhanced the production of intracellular lipid droplets in LX-2 cells. Additionally, it impeded the migration and proliferation of LX-2 cells (Fig. 6E, F).
In order to further investigate the correlation between histone lactylation and the activation of HSCs, exogenous lactate supplementation was employed. The findings of our study indicate a noteworthy decrease in lipid droplets and an elevation in cell migration in LX-2 cells following the augmentation of histone lactylation through the treatment of lactate. However, no substantial variance in LX-2 cell proliferation was observed when lactate was utilized, potentially attributable to the robust proliferation of LX-2 cells cultured in vitro (Fig. 6E, F). Furthermore, the application of lactate was found to augment the expression of α-SMA, as demonstrated by immunofluorescence analysis (Fig. 6E, F). Furthermore, lactate supplementation activated α-SMA expression, as further confirmed by immunoblotting and qRT-PCR (Fig. 6G, H). Conversely, the application of 2-DG led to a reduction in α-SMA expression (Fig. 6H).
Inhibition of lactate dehydrogenase (LDH) has been reported to be sufficient to reduce global lactylation levels [10, 11, 33]. In order to further validate the association between lactylation and the activation of HSCs, we proceeded to silence LDHA and LDHB. As expected, our results indicate that the combined silencing of LDHA and LDHB triggered a significant inhibition of LX-2 cell migration and α-SMA expression (Fig. 6I–K). Interestingly, supplementation of exogenous lactate to cells co-silenced by LDHA and LDHB restored cell migration and α-SMA expression (Fig. 6I–K). Taken together, these results emphasize the essential role of histone lactylation in HSCs activation.
Inhibition of histone lactylation ameliorates liver fibrosis in vivo
Considering that the use of 2-DG inhibited global lactylation levels and HSCs activation in vitro, next, we aimed to assess the alleviation of liver fibrosis by intraperitoneal injection of 2-DG (Fig. 7A). Significantly, 2-DG attenuated serum lactate levels in mice with CCl4-induced liver fibrosis (Fig. 7B). In addition, our results showed reduced areas of collagen deposition and attenuated liver injury in the livers of 2-DG-treated mice, as evidenced by H&E staining, Masson’s trichrome staining, and sirius red staining (Fig. 7C–E). Our immunofluorescence results showed that treatment with 2-DG effectively inhibited α-SMA expression in the mouse liver (Fig. 7F, G). Furthermore, analysis of ALT and AST levels indicated that treatment with 2-DG resulted in the restoration of liver function in liver fibrosis mice (Fig. 7H, I). In conclusion, these data collectively suggest that the blockade of lactylation alleviates liver fibrosis.
A Schematic illustration of the experimental design of 2-DG (1000 mg/kg) for the treatment of CCl4-induced liver fibrosis in mice. B Lactate levels in the serum of mice treated according to (A) (n = 6). Representative images (C) and bar plot (D, E) of H&E staining (upper), Masson’s trichrome staining (middle), and sirius red staining (bottom) in mouse liver sections treated according to (A) (n = 6, scale bar, 100 µm). Representative images (F) and bar plot (G) of α-SMA expression (upper, n = 3, scale bar, 100 µm) visualized by immunofluorescence in mouse liver sections treated according to (A). Serum levels of ALT (H) and AST (I) in mice treated according to (A). **P < 0.01, ***P < 0.001, ****P < 0.0001.
Discussion
Liver fibrosis is reversible after the removal of the causative agent. Although promising progress has been made in the study of the mechanisms of liver fibrosis onset and reversal over the past decades, the understanding of some of the mechanisms is not yet fully clear. Currently, the role of m6A in the pathogenesis of liver fibrosis is being revealed [34]. This work shows that IGF2BP2, a newly identified m6A reader, is upregulated in liver fibrosis and activated HSCs. We show here that the use of RNA infection and small-molecule compound inhibition of IGF2BP2 could block HSCs activation in vitro. Notably, mice lacking IGF2BP2 were protected from liver fibrosis in vivo. These data further extend the evidence that the involvement of m6A is essential for liver fibrosis and that m6A provides new insights into the understanding of the molecular mechanisms of liver fibrosis and may represent a new therapeutic approach.
Although there may be some differences in the pathology and molecular mechanisms of liver fibrosis caused by multiple etiologies, we need to be cautious when using CCl4-induced liver fibrosis models to extrapolate or explain the true state of liver fibrosis in humans. However, recent studies have shown that IGF2BP2−/− mice exhibit resistance to diet-induced obesity and fatty liver [19]. In addition, it has been shown that inhibition of IGF2BP2 protects against diet-induced hepatic steatosis [20]. Another study showed that IGF2BP2 knockdown effectively inhibited CCl4-induced liver fibrosis, which is consistent with our data [21]. Although it represents potential, however, the suitability of IGF2BP2 as a therapeutic target for different etiologies of liver fibrosis requires further validation.
Innovatively, this work reveals a novel regulatory pathway for IGF2BP2 in HSCs. Our results suggest that IGF2BP2 enhances the expression of ALDOA, a key target in the glycolytic pathway. We observed that inhibition of IGF2BP2 impaired lactate production in LX-2 cells, and enhanced ALDOA expression rescued the IGF2BP2-mediated reduction in lactate production. Importantly, enhanced Aldoa expression rescued the IGF2BP2 KD-mediated inhibition of LX-2 cell activation. It has been reported that glycolysis predisposes HSCs to activation, as evidenced by cell migration and extracellular matrix deposition [7]. From a biogenesis point of view, glycolysis provides a continuous energy supply for the activation of HSCs to accommodate the energy requirements for HSCs proliferation and differentiation [35]. Accumulating evidence suggests that interfering with glycolysis in HSCs can effectively restore their quiescent phenotype and has been shown to be a promising therapeutic target for anti-liver fibrosis [8, 36,37,38]. An outstanding issue, however, is that dysregulation of multiple glycolytic genes, including pyruvate kinase M2 (PKM2) [39], hexokinase 2 (HK2) [33], and fructose-2,6-bisphosphatase-3 (PFKFB3) [7], has been identified in liver fibrosis, which complicates understanding the relationship between liver fibrosis and glycolysis. It is unclear whether IGF2BP2-mediated glycolytic metabolism plays a central role in the process of liver fibrosis or is the result of joint involvement with other glycolytic genes.
Activated HSCs exhibit active glycolysis, producing large amounts of lactate as a substrate for histone lactylation. The role of histone lactylation in the mechanism of liver fibrosis remains to be elucidated. Here, we found increased levels of global lactylation in the livers of mice with CCl4-induced liver fibrosis, and increased levels of global lactylation and H3K18la were observed in TGF-β1-treated LX-2 cells. Importantly, correction of aberrant lactylation or exogenous supplementation of lactate was observed to alter the activation phenotype of LX-2 cells, as expected. A recent study showed an enrichment of H3K18la in activated HSCs. Interestingly, interfering with lactate production reduced H3K18la levels and inactivated HSCs [33]. These results are consistent with our data, although different cell types were used. Lactylation sites on different lysine residues in core histones have also been identified. A recent study has shown that H4K12la is enriched at the promoters of glycolytic genes and enhances glycolytic activity by promoting the transcription of glycolytic genes. This positive feedback regulation exacerbates microglia dysfunction in Alzheimer’s disease [40]. In addition, multiple lactylation sites have been identified on non-histone proteins as well, suggesting that lactylation is involved in a wider range of biological functions than just transcriptional regulation [41, 42]. The role of these lactylations identified at different sites of core histones as well as non-histone lactylation in the activation of HSCs and liver fibrosis deserves further investigation.
The present study has several limitations. First, despite sufficient in vitro investigations, it is imperative to employ an in vivo methodology that specifically focuses on haematopoietic stem cells, an aspect that was absent in our research. Furthermore, the AAV8 vector demonstrates a tropism for hepatocytes, and our investigators have noted favorable outcomes with its utilization. Nevertheless, the mechanism by which IGF2BP2 operates via hepatocytes necessitates further elucidation. Another limitation is that, despite validating the direct interaction of IGF2BP2 with ALDOA, further testing is needed to see if IGF2BP2 binds to the m6A site on ALDOA via KH1-KH4 domains, which would further deepen our understanding of the regulatory mechanism of IGF2BP2. In addition, lactate produced by activated HSCs may affect liver fibrosis through multiple links, and it would be interesting to explore the regulation of the hepatic inflammatory response by lactate as well as lactate-mediated crosstalk of HSCs with other cell types, such as hepatocytes, kupffer cells, and endothelial cells.
In conclusion, our study reveals the essential role of IGF2BP2 as an m6A-binding protein in the pathogenesis of liver fibrosis through the regulation of glycolytic metabolism and extends the potential role of lactylation in the activation of HSCs and liver fibrosis (Fig. 8). Importantly, our study highlights that targeting IGF2BP2 could be an effective strategy for anti-liver fibrosis therapy.
IGF2BP2 is highly activated in fibrotic livers of mice. Mechanistically, IGF2BP2 enhances the stability of the m6A-modified transcript ALDOA in the glycolytic metabolic pathway, which is crucial for HSCs activation. In addition, lactate produced by activated HSCs via the glycolytic pathway serves as a substrate for lactylation, which plays an essential role in the activation of HSCs. Created with BioRender.com.
Materials and methods
Human samples
Human samples and data were acquired from the First Hospital of Lanzhou University. Liver samples were procured from unaffected tissue adjacent to surgically removed hepatic hemangiomas, as well as from sclerotic tissue adjacent to hepatocellular carcinoma (HCC). Serum samples were obtained from both healthy individuals and patients diagnosed with cirrhosis. All participants provided informed consent to partake in this investigation. The research protocol was granted ethical approval by the Ethics Committee of the First Hospital of Lanzhou University (LDYYLL2023-333).
Animal experiments
Male C57BL/6 mice, aged 7 weeks and weighing between 18–22 g, were obtained from Gempharmatech Co., Ltd. in Chengdu, China. The mice were housed in a specific pathogen-free facility with controlled ventilation and a 12-h light/dark cycle. All animal procedures were conducted in compliance with the Regulations on the Management of Laboratory Animals and were approved by the Ethics Committee of the First Hospital of Lanzhou University (LDYYLL2023-333).
The liver fibrosis model induced by CCl4 was implemented according to the previously described method [43]. In summary, mice were administered sterile CCl4 (25% v/v dissolved in olive oil, 1 mL/kg) via intraperitoneal injection twice a week for a duration of 6 weeks. After a 48-h period following the final injection, the mice were euthanized in order to collect serum and liver tissue for subsequent analysis.
In order to investigate the impact of IGF2BP2 deficiency on the mitigation of liver fibrosis, a series of treatments were administered to mice. Following a one-week period of acclimatization to their new surroundings, the mice were assigned to different groups of 6 mice each using blinding and randomization methods. These groups included a control group treated with non-specific shRNA known as AAV-NC, and a group treated with shRNA specifically targeting murine IGF2BP2, referred to as AAV-shRNA. The shRNA used in the study was developed by OBiO Technology (Shanghai, China). The sequences of mouse AAV-shRNA and AAV-NC were cloned into the pAAV-TBG-mcherry-3xFLAG vector for further packaging. AAV serotype 8 was further selected to construct AAV8. Purified AAV8 was diluted in sterile phosphate buffer saline (PBS) and delivered to the mice by tail vein injection. Following the AAV8 injection, the mice were subjected to CCl4 treatment after a period of 2 weeks. The specific AAV sequences and vector genomes (vg) that were introduced into mouse can be found in Table S1.
To verify the effect of inhibiting histone lactylation on alleviating liver fibrosis, a study was conducted on mice. Mice were injected with olive oil or CCl4 twice a week for 6 weeks. During the injection of CCl4, 2-DG (1000 mg/kg, TagerMol) was injected intraperitoneally every 3 days. Mice were sacrificed 48 h after the last injection.
Histological analysis and serum biochemistry
Liver tissues that had been fixed with 4% paraformaldehyde and embedded in paraffin were subjected to deparaffinization in order to carry out staining procedures such as H&E staining, Masson’s trichrome staining, and sirius red staining. ImageJ was performed to analyze the stained area of liver tissue sections after Masson’s trichrome staining and sirius red staining. The levels of ALT and AST in the serum were determined using the instructions provided by the manufacturer (Nanjing Jiancheng Bioengineering Institute, Nanjing, China).
Cell culture
The LX-2 cells were cryopreserved in the laboratory and authenticated using short tandem repeat analysis. The cells were cultured in DMEM (Gibco, USA) supplemented with 2% (v/v) FBS (HyClone, USA). The cells were maintained in a controlled environment at 37 °C with 5% CO2. Additionally, the cells were regularly screened for mycoplasma contamination.
Cell transfection
To knockdown IGF2BP2 in LX-2 cells, either a non-specific shRNA (referred to as shNC) or a gene-specific shRNA was introduced into the cells using the recommended protocol provided by the manufacturer (Genechem, Shanghai, China). This transfection was performed when the cells reached a confluency of 40–50%. Following transfection, stable cell lines were established by subjecting the cells to puromycin screening at a concentration of 2 µg/mL.
In order to disrupt the expression of LDHA and LDHB genes in LX-2 cells, small interfering RNAs (siRNAs) were designed and synthesized by GenePharma (Shanghai, China). Gene-specific siRNA and a scrambled negative control siRNA were introduced into LX-2 cells through transfection using GP-transfect-Mate, a transfection reagent provided by GenePharma, following the guidelines provided by the manufacturer. After a transfection period of 12 h, fresh growth media was supplemented, and the cells were harvested 48 h later.
To enhance the expression of ALDOA, LX-2 cells were subjected to transfection with ALDOA overexpression and negative control vectors using E-trans as per the instructions provided by the manufacturer (Genechem, Shanghai). The cells were cultured until they reached a confluency of 70–80%. The E-trans-DNA mixture (consisting of 1 μg vector, 3 µL E-trans, and 100 µL serum-free DMEM) was prepared for each well, followed by a 10 min incubation at room temperature. Subsequently, the mixture was transferred to the corresponding 12-well plates. After an incubation period of 48 h, the cells were collected for further analysis.
The sequences of all RNA interference products are presented in Table S2.
ELISA
Serum IGF2BP2 levels were quantified in patients with cirrhosis (n = 46) and healthy individuals (n = 24) using ELISA kits obtained from CUSABIO (Wuhan, China). The ROC curves were generated utilizing the OmicStudio tools (https://www.omicstudio.cn/tool/58).
Lactate level assays
The lactate concentration in the medium was assessed following the protocol provided by the l-lactic acid (LA) Colorimetric Assay Kit (Elabscience, Wuhan, China). LX-2 cells were cultured for 48 h, and the supernatants were collected and diluted with PBS. A 5 µL aliquot of the diluted sample was taken for each well, followed by the addition of 100 µL of enzyme working solution and 20 µL of chromogenic agent. The mixture was then incubated at 37 °C for 10 min. A stop solution was added to each well, and the absorbance was measured at 530 nm using a full-wavelength microplate reader. To account for variations in cell number, the lactate content was normalized using a cell counter (Nexcelom Bioscience, USA). A similar procedure was employed to determine lactate levels in serum.
ATP assay and glucose assay
The ATP levels were measured using the ATP assay kit (Beyotime, China; Cat # S0026). The cells were lysed and the supernatant was collected after centrifugation at 12,000 g for 5 min. The ATP assay working solution (100 µL) was added to the assay wells and incubated at RT for 3 min to deplete background ATP. The supernatant (20 µL) was then added and chemiluminescence was detected using a microplate reader (BioTek, USA). The protein concentrations of the samples were determined using the bicinchoninic acid (BCA) method. The glucose assay was performed following the instructions of the kit (Beyotime, China; Cat # S0201S), and the glucose level was calculated using the standard curve.
Cell migration assays
The cell migration assay was conducted following the established protocol [44]. A total of five random fields of view were chosen for the purpose of capturing photographs and migrated cell analysis. The area or number of migrated cells was analyzed using ImageJ.
Oil red O staining
Oil red O staining was conducted using a modified oil red O staining Kit (Solarbio, China; Cat # G1263). To begin, cells were fixed with 4% paraformaldehyde and then covered with oil red O buffer for a duration of 5 min. Subsequently, the cells were stained at RT for 15 min by adding the oil red O staining solution. Following this, the cells were treated with oil red O differentiation solution and stained with drops of mayer hematoxylin solution. After thorough washing, the stained fat droplets within the cells were observed and photographed using a light microscope. Positively stained areas were analyzed using ImageJ and normalized by controls.
EdU cell proliferation assays
To evaluate cell proliferation, the BeyoClick™ EdU Cell Proliferation Kit (Beyotime, China; Cat # C0075S) was employed. The cells were subjected to incubation at 37 °C for 30 min with a pre-warmed EdU working solution (10 M). Following EdU labeling, the cells were fixed with 4% paraformaldehyde for 15 min. Subsequently, the cells were washed three times with PBS containing 3% BSA and permeabilized with enhanced permeabilization buffer (Beyotime, Cat # P0097) for 15 min, followed by another round of three washes. Each well was then incubated in the dark at RT for 30 min with the click reaction solution, washed, and finally stained with Hoechst 33342 for nuclear visualization. Fluorescence microscopy was employed to capture images.
Immunofluorescence
As described previously, immunofluorescence was performed on cells [45]. In brief, the cells were fixed and blocked, followed by incubation with an anti-α-SMA antibody (1:200, Signalway Antibody, USA; Cat # 40482-1) and a FITC-conjugated fluorescent secondary antibody (1:200, Proteintech, China; Cat # SA00003-1). The stained cells were then mounted with a 4′,6-diamidino-2-phenylindole (DAPI)-containing antifluorescent attenuation blocker and observed under a fluorescence microscope (Olympus IX73, Japan). Multiple random fields of view were selected and analyzed for quantification of fluorescence using ImageJ. For tissue immunofluorescence, the sections were deparaffinized and rehydrated, and the remaining steps were identical to those for cell immunofluorescence.
RNA isolation and qRT-PCR
RNA extraction and qRT-PCR procedures were conducted following the methods described in a previous study [46]. β-actin was utilized as an internal control for normalization. The specific primer sequences used in the qRT-PCR analysis can be found in Table S3.
RNA-seq and data analysis
Three samples each of LX-2 cells with or without IGF2BP2 KD were collected, and total RNA was extracted using RNAiso Plus (Takara). The library was constructed, and PCR amplification was used for library fragment enrichment. The library was then subjected to quality control using the Agilent 2100 Bioanalyzer. Sequencing of the library was performed using the HiSeq 2500 System (Illumina, USA), with sequencing services provided by oebiotech (Shanghai, China). DEGs between groups were analyzed using the DEG-seq package of R software. GO and KEGG enrichment analysis of DEGs was performed using the GO database and the KEGG database and visualized by the oebiotech tool (https://cloud.oebiotech.cn/task/).
RIP assay
The RIP assay was performed utilizing the RIP kit (BersinBio, Guangzhou, China). In brief, a total of 2 × 107 LX-2 cells were collected and lysed. Following the removal of DNA, the lysate was incubated with RIP buffer containing anti-IGF2BP2 antibody (3 µg, Proteintech; Cat # 11601-1-AP) and normal rabbit control IgG (3 µg, Bioss Antibodies; Cat # bs-0295PC) at 4 °C for 16 h. Subsequently, RNA-protein complexes were incubated with protein A/G magnetic beads that had been equilibrated. After the elution of RNA, the immunoprecipitated RNA was extracted, and the qRT-PCR program was executed.
RNA stability assays
LX-2 cells were subjected to treatment with actinomycin D (HY-17559, MedChemExpress) at a concentration of 5 µg/mL. Subsequently, an equal number of cells (1 × 106) were harvested at specified time intervals (0, 2, and 4 h) using a cell counter. Following this, total RNA was extracted and subjected to qRT-PCR analysis after reverse transcription.
Immunoblotting
Immunoblotting was conducted following the previously established protocol [47]. An internal control was employed using either an anti-β-actin antibody, anti-Histone-H3 antibody or an anti-GAPDH antibody. The primary antibodies utilized for immunoblotting are listed in Table S4.
Statistical analyses
In the present investigation, the statistical analysis of the data was conducted using SPSS 22.0 (SPSS Inc.) and GraphPad Prism 9 (GraphPad, USA) software. Pearson correlation analysis and Spearman correlation analysis were employed to ascertain the correlation between the expression of the metrics included in the cirrhosis datasets and mice with liver fibrosis, respectively. Group comparisons of continuous variables, which were presented as mean ± standard deviation, were performed using either a two-tailed student’s t-test or one-way ANOVA. p < 0.05 was considered indicative of a statistically significant.
Data availability
The datasets presented in this study are available in online repositories. Raw RNA sequencing data available upon reasonable request.
References
Hammerich L, Tacke F. Hepatic inflammatory responses in liver fibrosis. Nat Rev Gastroenterol Hepatol 2023;20:633–46.
Sun M, Kisseleva T. Reversibility of liver fibrosis. Clin Res Hepatol Gastroenterol. 2015;39:S60–3.
Kisseleva T, Brenner D. Molecular and cellular mechanisms of liver fibrosis and its regression. Nat Rev Gastroenterol Hepatol 2021;18:151–66.
Trivedi P, Wang S, Friedman SL. The power of plasticity-metabolic regulation of hepatic stellate cells. Cell Metab. 2021;33:242–57.
Chang ML, Yang SS. Metabolic signature of hepatic fibrosis: from individual pathways to systems biology. Cells. 2019;8:1423.
Wang F, Jia Y, Li M, Wang L, Shao J, Guo Q, et al. Blockade of glycolysis-dependent contraction by oroxylin a via inhibition of lactate dehydrogenase-a in hepatic stellate cells. Cell Commun Signal. 2019;17:11.
Mejias M, Gallego J, Naranjo-Suarez S, Ramirez M, Pell N, Manzano A, et al. CPEB4 increases expression of PFKFB3 to induce glycolysis and activate mouse and human hepatic stellate cells, promoting liver fibrosis. Gastroenterology. 2020;159:273–88.
Chen Y, Choi SS, Michelotti GA, Chan IS, Swiderska-Syn M, Karaca GF, et al. Hedgehog controls hepatic stellate cell fate by regulating metabolism. Gastroenterology. 2012;143:1319–29.e11.
Xie Y, Hu H, Liu M, Zhou T, Cheng X, Huang W, et al. The role and mechanism of histone lactylation in health and diseases. Front Genet. 2022;13:949252.
Zhang D, Tang Z, Huang H, Zhou G, Cui C, Weng Y, et al. Metabolic regulation of gene expression by histone lactylation. Nature. 2019;574:575–80.
Yu J, Chai P, Xie M, Ge S, Ruan J, Fan X, et al. Histone lactylation drives oncogenesis by facilitating m6A reader protein YTHDF2 expression in ocular melanoma. Genome Biol. 2021;22:85.
Xiong J, He J, Zhu J, Pan J, Liao W, Ye H, et al. Lactylation-driven METTL3-mediated RNA m6A modification promotes immunosuppression of tumor-infiltrating myeloid cells. Mol Cell. 2022;82:1660–77.e10.
Gu J, Zhou J, Chen Q, Xu X, Gao J, Li X, et al. Tumor metabolite lactate promotes tumorigenesis by modulating MOESIN lactylation and enhancing TGF-β signaling in regulatory T cells. Cell Rep. 2022;39:110986.
Yang K, Fan M, Wang X, Xu J, Wang Y, Tu F, et al. Lactate promotes macrophage HMGB1 lactylation, acetylation, and exosomal release in polymicrobial sepsis. Cell Death Differ. 2022;29:133–46.
Hagihara H, Shoji H, Otabi H, Toyoda A, Katoh K, Namihira M, et al. Protein lactylation induced by neural excitation. Cell Rep. 2021;37:109820.
Nielsen J, Christiansen J, Lykke-Andersen J, Johnsen AH, Wewer UM, Nielsen FC. A family of insulin-like growth factor II mRNA-binding proteins represses translation in late development. Mol Cell Biol. 1999;19:1262–70.
Degrauwe N, Suvà ML, Janiszewska M, Riggi N, Stamenkovic I. IMPs: an RNA-binding protein family that provides a link between stem cell maintenance in normal development and cancer. Genes Dev. 2016;30:2459–74.
Laggai S, Kessler SM, Boettcher S, Lebrun V, Gemperlein K, Lederer E, et al. The IGF2 mRNA binding protein p62/IGF2BP2-2 induces fatty acid elongation as a critical feature of steatosis. J Lipid Res. 2014;55:1087–97.
Dai N, Zhao L, Wrighting D, Krämer D, Majithia A, Wang Y, et al. IGF2BP2/IMP2-deficient mice resist obesity through enhanced translation of Ucp1 mRNA and Other mRNAs encoding mitochondrial proteins. Cell Metab. 2015;21:609–21.
Jiang Y, Peng J, Song J, He J, Jiang M, Wang J, et al. Loss of Hilnc prevents diet-induced hepatic steatosis through binding of IGF2BP2. Nat Metab. 2021;3:1569–84.
Xu Z, He B, Jiang Y, Zhang M, Tian Y, Zhou N, et al. Igf2bp2 knockdown improves CCl4-induced liver fibrosis and TGF-β-activated mouse hepatic stellate cells by regulating Tgfbr1. Int Immunopharmacol. 2022;110:108987.
Czepukojc B, Abuhaliema A, Barghash A, Tierling S, Naß N, Simon Y, et al. IGF2 mRNA binding protein 2 transgenic mice are more prone to develop a ductular reaction and to progress toward cirrhosis. Front Med. 2019;6:179.
Li Y, Zhang Y, Zhang T, Ping X, Wang D, Chen Y, et al. Rna M6 a methylation regulates glycolysis of beige fat and contributes to systemic metabolic homeostasis. Adv Sci. 2023;10:e2300436.
Lu S, Han L, Hu X, Sun T, Xu D, Li Y, et al. N6-methyladenosine reader IMP2 stabilizes the ZFAS1/OLA1 axis and activates the Warburg effect: implication in colorectal cancer. J Hematol Oncol. 2021;14:188.
Weng H, Huang F, Yu Z, Chen Z, Prince E, Kang Y, et al. The m6A reader IGF2BP2 regulates glutamine metabolism and represents a therapeutic target in acute myeloid leukemia. Cancer Cell. 2022;40:1566–82.e10.
Xu L, Hui AY, Albanis E, Arthur MJ, O’Byrne SM, Blaner WS, et al. Human hepatic stellate cell lines, LX-1 and LX-2: new tools for analysis of hepatic fibrosis. Gut. 2005;54:142–51.
Fondevila MF, Fernandez U, Heras V, Parracho T, Gonzalez-Rellan MJ, Novoa E, et al. Inhibition of carnitine palmitoyltransferase 1A in hepatic stellate cells protects against fibrosis. J Hepatol. 2022;77:15–28.
Khomich O, Ivanov AV, Bartosch B. Metabolic hallmarks of hepatic stellate cells in liver fibrosis. Cells. 2019;9:24.
Xie X, Lv H, Liu C, Su X, Yu Z, Song S, et al. HBeAg mediates inflammatory functions of macrophages by TLR2 contributing to hepatic fibrosis. BMC Med. 2021;19:247.
Puche JE, Saiman Y, Friedman SL. Hepatic stellate cells and liver fibrosis. Compr Physiol. 2013;3:1473–92.
Feng P, Chen D, Wang X, Li Y, Li Z, Li B, et al. Inhibition of the m6A reader IGF2BP2 as a strategy against T-cell acute lymphoblastic leukemia. Leukemia. 2022;36:2180–8.
Cao J, Yan W, Ma X, Huang H, Yan H. Insulin-like growth factor 2 mRNA-binding protein 2-a potential link between type 2 diabetes mellitus and cancer. J Clin Endocrinol Metab. 2021;106:2807–18.
Rho H, Terry AR, Chronis C, Hay N. Hexokinase 2-mediated gene expression via histone lactylation is required for hepatic stellate cell activation and liver fibrosis. Cell Metab. 2023;35:1406–23.e8.
Cheng C, Wu Y, Wang X, Xue Q, Huang Y, Liao F, et al. RNA methylations in hepatic fibrosis, a gradually emerging new treatment strategy. Cell Biosci. 2023;13:126.
Zhang Y, Zhang Y, Chen T, Lin Y, Gong J, Xu Q, et al. Caveolin-1 depletion attenuates hepatic fibrosis via promoting SQSTM1-mediated PFKL degradation in HSCs. Free Radic Biol Med. 2023;204:95–107.
Xiang L, Wang X, Jiao Q, Shao Y, Luo R, Zhang J, et al. Selective inhibition of glycolysis in hepatic stellate cells and suppression of liver fibrogenesis with vitamin A-derivative decorated camptothecin micelles. Acta Biomater. 2023;168:497–514.
Bates J, Vijayakumar A, Ghoshal S, Marchand B, Yi S, Kornyeyev D, et al. Acetyl-CoA carboxylase inhibition disrupts metabolic reprogramming during hepatic stellate cell activation. J Hepatol. 2020;73:896–905.
Xu L, Yang TY, Zhou YW, Wu MF, Shen J, Cheng JL, et al. Bmal1 inhibits phenotypic transformation of hepatic stellate cells in liver fibrosis via IDH1/α-KG-mediated glycolysis. Acta Pharmacol Sin. 2022;43:316–29.
Zheng D, Jiang Y, Qu C, Yuan H, Hu K, He L, et al. Pyruvate kinase M2 tetramerization protects against hepatic stellate cell activation and liver fibrosis. Am J Pathol. 2020;190:2267–81.
Pan R-Y, He L, Zhang J, Liu X, Liao Y, Gao J, et al. Positive feedback regulation of microglial glucose metabolism by histone H4 lysine 12 lactylation in Alzheimer’s disease. Cell Metab. 2022;34:634–48.e6.
Yang Z, Yan C, Ma J, Peng P, Ren X, Cai S, et al. Lactylome analysis suggests lactylation-dependent mechanisms of metabolic adaptation in hepatocellular carcinoma. Nat Metab. 2023;5:61–79.
Gao R, Li Y, Xu Z, Zhang F, Xu J, Hu Y, et al. Mitochondrial pyruvate carrier 1 regulates fatty acid synthase lactylation and mediates treatment of nonalcoholic fatty liver disease. Hepatology. 2023;78:1800–15.
Dobie R, Wilson-Kanamori JR, Henderson BEP, Smith JR, Matchett KP, Portman JR, et al. Single-cell transcriptomics uncovers zonation of function in the mesenchyme during liver fibrosis. Cell Rep. 2019;29:1832–47.e8.
Lin Y, Yan M, Bai Z, Xie Y, Ren L, Wei J, et al. Huc-MSC-derived exosomes modified with the targeting peptide of aHSCs for liver fibrosis therapy. J Nanobiotechnol. 2022;20:432.
Zhou Y, Hu J, Liu L, Yan M, Zhang Q, Song X, et al. Gly-tRF enhances LCSC-like properties and promotes HCC cells migration by targeting NDFIP2. Cancer Cell Int. 2021;21:502.
Wei J, Yao J, Yang C, Mao Y, Zhu D, Xie Y, et al. Heterogeneous matrix stiffness regulates the cancer stem-like cell phenotype in hepatocellular carcinoma. J Transl Med. 2022;20:555.
Zhang T, Qu R, Chan S, Lai M, Tong L, Feng F, et al. Discovery of a novel third-generation EGFR inhibitor and identification of a potential combination strategy to overcome resistance. Mol Cancer. 2020;19:90.
Funding
This work was funded by the National Natural Science Foundation of China (82060119), the Natural Science Foundation of Gansu Province (23JRRA0924), and the Lanzhou University First Hospital Fund (ldyyyn2022-36).
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Conceptualization: YZ and XL; Experimental implementation and data collection: YZ, HH, XJ, FZ, YZ and LX; Original manuscript preparation: YZ and LL; Academic contributions, revision and proofreading: JY, LR, JH and XL; Funding acquisition: XL and LL. All authors read and approved the final manuscript.
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Zhou, Y., Yan, J., Huang, H. et al. The m6A reader IGF2BP2 regulates glycolytic metabolism and mediates histone lactylation to enhance hepatic stellate cell activation and liver fibrosis. Cell Death Dis 15, 189 (2024). https://doi.org/10.1038/s41419-024-06509-9
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Accepted:
Published:
DOI: https://doi.org/10.1038/s41419-024-06509-9
