Many mammalian genes are transcribed not only in the forward but also the reverse orientation; yet it is unclear what genetic elements and chromatin features mediate the initiation of such 'divergent' transcription. By mapping genome-wide transcription initiation in HeLa cells using 5′-GRO-seq, Duttke et al. identified multiple divergent promoter pairs that were associated with genes in the forward direction and with non-annotated regions in the reverse direction, and separated by nucleosome free regions (NFRs) of ∼200 bp. In vitro transcription experiments revealed unidirectional transcription from reverse-direction start sites, which was driven by core promoters similar to but not overlapping those driving forward transcription. Importantly, genomic data analyses suggested that about half of HeLa NFR-associated promoters are unidirectional, and thus that divergent transcription is not a ubiquitous feature of mammalian promoters.
References
Duttke, S. H. C. et al. Human promoters are intrinsically directional. Mol. Cell 57, 1–11 (2015)
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Zlotorynski, E. Unidirectional human promoters. Nat Rev Mol Cell Biol 16, 127 (2015). https://doi.org/10.1038/nrm3959
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DOI: https://doi.org/10.1038/nrm3959