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The impact of microwave synthesis on drug discovery

Key Points

  • Lead compound optimization and medicinal chemistry are known to be the bottlenecks in the drug discovery process, and so a need arises for technologies that allow more rapid synthesis of chemical substances. One such high-speed technology is microwave-assisted organic synthesis (MAOS).

  • Microwave heating, compared with conventional heating (which means heating with an external source such as an oil-bath) is much more efficient because the reaction mixture is heated internally by direct coupling of microwave energy with polar molecules (solvents, reagents and catalysts, for example). This allows faster heating to higher temperatures using sealed-vessel technology.

  • This enabling technology has gained significant influence in the lead optimization and lead generation processes in the pharmaceutical industry because microwave heating dramatically reduces reaction times from days or hours to minutes or seconds.

  • Many reaction parameters, such as time, temperature, solvents, concentration or catalysts, can now be evaluated in a fraction of the time, compared with conventional heating, in the optimization step.

  • Compound libraries can be rapidly synthesized either in a parallel or sequential automated format for lead discovery or structure–activity studies.

  • MAOS can also be combined with solid- or fluorous-phase synthesis or solid-supported solution-phase synthesis, respectively, to achieve simpler product isolation and purification.

  • Several examples for high-throughput microwave synthesis using parallel or sequential library production as well as lead optimization and generation studies are covered in this review.

Abstract

In the past few years, using microwave energy to heat and drive chemical reactions has become increasingly popular in the medicinal chemistry community. First described 20 years ago, this non-classical heating method has matured from a laboratory curiosity to an established technique that is heavily used in academia and industry. One of the many advantages of using rapid 'microwave flash heating' for chemical synthesis is the dramatic reduction in reaction times — from days and hours to minutes and seconds. As will be discussed here, there are good reasons why many pharmaceutical companies are incorporating microwave chemistry into their drug discovery efforts.

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Figure 1: Differences between conventional and microwave heating, and examples of microwave reactor technology.
Figure 2: Dihydropyrimidine library synthesis and reaction optimization using automated sequential microwave synthesis.
Figure 3: Time savings associated with microwave-assisted library synthesis.
Figure 4: Lead generation and optimization of allosteric AKT kinase inhibitors derived from a 2,3-diphenyl-quinoxaline core.
Figure 5: Lead optimization of the malarial proteases plasmepsin I and II inhibitors.
Figure 6: Use of microwave heating in medicinal chemistry.
Figure 7: Integrating microwave heating with other technologies.

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Acknowledgements

The work of the Kappe research laboratories in the area of microwave chemistry has been supported by the Austrian Science Fund, the 'Jubiläumsfonds der Österreichischen Nationalbank', the European Union COST program, the Austrian Academic Exchange Service, the University of Graz and various industrial contributors. We wish to thank all members of the Microwave Synthesis (MAOS) Lab in Graz for their essential contributions to microwave chemistry.

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Glossary

Combinatorial chemistry

The generation of large collections, or 'libraries', of compounds by synthesizing all possible combinations of a set of smaller chemical structures.

Compound libraries

Large collections of compounds (hundreds to millions), often synthesized through reactions performed simultaneously (in parallel) or by using combinatorial chemistry principles.

Chemical space

The space spanned by all possible (energetically stable) combinations of atoms and topologies in molecules.

Microwave irradiation

Electromagnetic irradiation in the frequency range of 0.3–300 GHz, corresponding to wavelengths of 1 cm–1 m. All microwave reactors for chemical synthesis operate at a frequency of 2.45 GHz (corresponding to a wavelength of 12.25 cm) to avoid interference with telecommunication and cellular phone frequencies.

Arrhenius law

The relationship between reaction rate and temperature. The rate of a chemical reaction increases when the temperature is raised according to: k = A exp(−Ea/RT).

Microtitre plates

Sample holders used for synthesis, storage, analysis and screening of compound libraries. The plates typically have 6, 24, 96, 384 or even 1,536 sample wells arranged in a 2:3 rectangular matrix.

Design of experiment

(DoE). The use of factorial experiments instead of the one-factor-at-a-time method for the optimization of reaction conditions. This allows studying the effect of each factor on the response variable, while requiring fewer observations than by conducting separate experiments for each factor independently.

Dielectric properties

The ability of a specific sub-stance to convert electro-magnetic energy into heat at a given frequency and temp-erature is determined by the 'loss tangent', tan δ. A reaction medium with a high (>0.5) tan δ value is required for efficient absorption and rapid heating.

Diversity-oriented synthesis

(DOS). Efficient synthesis of a collection (combinatorial library) of structurally diverse and complex small molecules that differ in stereochemistry, functional groups and molecular framework. Rather than being directed toward a single biological target, DOS libraries can be used to identify new ligands for a variety of targets.

Microreactor

Continuous-flow device that consists of a series of interconnecting channels (50–500 μm diameter) and facilitates the performance of chemical reactions on a micro-litre scale. Independent reactants are brought together through different feeder channels to the main channel, where they mix and react as they travel to a reservoir where the products are collected.

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Kappe, C., Dallinger, D. The impact of microwave synthesis on drug discovery. Nat Rev Drug Discov 5, 51–63 (2006). https://doi.org/10.1038/nrd1926

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