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Photoreactive helical nanoaggregates exhibiting morphology transition on thermal reconstruction

  • Nature Communications 6, Article number: 8936 (2015)
  • doi:10.1038/ncomms9936
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The supramolecular design of photochromic molecules has produced various smart molecular assemblies that can switch their structures and/or functions in response to light stimuli. However, most of these assemblies require large structural changes of the photochromic molecules for an efficient conversion of assembled states, which often suppresses the photoreactivity within the self-assemblies. Here we report molecular assemblies, based on a photo-cross-linkable chromophoric dyad, in which a small amount of ultraviolet-generated photochemical product can guide the entire system into different assembly processes. In apolar solution, the intact dyad self-assembles into right-handed superhelical fibrils. On ultraviolet-irradiation of these fibrils, an effective photoreaction affords a sole photo-cross-linked product. When right-handed helical fibrils, containing a minor amount of the photoproduct, are thermally reconstructed, the intact molecule and the photoproduct undergo a co-assembly process that furnishes superhelical fibrils with different molecular packing structures. This molecular design principle should afford new paradigms for smart molecular assemblies.


Photoreactions of naturally occurring π-conjugated molecular units can have a crucial impact on their intricate dynamic organization processes. For example, DNA bases in the duplex undergo ultraviolet-irradiation-induced photodimerization reactions between base pairs such as thymine and cytosine. Such DNA damage can, even when occurring only on a small scale, lead to severe malfunctions during the duplication and transfer of genetic information1. Although such photoreactions represent unfavourable events for biological systems, they enable the development of complex stimuli-responsive systems when applied in the context of synthetic supramolecular chemistry2.

The last decade has seen great advances in this research field, and well-defined molecular ensembles with complex hierarchy have been built3,4,5,6. However, a sophisticated molecular design that leads to a system with a well-organized thermodynamic nanostructure is not enough; for the further advancement of this research area, methodologies that enable the system to switch between different nanostructures by means of external stimuli are of equal importance7,8,9. A commonly encountered design strategy for the generation of stimuli-responsive molecular assemblies is the use of photochromic molecular building blocks such as azobenzenes and diarylethenes10,11,12. Subsequent photochromic reactions of these assemblies may affect their equilibrium, which can lead to changes in the aggregation state13,14,15,16,17,18,19,20,21,22,23,24,25, or to the generation of monomers26,27,28,29. To change the assembled supramolecular structures of such systems involving photochromic reactions, the majority of previously reported studies has focused on photochromic molecules with relatively large structural changes. However, photochromic reactions accompanied by large changes in molecular shape, often exhibit a suppression of photoreactivity within self-assembled nanostructures30,31. Here we report an unprecedented type of complex photoresponsive supramolecular system, wherein even minor amounts of a generated photoproduct in a self-assembled nanostructure changes the self-assembly mechanism of the intact molecules completely through the reorganization process, thus leading ultimately to distinct self-assembled nanostructures.


Molecular design

Recently, we reported a unique molecular assembly system, based on a chiral azobenzene dyad, in which the two photochromic units are linked by a xylylene32. This dyad exhibited a remarkable hierarchical assembly process in the nonpolar solvent methylcyclohexane (MCH). An examination of its circular dichroism (CD) behaviour suggested that intramolecular π−π stacking between two azobenzene chromophores results in a folded and thus chiral conformation of this dyad. The folded molecules further aggregated with a homogeneous curvature, which lead to the formation of uniform annular nanostructures (nanorings) at 293 K. On cooling the solution to 273 K, the annular nanostructures stacked on top of each other to form tubular nanostructures (nanotubes) that grew into chiral superhelical fibrils. In one of our previous studies, we reported that a similar dyad, consisting of two oligo(p-phenylenevinylenes), does not assemble into uniform nanostructures, but results in the formation of irregular nanofibrils and small amounts of nanorings33. We attributed the observed deterioration of the ability to form regular homogeneous aggregates to the very strong propensity of the oligo(p-phenylenevinylene) units to form intramolecular π−π stacks, which should decrease the conformational flexibility of the folded structure and thus hamper subsequent hierarchical organization. On the basis of these results, we postulated that the structural properties of the folded conformers are of pivotal importance to obtain well-defined nanostructures. If the structural properties are susceptible to light stimulus, then the formation of different self-assembled structures should be anticipated. Therefore, we designed and synthesized stilbene dyad 1 (Fig. 1a; for synthesis and characterization, see Supplementary Methods), in which two stilbene units can be cross-linked via a [2+2] photocycloaddition between two vinylene units in the folded conformation34,35,36. This photocyclization should decrease the conformational flexibility of the folded conformer (Fig. 1b), and thus induce the generation of a different self-assembled structure. We found that the intact dyad 1 can self-assemble into right-handed (P-type) superhelical aggregates, whereas the cross-linked dyad is unable to form well-defined nanoaggregates. Even in the presence of merely minor amounts of the photoproduct, a different co-assembly pathway emerged upon co-assembling intact and cross-linked dyads, leading to entirely different nanoaggregates, including left-handed (M-type) superhelical co-aggregates (Fig. 1c). This work thus can be regarded as an unprecedented example of an integrated self-sorting system induced by external stimuli37.

Figure 1: Molecular structures and assembly processes of 1 and 1cyc.
Figure 1

(a,b) Molecular structures of the stilbene dyad 1 (a) and its corresponding [2+2] photocycloaddition product 1cyc (b). (c) Proposed self-assembly process of 1 and co-assembly process of 1 and 1cyc.

Cooperative self-assembly of 1

Chiral supramolecular aggregates of 1 were prepared by cooling hot MCH solutions of 1 ([1]=1.0 × 10−4 M) from 353 to 293 K at a cooling rate of 1 K min−1. At temperatures below 333 K (red curve in Fig. 2a), the absorption band at 323 nm, which is associated with the π–π* transition of trans-stilbene chromophores, was hypsochromically shifted to 304 nm (293 K), while an absorption shoulder emerged at ca. 358 nm (blue curve in Fig. 2a). Such a spectral change is typical of electronic interactions of transition dipoles between stilbene chromophores stacked in a face-to-face (H-type) arrangement38. In the CD spectra, a sharp growth of a bisignate CD signal with two positive maxima at 341 and 360 nm, together with a negative maximum at 287 nm (323 K) was observed initially (black curve in Fig. 2b). The zero crossing point of the bisignate signal was located at 304 nm, which is close to the absorption maximum at 323 K (dashed vertical line in Fig. 2a,b). This bisignate CD signal was indicative for a chiral exciton coupling of the stilbene chromophores with a clockwise (P-type) twist39. On further cooling the solution to 293 K, the intensity of the CD signals increased and the CD spectra became more complicated, providing two positive maxima at 348 and 365 nm and a negative maximum at 309 nm (blue curve in Fig. 2b). The observed spectral transition in the CD measurements implied a unique self-assembly process of 1 into chiral supramolecular aggregates (hereafter denoted as 1agg).

Figure 2: Ultraviolet (UV) absorption and CD spectroscopic, together with morphogical studies of 1.
Figure 2

(a,b) Change of the (a) UV absorption and (b) CD spectra of 1 ([1]=1.0 × 10−4 M) in MCH upon cooling the solution from 353 to 293 K (interval: 5 K, cooling-rate: 1 K min−1). Since no spectral change was observed between 353 and 333 K, only the spectra for 333 K (red) and 293 K (blue) are shown for clarity. (c) Normalized CD intensity (φn) at 365 nm as a function of the cooling temperature. Using a cooperative model, the red and black lines correspond to the simulated curves in the nucleation and elongation regimes, respectively. (df) AFM height images of (P)-helical ribbons of 1agg at 323 K. Scale bar, 50 nm. (g,h) AFM cross-sectional analysis between the red dots in images d and e. (i) Schematic representation of a (P)-superhelical ribbon. (j,k) TEM images of (P)-superhelical fibrils of 1agg found at 293 K. Scale bar, 300 nm. (l,o) AFM height images of (P)-superhelical fibrils of 1agg found at 293 K. Scale bar, 300 nm. (m,n) AFM cross-sectional analysis between the blue dots in image l. Samples were prepared by spin-coating MCH solutions of 1 ([1]=1.0 × 10−4 M) at appropriate temperatures onto HOPG (AFM) or carbon-coated copper grid (TEM). (p) Schematic representation of a (P)-superhelical fibril.

As the self-assembly process of 1 was found to be thermally reversible, we decided to further investigate its aggregation on cooling by monitoring the increase of CD intensity at 365 nm in intervals of 0.1 K. When the increase of the normalized CD intensity (φn), which shows the fraction of assembled molecules (φn=1.0 for Δɛmax; φn=0 for Δɛmin), was plotted against the temperature, a nonsigmoidal curve was obtained, which showed a sharp increase of CD activity around 328 K (Fig. 2c). Such a curve is characteristic for a nucleation–elongation (cooperative) assembly process, and the onset temperature for the elongation process (Te) was found at 327.7 K, which represents a critical temperature between (unfavourable) nucleation and (favourable) elongation40,41. This experimentally obtained curve could be fitted with a cooperative model that has been recently applied for a synthetic molecular assembly by van der Schoot, Meijer, Schenning and coworkers (Fig. 2c; for details, see Supplementary Methods)42. The curve fitting provided several thermodynamic parameters that characterize the assembly process of 1 (Supplementary Table 1), which include the enthalpy release in the elongation regime (ΔHe=−78.1 kJ mol−1) and the degree of cooperativity expressed by the activation constant (Ka=2.6 × 10−5). The obtained negative enthalpy value shows that the cooperative assembly of 1 is an enthalpically favored process, driven by multiple noncovalent forces such as π−π stacking and hydrogen-bonding. The low Ka value (Ka<<1) is indicative of a high degree of cooperativity in the formation process of 1agg. It is worth mentioning that the cooperative assembly of 1 was maintained on decreasing the concentration to 0.4 × 10−4 M, while Te was decreased to 318 K (Supplementary Fig. 1, Supplementary Table 1).

(P)-helical aggregates of 1

Atomic force microscopy (AFM) and transmission electron microscopy (TEM) observations revealed that the cooperative assembly of 1 leads to well-defined superhelical nanostructures with one-handed helicity (1agg). To visualize nanostructures formed in different regimes of the cooperative assembly model described above, solutions of 1 ([1]=1.0 × 10−4 M) were spin coated at either 323 K (just below Te) or 293 K (<<Te) onto highly oriented pyrolytic graphite (HOPG). Dynamic light scattering (DLS) measurements of the solution at 323 K revealed the presence of aggregates with an average hydrodynamic diameter (DH) of ca. 250 nm (Supplementary Fig. 2). The AFM images of the sample prepared from the solution at 323 K showed the formation of well-defined ribbon-like nanostructures with exclusively right-handed helicity, that is, (P)-helical ribbons (Fig. 2d). The extended (P)-helical morphology is consistent with the local helical stacking deduced from the CD measurements that showed a P-type twisting of the stilbene chromophore on stacking (see black curve in Fig. 2b). These (P)-helical ribbons have an average thickness of 3.7±0.3 nm (Fig. 2g), which is in good agreement with the molecular length of folded 1 (ca. 4 nm; see Supplementary Fig. 3). The angle (θ) and helical pitch of the ribbons are 41° and 8 nm, respectively (Fig. 2e,f,h). On the basis of the thickness of a molecular model for a folded conformer of 1 (Supplementary Fig. 3) and assuming a π−π stacking distance of 0.35 nm, the helical structure should consist of 11 stacked molecules of folded 1 per pitch (Fig. 2i).

Further cooling of the solution to 293 K resulted in the formation of very large aggregates, whose DH values could not be extracted by DLS, and the formation of higher order helical fibrils with an average thickness of 45±3 nm was confirmed by TEM and AFM imaging (Fig. 2j–o). These higher order fibrils also exhibited right-handed superhelicity ((P)-superhelical fibrils, Fig. 2p) with helical pitches of 300 nm (Fig. 2n) and helical angles (θ) of ca. 24° (Fig. 2o). Although the AFM analysis showed the formation of two distinct helical nanostructures, the CD cooling curve in the elongation regime is composed of a single elongation process (see Fig. 2c). This result was corroborated by a temperature-dependent ultraviolet absorption study, which also displayed a typical cooperative curve based on a single elongation regime (Supplementary Fig. 4). On the basis of these results, we concluded that the superhelical fibrils should only be formed from the helical ribbons at the very end of the elongation regime, and consequently their formation should not be reflected in the cooling curves.

Photoreactions within helical aggregates

Given that 1 adopts a folded conformation (Supplementary Fig. 3) in the supramolecular self-aggregates, the configuration of the stilbene chromophores should be suitable for intramolecular [2+2] photocycloadditions43,44,45,46. The molecular model for folded 1 showed that the distance between the two vinylene groups of two adjacent stilbene moieties was 0.35 nm, which is an appropriate distance for [2+2] photocycloadditions (Supplementary Fig. 3).

When helical fibrils of 1, dispersed in MCH, were exposed to irradiation with ultraviolet light (365 nm), the absorption band associated with the trans-stilbene chromophore decreased, concomitant with the emergence of broad absorption bands below 255 nm (Fig. 3a)47. The spectral change of the absorption leveled off after irradiation for 90 min, and the 1H nuclear magnetic resonance (NMR) analysis suggested the formation of a single photoproduct in 80% yield (Supplementary Fig. 5). The CD measurements showed a decrease of the bisignate signals as a result of the irradiation-induced bleaching of the stilbene chromophores (Supplementary Fig. 6). On spin coating this ultraviolet-irradiated solution onto HOPG, we found fibrillar nanostructures in quantities that were almost identical to those of 1agg (Fig. 3b, Supplementary Fig. 7). However, the resulting fibres exhibited ambiguous surfaces, which were clearly different from the well-defined superhelical structures of 1agg. On the basis of these observations, we propose that the superhelical fibrils are microscopically phase-separated during their formation, and that the majority of photoproduct (hereafter denoted as 1cyc) formed on ultraviolet-irradiation is confined within the superhelical structures. Only a minor amount of 1cyc, probably located on the fiber surface, might be partially dissolved.

Figure 3: Analysis of the photoproducts formed by exposing 1agg to ultraviolet (UV)-irradiation.
Figure 3

(a) UV absorption spectra of a MCH solution of 1 ([1]=1.0 × 10−4 M) at 293 K upon UV-irradiation (365 nm, 90 min). The photoconversion yield for 1cyc (80%) was determined by 1H NMR analysis. (b) AFM height image of aggregates (1:1cyc=20:80) spin-coated from a MCH solution onto HOPG. Scale bar, 500 nm. (c,d) FT/IR spectra of 1agg (blue) and aggregates (1:1cyc=20:80; black). Film samples for infreared spectroscopy were prepared by drop-casting MCH solutions (before and after UV-irradiation for 90 min) onto substrates. (e) ESI-MS spectra of 1 (blue) and 20:80 mixture of 1 and 1cyc (black). (f) Possible intramolecular photo-cross-linking reactions of 1 with assignment of the corresponding 1H NMR signals. (g) 1H NMR spectrum of 1 in CDCl3. (hj) 1H NMR spectra of 1cyc in CDCl3 after UV-irradiation in MCH. Pure 1cyc was prepared by UV-irradiation of a MCH solution ([1]=1.0 × 10−3 M) at 333 K for 1 h. (k) 1H NMR spectrum of a mixture of photoproducts in CDCl3 after UV-irradiation in CHCl3.

Fourier-transform infrared (FT-IR) spectra of the cast films prepared from the solutions before (1agg) and after exposure to 90 min of ultraviolet-irradiation exhibited a decrease of the C=C stretching band at 1,590 cm−1 and the C=C−H out-of-plane bending bands at 1,002, 989, and 960 cm−1, which are all associated with the vinylene group of the stilbene moieties (Fig. 3c,d)48. The possibility of intermolecular photoreactions of 1 can be excluded, based on the fact that only monomeric species (m/z=1,382) were detected in electrospray ionization mass (ESI-MS) measurements of the ultraviolet-irradiated solution. Conversely, dimeric or oligomeric species could not be detected (Fig. 3e). These results corroborate the occurrence of an intramolecular photoreaction, which in turn indirectly confirms an assembly mechanism of 1 through intramolecular folding. The absence of intermolecular [2+2] photocycloadditions suggests that the intermolecular stacking arrangement of adjacent folded 1 is not suitable for such photoreactions. This is most likely due to a rotational offset and consistent with the helical morphology of 1agg (Fig. 2d−f).

The 1H NMR analysis of the photoproduct in CDCl3 provided not only evidence for the formation of an intramolecular [2+2] cycloadduct (1cyc) but also insight into its steric configuration. As we were unable to characterize the photoproduct by 1H NMR from the ultraviolet-irradiated sample (90 min) used for the above analyses (Supplementary Fig. 5), we attempted to obtain a pure sample of the photoproduct via modified ultraviolet-irradiation conditions. A concentrated 1agg solution ([1]=1.0 × 10−3 M) that was exposed to ultraviolet-irradiation while being gently heated to 333 K provided the photoproduct in almost quantitative yield. The 1H NMR spectrum of this material displayed a single set of signals, in which all resonances in the aromatic region were subject to high-field shifts relative to those of intact 1 (Fig. 3g−j). The two doublets observed in the aliphatic region (Hf′ and Hg′) were ascribed to a cyclobutane ring49,50. The chemical shifts and the coupling constants of these doublets (δ=4.20 and 4.39 p.p.m.; J=5.9 Hz) suggest that 1cyc contains a stereoselectively formed cyclobutane ring with two pairs of cis-configurated phenyl groups. On the basis of these results, the presence of a photoisomer, in which the cyclobutane ring possesses four phenyl groups in all-trans configuration (1cyc′), can thus be excluded (Fig. 3f). The stereoselective photoreaction demonstrated that 1 adopts a specific chiral conformation in the fibrillar aggregates (Fig. 3f). Evidence supporting this notion was obtained in form of a complex 1H NMR spectrum, reflecting the formation of several photoproducts including isomerized products as well as 1cyc, when ultraviolet-irradiation experiments for monomeric 1 were carried out in CDCl3 (Fig. 3k).

Reconstruction of ultraviolet-exposed aggregates

We observed that photoproduct 1cyc is able to markedly influence the self-assembly process of 1 through thermal reconstruction, giving rise to the evolution of helical nanofibers with a chiral sense that is diametrically opposed to that of 1agg. To determine the effect of the content of 1cyc on the self-assembly of 1, we varied the yield of the photocycloaddition product by modulating the ultraviolet-irradiation time for 1agg ([1]=1.0 × 10−4 M; Fig. 4a and Supplementary Fig. 8). After ultraviolet-irradiation, solutions were heated to 353 K to dissociate all aggregates, before they were cooled to 293 K at a cooling rate of 1 K min−1. Accordingly, we obtained 1agg, containing different molar fractions of 1cyc (hereafter denoted as (1:1cycf=0.1–0.8)agg, wherein the subscript f indicates the molar fraction of 1cyc), and thermally reconstructed co-aggregates of 1 and 1cyc (denoted as (1:1cycf=0.1–0.8)recon), containing different molar fractions of 1cyc (f=0.1, 0.25, 0.6, and 0.8).

Figure 4: CD studies for the reconstruction processes of co-aggregates consisting of 1 and 1cyc.
Figure 4

(a) Schematic representation of the conversion procedure from 1agg to (1:1cycf)recon. (b,c) CD spectra of mixtures of 1 and 1cyc in MCH (total concentration=1.0 × 10−4 M) at 293 K (b) before [(1:1cycf)agg] and (c) after thermal annealing [(1:1cycf)recon]. (d) Normalized CD intensity at 370 nm (φn) as a function of the temperature in the reconstruction processes of (1:1cycf)recon from 353 to 293 K (cooling rate: 1 K min−1). The arched arrow indicates the transition of the cooling-curves of 1 on increasing the fraction of 1cyc. The inset shows magnified plots in the nucleation regimes close to Te, and the arrow indicates the transition of the cooling curves of 1 on increasing the fraction of 1cyc. (e,f) Isodesmic model fitting of the cooling curves of (1:1cycf=0.6)recon and (1:1cycf=0.8)recon. (g,h) Cooperative model fitting of the cooling curves of (1:1cycf=0.1)recon and (1:1cycf=0.25)recon.

Figure 4b,c compare CD spectra of (1:1cycf=0.1–0.8)agg and (1:1cycf=0.1–0.8)recon. The reconstructed co-aggregates with low proportions of 1cyc, that is, (1:1cycf=0.1)recon and (1:1cycf=0.25)recon, displayed CD signals with large positive peaks at 209 and 327 nm, as well as negative peaks at 268 and 372 nm (Fig. 4c), which are considerably different from the CD signals of the corresponding (1:1cycf)agg (Fig. 4b). The positive and negative signs in the longer wavelength region indicated a counterclockwise helicity (M-type) for the stilbene chromophores. The CD signals of (1:1cycf=0.1)recon and (1:1cycf=0.25)recon are not mirror images of those of 1agg, and the CD intensities of the reconstructed co-aggregates were notably higher than those of the self-aggregates (Fig. 4c). For example, the anisotropy factor (|g|=Δɛ/ɛ) of 1 in 1agg was 0.0046 (at 364 nm), which increased to 0.012 (at 372 nm) in (1:1cycf=0.1)recon. This remarkable 1cyc-induced CD enhancement suggested that the self-assembly of 1 could be largely affected by 1cyc. Further increasing the 1cyc fraction to 0.6 and 0.8 [(1:1cycf=0.6)recon and (1:1cycf=0.8)recon] weakened the CD intensity (Fig. 4c), which demonstrated that the new CD signals do not originate from the self-assembly of 1cyc.

To gain further insight into how the self-assembly process of 1 can be affected by 1cyc, we monitored the increase of the CD activity at 370 nm on the reconstruction process, that is, during cooling (Fig. 4d). The 1cyc-rich reconstructed co-aggregates (1:1cycf=0.6)recon and (1:1cycf=0.8)recon displayed sigmoidal cooling curves. These curves could be fitted with an isodesmic (equal K) model, wherein the whole assembly process is governed by a single equilibrium constant (Kiso; Fig. 4e,f; for details, see Supplementary Methods)51. The theoretical fitting afforded thermodynamic parameters including enthalpy release (ΔHiso), Kiso in the elongation regime, and the melting temperature Tm at which φn=0.5 (Supplementary Table 2). The Kiso values of (1:1cycf=0.6)recon and (1:1cycf=0.8)recon at 298 K are 8.6 × 104 and 8.3 × 104 M−1, respectively. It is noteworthy that, as described previously, the cooperative assembly of pure 1 (to give 1agg) was maintained on decreasing its concentration to the same concentration of 1 as in (1:1cycf=0.6)recon (0.4 × 10−4 M), which revealed the occurrence of co-aggregation through the reconstruction process.

Conversely, for the reconstructed co-aggregates with low proportions of 1cyc, that is, (1:1cycf=0.1)recon and (1:1cycf=0.25)recon, cooperative curves were obtained in the cooling process (Fig. 4g,h). However, these curves are different from those of 1agg, and reflect a more moderate nucleation process (inset in Fig. 4d), followed by a steeper progression of the elongation process (Fig. 4d). These findings suggested that these co-aggregates are formed through processes with lower degrees of cooperativity, but with larger enthalpy changes in the elongation regime. Indeed, a theoretical fitting of these curves to the nucleation–elongation model provided thermodynamic parameters Te, ΔHe, and Ka (Supplementary Table 3). The value of Ka, which reflects degree of cooperativity, was found to increase from 2.6 × 10−5 for 1agg to 5.9 × 10−4 for (1:1cycf=0.1)recon. Furthermore, co-aggregates (1:1cycf=0.1)recon exhibited a more negative enthalpy release (ΔHe=−187.8 kJ mol−1) relative to that of 1aggHe=−78.1 kJ mol−1), thus revealing a stronger binding of the nuclei in the elongation regime of the co-aggregates, despite of the decrease of the stilbene chromophore concentration in the entire system. Accordingly, our analysis demonstrated that even a small amount of photoproduct 1cyc enabled 1 to assemble into different co-aggregates52,53,54.

Nanostructures of reconstructed co-aggregates

As the CD studies revealed reconstruction processes with different cooperativity depending on the 1cyc content (Fig. 4), we analysed the resulting nanostructures by AFM. Initially, we studied nanostructures formed by pure 1cyc prepared under special conditions (see Fig. 3), and confirmed that 1cyc is able to form only amorphous small aggregates (DH=ca. 50 nm in MCH) without CD activity (Supplementary Fig. 9). AFM images of co-aggregates (1:1cycf=0.8)recon, obtained from solutions with a combined concentration of 1.0 × 10−4 M and reconstructed by the isodesmic mechanism, displayed irregular amoeba-like structures with an average thickness and width of 2.1±0.4 and 20 nm, respectively (Fig. 5a–d). The DLS analysis of the reconstructed solution revealed the presence of particles with an average DH of ca. 400 nm, and thus suggested that these ill-defined aggregates were already formed in solution (Supplementary Fig. 10). It is worth noting that helical fibrillar nanostructures were not encountered for these co-aggregates, although pure 1 afforded elongated nanofibrils even at a concentration of 2.0 × 10−5 M (Supplementary Fig. 11). These findings demonstrated that minor amounts of 1 are incorporated into the amoeba-like nanostructures, and that self-sorting through the reconstruction process does not occur between 1 and 1cyc55. The formation of ill-defined morphologies by this 1cyc-rich co-aggregated system showed that the photoreaction of 1 deteriorates its aggregation ability, most likely due to decreased conformational flexibility of the folded structure. A similar observation was made for the previously reported oligo(p-phenylenevinylene) dyad33, which produced only irregular fibrils, due to the decreased conformational flexibility of the folded conformer by strong intramolecular π−π stacking.

Figure 5: Morphologies of co-aggregates consisting of 1 and 1cyc.
Figure 5

(a,b) AFM height images, (c) AFM cross-sectional analysis between the red dots in image a, (d) cartoon representation of the observed nanostructure of (1:1cycf=0.8)recon spin-coated from a MCH solution (total concentration=1.0 × 10−4 M) onto HOPG. Scale bar, 300 nm. (e,f) AFM height images, (g) AFM cross-sectional analysis between the red dots in image f, (h) cartoon representation of the observed nanostructure of (1:1cycf=0.6)recon spin-coated from a MCH solution (total concentration=1.0 × 10−4 M) onto HOPG. Scale bar, 300 nm. (i) AFM height images of the observed nanostructure of (1:1cycf=0.25)recon spin-coated from a MCH solution (total concentration=1.0 × 10−4 M) onto HOPG. Scale bar, 300 nm. (j,k) AFM height images, and (l) cartoon representation of the observed nanostructure of (1:1cycf=0.1)recon spin-coated from a MCH solution (total concentration=1.0 × 10−4 M) onto HOPG. Scale bar, 300 nm.

On decreasing the molar fraction of 1cyc to 0.6 [(1:1cycf=0.6)recon], a small amount of annular nanostructures emerged in addition to the amoeba-like fibrils (Fig. 5e–h). DLS measurements confirmed the simultaneous formation of annular (DH=ca. 30 nm) and fibrillar aggregates (DH=ca. 450 nm; Supplementary Fig. 10). For these annular nanostructures, an average outside diameter and thickness of 25±2 and 1.5±0.2 nm were observed, respectively. Similar well-defined and closed nanostructures were not encountered for the aggregation of individual components of either 1 (Fig. 2) or 1cyc (Supplementary Fig. 9a,b). Even more interestingly, a further decrease of the molar fraction of 1cyc to 0.25 [(1:1cycf=0.25)recon] and 0.1 [(1:1cycf=0.1)recon] resulted in the generation of left-handed (M-type) superhelical fibrils (Fig. 5i–l, Supplementary Fig. 12) with a helical angle (θ) of 40° (Fig. 5k). When considering these results in combination with those of the CD studies (Fig. 4b,c), it becomes clear that 1cyc alters the self-assembly mechanism of 1 drastically, affording superhelical structures with a diametrically opposed chirality to that of 1agg.

To further investigate the observed difference between the two cooperative assembly pathways of 1agg and (1:1cycf=0.1)recon, we studied the morphologies of the ‘nuclei’ 1nuc and (1:1cycf=0.1)nuc, which we suspected to be responsible for the formation of these (co)aggregates. For this purpose, AFM measurements were carried out on samples obtained from spin-coating aggregate solutions heated to Te (328 K) onto HOPG. AFM images of 1nuc displayed a number of non-uniform particles, together with a small amount of extended helical fibrils (Fig. 6a,b). In strong contrast, AFM analysis of (1:1cycf=0.1)nuc revealed agglomerates of curved nanostructures including annular structures (Fig. 6d,e). This result was supported by DLS measurements that showed different aggregate sizes for 1nuc and (1:1cycf=0.1)nuc (Fig. 6c,f). The result of (1:1cycf=0.1)nuc demonstrated that the formation of curved nanostructures should be involved in the nucleation process of the (M)-superhelical fibrils. Accordingly, we would like to propose the cooperative assembly mechanisms shown in Fig. 6g,h for 1agg and (1:1cycf=0.1)recon, respectively.

Figure 6: Comparison of the cooperative assembly processes of 1agg and (1:1cycf=0.1)recon.
Figure 6

(a,d) AFM height images of 1nuc and (1:1cycf=0.1)nuc, respectively. Scale bar, 150 nm. (b,e) Magnified AFM images of typical nanostructures in (a,d), respectively. Scale bar, 150 nm. Samples were prepared by spin-coating MCH solutions (total concentration=1.0 × 10−4 M) at 328 K (Te) onto HOPG. (c,f) DLS-derived size distribution of aggregates of 1nuc and (1:1cycf=0.1)nuc in MCH, respectively. (g,h) Schematic representation of the proposed cooperative assembly processes of 1agg and (1:1cycf=0.1)recon, respectively.

In the absence of 1cyc, 1 self-assembles via intramolecular folding to form helical nuclei (1nuc, Fig. 6g). The bisignate CD signal of 1 observed at 323 K (see black curve in Fig. 2b), which is slightly below Te (328 K), can be attributed to oligomeric (P)-helical stacks composed of chirally folded 1 that also adopts a (P)-helical conformation. In the elongation regime below Te, these helical 1nuc nuclei grow exponentially into (P)-helical ribbons, which further aggregate to form higher order (P)-superhelical fibrils, leading to an enhanced CD intensity (Fig. 6g). In the presence of minor amounts of 1cyc, 1 is assumed to pursue the same folding–assembling process. However, extended helical aggregation should be compromised by covalently folded 1cyc, which is unable to form well-defined aggregates, but can induce strong curvature on co-aggregation. In such 1cyc-doped systems, curved nuclei (1:1cycf=0.1)nuc should accordingly be formed (Fig. 6h). This co-aggregation motif is similar to the aggregation of our previously reported azobenzene dyad forming annular nanostructures32. Due to the non-helical stacking of the co-aggregates, the resulting nuclei must have π−π interactive surfaces, and can thus aggregate further on extension through π−π interaction (Fig. 6h). FT-IR measurements indicated that hydrogen bonding between amide groups facilitates the formation of both (P)- and (M)-superhelical aggregates (Supplementary Fig. 13). Due to the unique organization process of (1:1cycf=0.1–0.25)recon, which is completely different from that of 1agg, the molecular chirality of 1 is transferred to the higher order structures via a different mechanism, giving rise to the formation of (M)-superhelical fibrils, which exhibit complicated CD spectra as a result of multiple exciton coupling.


The spectroscopic and microscopic studies described so far unveiled complex self-assembly pathways for 1, which can be affected by co-assembling with its photoproduct 1cyc. In Supplementary Fig. 14, three possible self- and co-assembling pathways for 1 and 1cyc are outlined, whereby the energy diagrams are based on the spectroscopic studies. Self-aggregation of 1 via intramolecular folding and extended helical stacking (Supplementary Fig. 14a) is significantly different from the annular supramolecular polymerization of the azobenzene analogue32. The extended helical aggregation of 1 might be caused by a stronger π−π stacking ability of the stilbene chromophore compared with the azobenzene chromophore. Based on the observed Ka and Te values for 1, we obtained a free energy change of nucleation (ΔGn) of 3.7 kJ mol−1 at Te (Supplementary Fig. 14b)56. The positive ΔGn value indicated that this cooperative pathway involves an unfavourable nucleation process, in which uphill nucleation and downhill elongation processes can be clearly distinguished. In sharp contrast, pure 1cyc only provided amorphous aggregates, due to impaired π−π stacking ability and conformational flexibility. However, when co-assembling with varying minor amounts of 1, 1cyc can form either amoeba-like fibrils or annular nanostructures (Supplementary Fig. 14c) via non-cooperative (isodesmic) assembly processes (Supplementary Fig. 14d). The lack of cooperativity in these 1cyc-rich systems can be rationally explained on the basis of a dilution effect of 1 by 1cyc, which prevents 1 from nucleating. When 1cyc is the minor component, the mixtures co-assembled in parallel using another cooperative pathway, in which the cooperativity is lower than that of 1agg (Supplementary Fig. 14e). For the 1cyc-poor co-aggregates, ΔGn values of −4.8 and −5.6 kJ mol−1 for (1:1cycf=0.1)recon and (1:1cycf=0.25)recon, respectively, were calculated from Ka and Te values (Supplementary Fig. 14f). These negative ΔGn values uniquely characterize the assembly process of the co-aggregates as a cooperative downhill assembly model with ‘favourable’ nucleation41. The generation of energetically more stable nuclei is probably due to a stronger interchain association of helically folded quasi-one-dimensional supramolecular polymer chains (Fig. 6h).

Ultraviolet-irradiation of the reconstructed aggregates at 250 nm did not regenerate the stilbene moieties via the retrophotoreaction and we could accordingly not obtain the original supramolecular assemblies. Our present system is nevertheless highly remarkable, as multicomponent self-assembled systems are often subject to narcissistic self-sorting, resulting in the formation of thermodynamic product mixtures. Although integrative social self-sorting systems are abundant in natural molecular assemblies, the occurrence of such sophisticated molecular ensembles in synthetic systems strongly relies on specific noncovalent interactions. The successful integration of intact molecules and photoproducts into the same self-assembled nanosystem through reconstruction might be due to small alterations of the molecular shape before and after the photoreaction37. A similar approach could be applied to other photoreactive units with proper covalent linkages. Our results thus provide new insights into multicomponent self-assembled systems, the morphologies and properties of which could be tuned by modulating the mixing ratio of the two constituent components.



All starting materials and reagents were purchased from commercial suppliers. Compound 1 was synthesized according to synthetic scheme in Supplementary Methods. Characterization of 1 and its photoproduct 1cyc was achieved by 1H (Supplementary Figs 15 and 18), 13C (Supplementary Fig. 16), and 2D-COSY (Supplementary Figs 17 and 19) NMR spectroscopy, in combination with ESI-MS.

Atomic force microscopy

AFM images were acquired under ambient conditions using a Multimode 8 Nanoscope V microscope (Bruker Instruments) in peak force tapping (Scanasyst) mode. Silicon cantilevers (SCANASYST-AIR) with a spring constant of 0.4 N m−1 and frequency of 70 kHz (nominal value, Bruker, Japan) were used in peak force tapping mode. Samples were prepared by spin-coating assembly solutions onto freshly cleaved HOPG.

Photoirradiation experiments

Photoirradiation experiments were performed using 365-nm ultraviolet light from a LED lamp (17 mW cm−2). Sample solutions in a quartz cuvette were placed at the distance of 5 cm from the light source.

Additional information

How to cite this article: Yamauchi, M. et al. Photoreactive helical nanoaggregates exhibiting morphology transition on thermal reconstruction. Nat. Commun. 6:8936 doi: 10.1038/ncomms9936 (2015).


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This work was supported by the Grant-in-Aid for scientific research on innovative areas ‘π-System Figuration: Control of Electron and Structural Dynamism for Innovative Functions’ from the Ministry of Education, Culture, Sports, Science and Technology (MEXT), Japan. M.Y. thank the Japan Society for the Promotion of Science (JSPS) for a research fellowship for young scientists (26·7715).

Author information


  1. Department of Applied Chemistry and Biotechnology, Graduate School of Engineering, Chiba University, 1-33 Yayoi-cho, Inage-ku, Chiba 263-8522, Japan

    • Mitsuaki Yamauchi
    • , Takashi Karatsu
    •  & Shiki Yagai
  2. Department of Chemistry, Graduate School of Science, Chiba University, 1-33 Yayoi-cho, Inage-ku, Chiba 263-8522, Japan

    • Tomonori Ohba
  3. Molecular Chirality Research Center, Chiba University, 1-33 Yayoi-cho, Inage-ku, Chiba 263-8522, Japan

    • Shiki Yagai


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S.Y. and M.Y. conceived the project and developed the concept of the manuscript. M.Y. synthesized and characterized the compounds, and performed most of the experimental work. T.O. performed the TEM experiments. S.Y. and M.Y. wrote the manuscript. T.K. discussed the results and commented on the manuscript.

Competing interests

The authors declare no competing financial interests.

Corresponding author

Correspondence to Shiki Yagai.

Supplementary information

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    Supplementary Information

    Supplementary Figures 1-19, Supplementary Table 1-3, Supplementary Methods and Supplementary References


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