Regioselective synthesis of C3 alkylated and arylated benzothiophenes

Abstract

Benzothiophenes are heterocyclic constituents of important molecules relevant to society, including those with the potential to meet modern medical challenges. The construction of molecules would be vastly more efficient if carbon–hydrogen bonds, found in all organic molecules, can be directly converted into carbon–carbon bonds. In the case of elaborating benzothiophenes, functionalization of carbon–hydrogen bonds at carbon-number 3 (C3) is markedly more demanding than at C2 due to issues of regioselectivity (C3 versus C2), and the requirement of high temperatures, precious metals and the installation of superfluous directing groups. Herein, we demonstrate that synthetically unexplored but readily accessible benzothiophene S-oxides serve as novel precursors for C3-functionalized benzothiophenes. Employing an interrupted Pummerer reaction to capture and then deliver phenol and silane coupling partners, we have discovered a directing group-free method that delivers C3-arylated and -alkylated benzothiophenes with complete regioselectivity, under metal-free and mild conditions.

Introduction

Benzothiophenes are sulfur containing heterocyclic molecules that when functionalized, are often incorporated into important molecular scaffolds which have found utility in materials science1 and in particular in biology and medicine2,3,4,5,6,7,8. For example, sertaconazole2 is an antifungal medicine and raloxifene3 is used in the prevention of osteoporosis, and other benzothiophenes have promising biological activity in the areas of diabetes4, antibacterials5 and water regulation6 among others7,8 (Fig. 1a).

Figure 1: C3-functionalized benzothiophenes.
figure1

(a) Prevalence of C3 functionalized benzothiophene motifs in biologically active molecules including commercial drugs and others with potential in diverse target areas. (b) Traditional methods of C3 C–H arylation of benzothiophenes rely on transition metals and alkylation at C3 is limited in scope and either requires a directing group or exhibits poor regioselectivity. (c) A metal-free approach to benzothiophene C3 C–H arylation and alkylation employing synthetically unexplored benzothiophene S-oxides does not require a directing group and is completely regioselective by virtue of the interrupted Pummerer reaction mechanism which allows the coupling partner to be delivered in a site-selective manner (this work). DG, directing group.

The synthesis of these important molecules can be achieved by construction of one or both rings, or via direct functionalization of the benzothiophene core9,10,11. Due to the ubiquity of C–H bonds, the most efficient methods of C–C bond construction are based on C–H functionalization12,13. Functionalization at C2 of readily available benzothiophenes14 is generally well established due to the increased acidity of the C–H bond15. However, C3 C–H functionalization is underdeveloped. In the absence of a directing group, direct C–H arylation at C3 of benzothiophenes is traditionally accomplished with palladium catalysts and coupling partners such as aryl-halides16,17,18,19, -borons20,21, -silanes22, -sulfonyl chlorides23 and-iodoniums24 (Fig. 1bi). While recent disclosures address the problems associated with harsh conditions, expensive ligands and regioselectivity issues, the risk of metal contamination remains, particularly when the products are intended for human consumption25 or to be used in organic materials where performance can be adversely affected by trace metals26.

In contrast to C3 C–H arylation of benzothiophenes, C3 C–H alkylation is significantly more challenging and methods are in drastically short supply as reported procedures are severely limited and often described in isolation: Friedel–Crafts alkylation at C3 is restricted to benzylation and suffers from poor regioselectivity27, and C–H metallation at C3, whether stoichiometric28 or catalytic with palladium29 (at 100 °C with primary alkyl boronic acids) or iridium30 (at 90 °C with a diazomalonate), requires an ancillary directing group at C2 to selectively activate the C–H bond at C3 (Fig. 1bii).

Herein, we report a method for the completely regioselective, metal-free C3 C–H functionalization of benzothiophenes that utilizes synthetically unexplored benzothiophene S-oxides 1, readily available from straightforward oxidation of benzothiophenes, and phenol, propargyl silane and allyl silane coupling partners, that does not require a conventional directing group (Fig. 1c). This umpolung strategy couples two carbon sites that are inherently nucleophilic and delivers C3-arylated and the more challenging C3-alkylated benzothiophenes under mild conditions, with broad scope. The reaction operates via activation of the S–O bond in benzothiophene S-oxides 1 for an interrupted Pummerer reaction31 with phenol, or allyl- or propargyl-silanes to form intermediates I and II, which are predisposed for charge accelerated [3,3]-sigmatropic rearrangement32, resulting in C–C bond formation, therefore delivering the coupling partner in a perfectly site-selective manner.

Results

Metal-free C3 C–H arylation

Metal-free methods complement synthetic procedures traditionally based upon the use of transition metals33. Recently, we34,35,36,37,38,39,40 and others41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56 reported the metal-free, sulfoxide directed57 C–H functionalization of a variety of molecular scaffolds, which was enabled by an interrupted Pummerer reaction28. Spurred on by these recent achievements, we considered the use of benzothiophene S-oxides 1 for the synthesis of important C3-functionalized benzothiophenes, as the corresponding sulfonium salts I and II, formed after reaction with the coupling partners, lack aromaticity about the five-membered ring and should therefore undergo facile C–C bond formation via [3,3]-sigmatropic rearrangement58, thus delivering unexplored reactivity not accessible in benzothiophenes. Surprisingly, benzothiophene S-oxides have found limited application in synthesis and their chemistry is relatively unexplored59,60,61. In fact, interrupted Pummerer-type reactivity of benzothiophene S-oxides has not been reported until now62,63. In contrast to previous studies exploiting sulfoxide groups to direct metal-free functionalization, our approach avoids the installation and use of a formal directing group, instead we recruit the sulfur intrinsic to benzothiophenes to capture and deliver the coupling partner.

We began our investigation by attempting to couple isolable 5-bromobenzothiophene S-oxide 1a with 4-methylphenol (Table 1). Thus, 1a, readily prepared from the corresponding benzothiophene by straightforward oxidation with mCPBA/BF3·OEt2, was treated with trifluoroacetic acid anhydride (TFAA), and reacted with the phenol coupling partner42,43,46. The interrupted Pummerer reaction and, surprisingly, the resulting [3,3]-sigmatropic rearrangement occurred at or below ambient temperature (cf. Fig. 1c, I). Although the phenol ring is dearomatized during the [3,3]-sigmatropic rearrangement, C–C bond formation is facile due to the lack of aromaticity in the five-membered ring of I58. After rearomatization of the phenol ring, thioacetal 3a was formed (in 67% yield when isolated) and its structure elucidated by X-ray crystallography (Table 1). Upon warming the reaction mixture to 45 °C in the presence of para-toluene sulfonic acid (pTsOH), 3a opened to form the desired C3-arylated benzothiophene 4a in high isolated yield (77%) and complete control over regiochemistry with respect to both C3 of the benzothiophene and the ortho position of the phenol.

Table 1 Metal-free C3 C–H arylation of benzothiophene S-oxides.

In exploring the scope of the phenol coupling partner, we found that various functionality, including bromo (4b,i), iodo (4c), ester (4d), trifluoromethyl (4e), nitro (4g,j), keto (4h), amido (4k) and chloro (4l) were well tolerated, regardless of their position on the phenol ring. 3-Chlorophenol (cf. 4l) and estrone (cf. 4m), containing two inequivalent ortho positions, underwent completely regioselective cross-coupling. In the case of 4m (and later with 4r and 4t), opening of the intermediary thioacetal (cf. 3a) proceeded in higher yield when iodine was used in place of pTsOH (69% versus 30%).

Although many of the employed benzothiophene S-oxides 1 were readily prepared and isolated in 50-85% yield from the corresponding benzothiophenes (for example, those used in the preparation of 4a, 4q, 4t and 4u, and later for 8a, 8b, 8d, 8e and 8j), the chemistry of benzothiophene S-oxides 1 is significantly different to that of aryl sulfoxides and, as previously noted59, certain substitution patterns in 1 favour a formal [4+2] cycloaddition dimerization upon concentration (for example, benzothiophene S-oxides required for the formation of 4f, 4n, 4p, 4r and 4s). Using conditions previously reported for the oxidation of thiophenes64, we were pleased to find that benzothiophenes could be oxidized with mCPBA/BF3·OEt2, worked-up via a simple filtration and directly applied in the metal-free cross-coupling reaction. This protocol enabled access to C3-arylated benzothiophenes 4 derived from unsubstituted benzothiophene S-oxides (cf. 4i-k), and those with versatile bromo substitution at all positions of the benzene ring (cf. 4n, o, r and s), as well as chloro substitution at C5 (4p). Notably, and in contrast to metal-mediated couplings, the process is broadly compatible with the presence of halide substituents allowing further, downstream functionalization of products.

In addition, the nitro group at C5 (cf. 4q), as well as CO2Me (cf. 4t) and phenyl (cf. 4u) at C2, where the corresponding benzothiophene S-oxides were isolable, were also well tolerated. The presence of bromo or cyano substituents at C2 of 1 resulted in a complex mixture, presumably due to the instability of the corresponding thioacetals 3 bearing a leaving group at C2. In the case of C2-CO2Me substituted benzothiophene, spontaneous lactonization between the phenol and ester moieties formed isothiacoumestan 4t which constitutes the core structure of the known antibacterial5 shown in Fig. 1a. Indeed, the 2-(benzothiophen-3-yl)phenol core strcuture is found in molecules that bear a variety of biological activity (cf. Fig. 1a)4,5,6,7,8.

Metal-free C3 C–H alkylation

Moving onto the more challenging C3 C–H alkylated benzothiophenes using the metal-free protocol, we established that both allyl silanes 5 and propargyl silanes 7 successfully couple with benzothiophene S-oxides 1 to deliver a range of C3-allylated (6) and -propargylated benzothiophenes (8) with total regiocontrol (Table 2). The allylation proceeded smoothly with allyl silanes that were unsubstituted (6a) and that contained a β-methyl (6b) substituent, as well as with those bearing reactive functional groups including β-chloromethyl (6c), β-methylacetate (6d), β-ester (6e), β-bromo (6f), γ-keto (6g) and γ-ester (6h) substituents.

Table 2 Metal-free C3 C–H alkylation of benzothiophene S-oxides.

The scope of the C3 C–H propargylation with respect to the benzothiophene S-oxide 1 was found to be broad and enveloped versatile substituents at various positions. For example, substituted benzothiophene S-oxides bearing C2 bromo (8a), cyano (8b), ester (8c), alkyl (8d,e) and phenyl (8f), as well as C5 carrying nitro (8h), bromo (8i) and aryl (8j), and bromo at C6 (8v) furnished C3-alkylated benzothiophenes. Again, a procedure involving in situ oxidation to the benzothiophene S-oxide followed by functionalization proved highly effective (for example, in the formation of 8g).

The propargylic silane coupling partner 7 was also amenable to variation, with various primary silanes containing primary alkyl (8aj,k), alkyl halide (8l), secondary alkyl (8m,n), phenyl (8o) and silyl (8p,q) substituents at the terminal position, as well as unsubstituted propargyl silanes (8r), all undergoing efficient metal-free cross coupling. In addition, more challenging hindered secondary propargyl silanes delivered branched products 8sv that would be inaccessible via conventional C3-alkylation techniques that rely on bromination followed by metalation/electrophilic trapping14. Alkylation product 8q is a key intermediate in the synthesis of an inducer of bacterial biofilms7.

Mechanistic discussion

The mechanisms of the metal-free C3 C–H arylation and alkylation processes are intrinsically related. Based upon our previous and present experimental observations, we propose that an interrupted Pummerer reaction to form I or II, via addition of oxygen of phenols 2 (refs 42, 43, 46) or SE2′ addition of the silanes 5 (refs 34, 35, 45) and 7 (refs 36, 37, 38) to the sulfur of activated benzothiophene S-oxide III, precedes a charge accelerated [3,3]-sigmatropic rearrangement, resulting in complete regioselective C–C bond formation at the expense of a C–H bond (Fig. 2). Due to the rapid [3,3]-sigmatropic rearrangement resulting from the lack of aromaticity in I and II, we were unable to isolate or observe these sulfonium salts. Evidence for these mechanisms, rather than a direct addition to C3 of III, comes by way of the exclusive formation of ortho substituted phenols 4, allylated products 6g and 6h and propargylated products 8; para-substituted phenols 11, C3-allylated benzothiophenes 12 and C3-allenyl benzothiophenes 13 would be expected from direct addition but were not observed.

Figure 2: Mechanism of regioselective metal-free C3 C–H functionalization of benzothiophene S-oxides.
figure2

Activated benzothiophene S-oxides III capture nucleophilic coupling partners prior to regioselective delivery to C3 via a charge accelerated [3,3]-sigmatropic rearrangement of intermediates I and II. The expected products of direct addition of nucleophiles to III, the para-substituted phenols 11, alkenes 12 and allenes 13, were not observed. Nu, nucleophile.

Discussion

In summary, we have described a metal-free approach that harnesses the synthetic potential of benzothiophene S-oxides, readily accessible from benzothiophenes, to generate C3-functionalized benzothiophenes at the expense of C–H bonds. The absolute regiocontrol observed stems from the ability of the activated benzothiophene S-oxide to first capture the nucleophilic coupling partner and then deliver it to C3. The method utilizes readily available coupling partners, has broad scope and by virtue of the facile interrupted Pummerer reaction and charge accelerated [3,3]-sigmatropic rearrangement sequence, the latter facilitated by the non-aromatic benzothiophenium salt intermediates (cf. I and II), operates under mild conditions. This directing group-free method delivers C3-arylated products that map directly onto medicinally relevant scaffolds, and unlike previously reported methods for C3 C–H alkylation of benzothiophenes, the process does not require a directing group at C2, thus making available greater diversity in important benzothiophene scaffolds.

Methods

General

Supplementary Figures 1–61 for the NMR spectra, Supplementary Fig. 62 for the X-ray crystallographic analysis of 3a, Supplementary Tables 1–7 for X-ray crystallographic data, and Supplementary Methods giving full experimental details and the characterization of compounds are given in the Supplementary Information.

General procedure for C3 C–H arylation of benzothiophene S-oxides

To an N2 flushed, oven dried reaction vessel equipped with a magnetic stir bar, benzothiophene S-oxide 1 (0.2 mmol) and CH2Cl2 (1 ml) were added. The mixture was stirred at −40 °C and TFAA (0.3 mmol) was added. After 5 min, phenol 2 (0.3 mmol) dissolved in CH2Cl2 (1 ml) was added and the mixture stirred for 15 min, before removing the cooling bath and stirring the mixture at ambient temperature overnight (16 h). pTsOH (0.4 mmol) was added, and the mixture heated at 45 °C for 5 h. Water (3 ml) was added and the aqueous phase was extracted with CH2Cl2 (3 × 5 ml). The combined organic phases were dried over MgSO4 and concentrated in vacuo. The crude mixture was purified by column chromatography on silica gel to give pure C3-arylated benzothiophenes 4.

General procedure for C3 C–H alkylation of benzothiophene S-oxides

To an N2 flushed, oven dried reaction vessel equipped with a magnetic stir bar, benzothiophene S-oxide 1 (0.2 mmol), silane 5 or 7 (0.3 mmol) and MeCN (1 ml) were added. The mixture was stirred at 0 °C and TFAA (0.3 mmol) was added. The cooling bath was removed and the mixture stirred at ambient temperature overnight (16 h). Saturated NaHCO3(aq) (3 ml) was added and the aqueous phase was extracted with EtOAc (3 × 5 ml). The combined organic phases were dried over MgSO4 and concentrated in vacuo. The crude mixture was purified by column chromatography on silica gel to give pure C3-allylated (6) or -propargylated (8) benzothiophenes.

Data availability

The X-ray crystallographic coordinates for 3a have been deposited at the Cambridge Crystallographic Data Centre (CCDC) under deposition number CCDC 1511568. This data can be obtained free of charge from the CCDC via www.ccdc.cam.ac.uk/data_request/cif. The authors declare that all other data supporting the findings of this study are available within the article and its Supplementary Information file.

Additional information

How to cite this article: Shrives, H. J. et al. Regioselective synthesis of C3 alkylated and arylated benzothiophenes. Nat. Commun. 8, 14801 doi: 10.1038/ncomms14801 (2017).

Publisher’s note: Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

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Acknowledgements

We thank EPSRC (Postdoctoral Fellowship to J.A.F.-S.; Established Career Fellowship to D.J.P.), The University of Manchester (Lectureship to A.P.P.; Studentship to H.J.S.) and Novartis (Studentship to H.J.S.) for their generous support.

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H.J.S., J.A.F.-S. and C.H. performed the experiments, analysed the data and prepared the Supplementary Information. A.P.P. and D.J.P. designed the project and wrote the manuscript.

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Correspondence to David J. Procter.

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Shrives, H., Fernández-Salas, J., Hedtke, C. et al. Regioselective synthesis of C3 alkylated and arylated benzothiophenes. Nat Commun 8, 14801 (2017). https://doi.org/10.1038/ncomms14801

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