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Evolution of a cytokine using DNA family shuffling

Abstract

DNA shuffling of a family of over 20 human interferon-α (Hu-IFN-α) genes was used to derive variants with increased antiviral and antiproliferation activities in murine cells. A clone with 135,000-fold improved specific activity over Hu-IFN-α2a was obtained in the first cycle of shuffling. After a second cycle of selective shuffling, the most active clone was improved 285,000-fold relative to Hu-IFN-α2a and 185-fold relative to Hu-IFN-α1. Remarkably, the three most active clones were more active than the native murine IFN-αs. These chimeras are derived from up to five parental genes but contained no random point mutations. These results demonstrate that diverse cytokine gene families can be used as starting material to rapidly evolve cytokines that are more active, or have superior selectivity profiles, than native cytokine genes.

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Figure 1: Sequences and genealogies of shuffled interferons.
Figure 2: Antiviral activities of native IFN-αs and an evolved IFN-α.
Figure 3: Summary of antiviral activities of native and evolved IFN-αs on murine L929 cells.
Figure 4: Structural modeling of IFN-CH2.2.

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Acknowledgements

We thank Peter Schultz, Mark Gallop, Eleanor Fish, Russell Howard, Jennifer Jones, Steve Bass, and Volker Heinrichs for critical reading of the manuscript. We thank Malcolm McGregor for assistance with the molecular graphics and Andreas Crameri for sharing unpublished DNA shuffling protocols.

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Correspondence to Phillip A. Patten.

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Chang, CC., Chen, T., Cox, B. et al. Evolution of a cytokine using DNA family shuffling. Nat Biotechnol 17, 793–797 (1999). https://doi.org/10.1038/11737

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  • DOI: https://doi.org/10.1038/11737

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