Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Research Article
  • Published:

DNA vector chemistry: The covalent attachment of signal peptides to plasmid DNA

Abstract

The nuclear entry of exogenous DNA in mammalian cells is critical for efficient gene transfer. A novel technique was developed for the covalent attachment of cationic peptides to double-stranded DNA using a cyclo-propapyrroloindole cross-linker. The attachment of the SV40 large T antigen nuclear localization signal peptide induced the nuclear accumulation of the conjugated DNA in digitonin-permeabilized cells via the classical pathway for the nuclear transport of karyophilic proteins. Increased nuclear uptake of the modified DNA, however, did not occur after it was microinjected into the cytoplasm of cultured cells. This demonstration that the covalent modification of DNA with a signal peptide alters its behavior and interaction with other cellular factors portends the potential of DNA vector chemistry to enhance the efficiency of cellular gene transfer.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Similar content being viewed by others

References

  1. Mirzayans, R., Remy, A.A., and Malcolm, P.C. 1992. Differential expression and stability of foreign genes introduced into human fibroblasts by nuclear versus cytoplasmic microinjection. Mut. Res. 281: 115–122.

    Article  CAS  Google Scholar 

  2. Dowty, M.E., Williams, P., Zhang, G. and Wolff, J.A. 1995. Plasmid DNA entry into post-mitotic nuclei of primary rat myotubes. Proc. Natl. Acad. Sci. USA 92: 4572–4576.

    Article  CAS  Google Scholar 

  3. Hagstrom, J.E., Ludtke, J.J., Bassik, M.C., Sebestyén, M.G., Adam, S.A., and Wolff, J.A. 1997. Nuclear import of DNA in digitonin-permeabilized cells. J. Cell Sci. 110: 2323–2331.

    CAS  PubMed  Google Scholar 

  4. Gorlich, D. and Mattaj, I.W. 1996. Nucleocytoplasmic transport. Science 271: 1513–1518.

    Article  CAS  Google Scholar 

  5. Jans, D.A. and Hubner, S. 1996. Regulation of protein transport to the nucleus: central role of phosphorylation. Physiol. Rev. 76: 651–685.

    Article  CAS  Google Scholar 

  6. Pante, N. and Aebi, U. 1996. Molecular dissection of the nuclear pore complex. Crit. Rev. Biochem. Mol. Biol. 31: 153–199.

    Article  CAS  Google Scholar 

  7. Goldfarb, D.S. 1997. Nuclear transport—proliferating pathways. Curr. Biol. 7:R13–R16.

    Article  CAS  Google Scholar 

  8. Kalderon, D., Roberts, B.L., Richardson, W.D., and Smith, A.E. 1984. A short amino acid sequence able to specify nuclear location. Cell 39: 499–509.

    Article  CAS  Google Scholar 

  9. Lanford, R.E., Kanda, P., and Kennedy, R.C. 1986. Induction of nuclear transport with a synthetic peptide homologous to the SV40 T antigen transport signal. Cell 46: 575–582.

    Article  CAS  Google Scholar 

  10. Goldfarb, D.S., Gariépy, J., Schoolnik, G., and Kornberg, R.D. 1986. Synthetic peptides as nuclear localization signals. BioEssays 322: 641–644.

    CAS  Google Scholar 

  11. Adam, S.A., Sterne-Marr, R. and Gerace, L. 1992. Nuclear protein import using digitonin-permeabilized cells. Methods Enzymol. 219: 97–111.

    Article  CAS  Google Scholar 

  12. Nigg, E. 1997. Nucleocytoplasmic transport: signals, mechanisms and regulation. Nature 386: 779–787.

    Article  CAS  Google Scholar 

  13. Pollard, V.W., Michael, W.M., Nakielny, S., Siomi, M.C., Wang, F., and Dreyfuss, G. 1996. A novel receptor-mediated nuclear protein import pathway. Cell 86: 985–994.

    Article  CAS  Google Scholar 

  14. Gallay, P., Stitt, V., Mundy, C., Oettinger, M., and Trono, D. 1996. Role of the karyopherin pathway in human immunodeficiency virus type 1 nuclear import. J. Virol. 70: 1027–1032.

    CAS  PubMed  PubMed Central  Google Scholar 

  15. Whittaker, G., Bui, M., and Helenius, A. 1996. The role of nuclear import and export in influenza virus infection. Trends Cell Biol. 6: 67–71.

    Article  CAS  Google Scholar 

  16. Kaneda, A., Iwai, K., and Uchida, T. 1989. Increased expression of DNA cointroduced with nuclear protein in adult rat liver. Science 243: 375–378.

    Article  CAS  Google Scholar 

  17. Fritz, F.D., Herweijer, H., Zhang, G., and Wolff, J.A. 1996. Gene transfer into mammalian cells using histone-condensed plasmid DNA. Hum. Gene Ther. 7: 1395–1404.

    Article  CAS  Google Scholar 

  18. Collas, P. and Alestrom, P. 1996. Nuclear localization signal of SV40 T antigen directs import of plasmid dna into sea urchin male pronuclei in vitro. Mol. Reprod. Dev. 45: 431–438.

    Article  CAS  Google Scholar 

  19. Hurley, L., Warpehoski, M., Lee, C., McGovern, J., Scahill, T., Kelly, R.C. et al. 1990. Sequence specificity of DNA alkylation by the unnatural enantiomer of CC-1065 and its synthetic analogues. J. Am. Chem. Soc. 112: 4633–4649.

    Article  CAS  Google Scholar 

  20. Boger, D.L. and Johnson, D.S. 1995. CC-1065 and the duocarmycins: unraveling the keys to a new class of naturally derived DNA alkylating agents. Proc. Natl. Acad. Sci. USA 92: 3642–3649.

    Article  CAS  Google Scholar 

  21. Lukhtanov, E., Kutyavin, I., Gom, V., Reed, M., Adams, A., Lucas, D.D., et al. 1997. Sequence and structure dependence of the hybridization-triggered reaction of oligonucleotides bearing conjugated cyclopropapyrroloindole. J. Am. Chem. Soc. 119: 6214–6225.

    Article  CAS  Google Scholar 

  22. Lukhtanov, E.A., Podyminogin, M.A., Kutyavin, I.V., Meyer, R.B., and Gamper, H.B. 1996. Rapid and efficient hybridization-triggered crosslinking within a DNA duplex by an oligodeoxyribonucleotide bearing a conjugated cyclopropapyrroloindole. Nucl. Acids Res. 24: 683–687.

    Article  CAS  Google Scholar 

  23. Hurley, L.H., Lee, C.S., McGovren, J.P., Warpehoski, M.A., Mitchell, M.A., Kelly, R.C., et al. 1988. Molecular basis for sequence-specific DNA alkylation by CC-1065. Biochemistry 27: 3886–3892.

    Article  CAS  Google Scholar 

  24. Sun, D. and Hurley, L.H., S. 1992. Effect of the (+)-CC-1065-(N3-adenine)DNA adduct on in vitro DNA synthesis mediated by Escherichia coli DNA polymerase. Biochemistry 31: 2822–2829.

    Article  CAS  Google Scholar 

  25. Seaman, F.C., Chu, J.X., and Hurley, L. 1996. Cross-linkage by intact bizelesin and bisalkylation by the separated halves of the bizelesin dimer—contrasting drug manipulation of DNA conformation (5′-taatta-3′) directs alkylation toward different adenine.targets. J. Am. Chem. Soc. 118: 7871.

    Article  CAS  Google Scholar 

  26. Adam, S.A., Marr, R.S. and Gerace, L. 1990. Nuclear protein import in permeabilized mammalian cells requires soluble cytoplasmic factors. J. Cell Biol. 111: 807–816.

    Article  CAS  Google Scholar 

  27. Adam, S.A. and Gerace, L. 1991. Cytosolic proteins that specifically bind nuclear location signals are receptors for nuclear import. Cell 66: 837–847.

    Article  CAS  Google Scholar 

  28. Gershon, H., Ghirlando, R., Guttman, S.B. and Minsky, A. 1993. Mode of formation and structural features of DNA-cationic liposome complexes used for transfection. Biochemistry 32; 7143–7151.

    Article  CAS  Google Scholar 

  29. Garcia-Ramirez, M. and Subirana, J.A. 1994. Condensation of DNA by basic proteins does not depend on protein composition. Biopolymers 34: 285–292.

    Article  CAS  Google Scholar 

  30. Ibanez, M., Gariglio, P., Chavez, P., Santiago, R., Wong, C., Baeza, I., et al. 1996. Spermidine condensed DNA and cone-shaped lipids improve delivery and expression of exogenous dna transfer by liposomes. Biochem, Cell Biol. 74: 633–643.

    Article  CAS  Google Scholar 

  31. Radu, A., Moore, M.S., and Blobel, G. 1995. The peptide repeat domain of nucleoporin Nup98 functions as a docking site in transport across the nuclear pore complex. Cell 81: 215–222.

    Article  CAS  Google Scholar 

  32. Moroianu, J., Blobel, G., and Radu, A. 1996. Nuclear protein import: Ran-GTP dissociates the karyopherin alphabeta heterodimer by displacing alpha from an overlapping binding site on beta. Proc, Natl. Acad. Sci. USA 93: 7059–7062.

    Article  CAS  Google Scholar 

  33. Dworetzky, S.I., Lanford, R.E., and Feldherr, C.M. 1988. The effects of variations in the number and sequence of targeting signals on nuclear uptake. J. Cell Biol. 107: 1279–1287.

    Article  CAS  Google Scholar 

  34. Yoneda, Y., Semba, T., Kaneda, Y., Noble, R.L., Matsuoka, Y., Kurihara, T., et al. 1992. A long synthetic peptide containing a nuclear localization signal and its flanking sequences of SV40 T-antigen directs the transport of IgM into the nucleus efficiently. Exp. Cell Res. 201; 313–320.

    Article  CAS  Google Scholar 

  35. Fishman, D.M. and Patterson, G.D. 1996. Light scattering studies of supercoiled and nicked DNA. Biopolymers 38: 535–552.

    Article  CAS  Google Scholar 

  36. Grineva, N., Knorre, D., and Kurbatov, V. 1971. Highly efficient alkylation of transport RNA by 4-(N-2-chloroethyl-N-methylamino)benzylamine. Doklady Akademii Nauk SSSR 201: 609–611.

    CAS  PubMed  Google Scholar 

  37. Dowty, M.E., Guervich, V., Berg, R.K., Repetto, G., and Wolff, J.A. 1992. Characterization of biotinylated and gold labeled plasmid DNA. Meth. Molec. Cell. Biol. 3: 167–174.

    Article  CAS  Google Scholar 

  38. Sambrook, J., Fritsch, E., and Maniatis, T. 1989. Molecular cloning: A laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring, NY.

    Google Scholar 

  39. de Wet, J.R., Wood, K.V., DeLuca, M., Helinski, D.R., and Subramani, S. 1987. Firefly luciferase gene: structure and expression in mammalian cells. Mol. Cell. Biol. 7: 725–737.

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Jon A. Wolff.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Sebestyén, M., Ludtke, J., Bassik, M. et al. DNA vector chemistry: The covalent attachment of signal peptides to plasmid DNA. Nat Biotechnol 16, 80–85 (1998). https://doi.org/10.1038/nbt0198-80

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1038/nbt0198-80

This article is cited by

Search

Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing