Structure and mechanism of the M2 proton channel of influenza A virus

Abstract

The integral membrane protein M2 of influenza virus forms pH-gated proton channels in the viral lipid envelope1. The low pH of an endosome activates the M2 channel before haemagglutinin-mediated fusion. Conductance of protons acidifies the viral interior and thereby facilitates dissociation of the matrix protein from the viral nucleoproteins—a required process for unpacking of the viral genome2. In addition to its role in release of viral nucleoproteins, M2 in the trans-Golgi network (TGN) membrane prevents premature conformational rearrangement of newly synthesized haemagglutinin during transport to the cell surface by equilibrating the pH of the TGN with that of the host cell cytoplasm3. Inhibiting the proton conductance of M2 using the anti-viral drug amantadine or rimantadine inhibits viral replication4,5,6,7. Here we present the structure of the tetrameric M2 channel in complex with rimantadine, determined by NMR. In the closed state, four tightly packed transmembrane helices define a narrow channel, in which a ‘tryptophan gate’ is locked by intermolecular interactions with aspartic acid. A carboxy-terminal, amphipathic helix oriented nearly perpendicular to the transmembrane helix forms an inward-facing base. Lowering the pH destabilizes the transmembrane helical packing and unlocks the gate, admitting water to conduct protons, whereas the C-terminal base remains intact, preventing dissociation of the tetramer. Rimantadine binds at four equivalent sites near the gate on the lipid-facing side of the channel and stabilizes the closed conformation of the pore. Drug-resistance mutations are predicted to counter the effect of drug binding by either increasing the hydrophilicity of the pore or weakening helix–helix packing, thus facilitating channel opening.

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Figure 1: Structure of the M2 channel.
Figure 2: Water accessibility of the M2 channel.
Figure 3: Low-pH-induced destabilization of the channel and opening of the Trp 41 gate.
Figure 4: Schematic illustration of M2 channel activation.

Accession codes

Primary accessions

Protein Data Bank

Data deposits

The structures have been deposited in the Protein Data Bank under the accession number 2RLF.

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Acknowledgements

We thank M. Berardi for many discussions, and S. Harrison for discussion and assisting with the manuscript. This work was supported by the NIH and the Pew Scholars Program in the Biomedical Sciences awarded to J.J.C. J.R.S. is supported by an NIH F32 postdoctoral fellowship.

Author Contributions J.R.S. and J.J.C. designed research, performed research, analysed data and wrote the paper.

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Correspondence to James J. Chou.

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J.J.C. and J.R.S. declare competing financial interests. A provisional patent entitled ‘Systems and Methods for Studying Influenza’ was filed on 25 October 2007 on behalf of Harvard Medical School by Wolf, Greenfield & Sacks, P.C.

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The file contains Supplementary Methods, Supplementary Tables S1-S2, Supplementary Figures S1-S7 with Legends and additional references. (PDF 661 kb)

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Schnell, J., Chou, J. Structure and mechanism of the M2 proton channel of influenza A virus. Nature 451, 591–595 (2008). https://doi.org/10.1038/nature06531

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