Fersht, A. R.
Structure and Mechanism in Protein Science: a Guide to Enzyme Catalysis and Protein Folding (Freeman & Co, New York, 1999)
Schreiber, G. & Fersht, A. R.
Rapid electrostatically assisted association of proteins. Nature Struct. Biol.
3, 427–431 (1996)
Electrostatic enhancement of diffusion-controlled protein–protein association: comparison of theory and experiment on barnase and barstar. J. Mol. Biol.
278, 1015–1024 (1998)
Selzer, T., Albeck, S. & Schreiber, G.
Rational design of faster associating and tighter binding protein complexes. Nature Struct. Biol.
7, 537–541 (2000)
Northrup, S. H., Boles, J. O. & Reynolds, J. C. L.
Brownian dynamics of cytochrome c and cytochrome c peroxidase association. Science
241, 67–70 (1988)
Gabdoulline, R. R. & Wade, R. C.
Biomolecular diffusional association. Curr. Opin. Struct. Biol.
12, 204–213 (2002)
Spaar, A., Dammer, C., Gabdoulline, R. R., Wade, R. C. & Helms, V.
Diffusional encounter of barnase and barstar. Biophys. J.
90, 1913–1924 (2006)
Adams, G. & Debruck, M. in Structural Chemistry and Molecular Biology (eds Rich, A. & Davidson, N.) 198–215 (Freeman & Co, San Francisco, CA, 1968)
Zhou, H-X. & Szabo, A.
Enhancement of association rates by nonspecific binding to DNA and cell membranes. Phys. Rev. Lett.
93, 178101 (2004)
Garrett, D. S., Seok, Y-J., Peterkofsky, A., Gronenborn, A. M. & Clore, G. M.
Solution structure of the 40,000 M
r phosphoryl transfer complex between the N-terminal domain of enzyme I and HPr. Nature Struct. Biol.
6, 166–173 (1999)
Postma, P. W., Lengeler, J. W. & Jacobson, G. R. in Escherichia coli and Salmonella: Cellular and Molecular Biology (ed. Neidhardt, F. C.) 1149–1174 (ASM, Washington DC, 1996)
Iwahara, J. & Clore, G. M.
Detecting transient intermediates in macromolecular binding by paramagnetic NMR. Nature
440, 1227–1230 (2006)
Iwahara, J., Schwieters, C. D. & Clore, G. M.
Characterization of nonspecific protein–DNA interactions by 1H paramagnetic relaxation enhancement. J. Am. Chem. Soc.
126, 12800–12808 (2004)
Ebright, Y. W., Chen, Y., Pendergrast, P. S. & Ebright, R. H.
Incorporation of an EDTA–metal complex at a rationally selected site within a protein: application to EDTA–iron DNA affinity cleaving with catabolite gene activator protein (CAP) and Cro. Biochemistry
31, 10664–10670 (1992)
Iwahara, J., Schwieters, C. D. & Clore, G. M.
Ensemble approach for NMR structure refinement against 1H paramagnetic relaxation enhancement data arising from a flexible paramagnetic group attached to a macromolecules. J. Am. Chem. Soc.
126, 5879–5896 (2004)
Donaldson, L. W.
Structural characterization of proteins with an attached ATCUN motif by paramagnetic relaxation enhancement NMR spectroscopy. J. Am. Chem. Soc.
123, 9843–9847 (2001)
Pintacuda, G. & Otting, G.
Identification of protein surfaces by NMR measurements with a paramagnetic Gd(iii) chelate. J. Am. Chem. Soc.
124, 372–373 (2002)
Schwieters, C. D., Kuszewski, J. J. & Clore, G. M.
Using Xplor-NIH for NMR molecular structure determination. Prog. NMR Spectrosc.
48, 47–62 (2006)
Brünger, A. T., Clore, G. M., Gronenborn, A. M. & Nilges, M.
Assessing the quality of solution nuclear magnetic resonance structures by complete cross-validation. Science
261, 328–331 (1993)
Schwieters, C. D. & Clore, G. M.
Reweighted atomic densities to represent ensembles of NMR structures. J. Biomol. NMR
23, 221–225 (2002)
Baker, N. A., Sept, D., Joseph, S., Holst, M. J. & McCammon, J. A.
Electrostatics of nanosystems: application to microtubules and the ribosome. Proc. Natl Acad. Sci. USA
98, 10037–10041 (2001)
Jones, S. & Thornton, J. M.
principles of protein–protein interactions. Proc. Natl Acad. Sci. USA
93, 13–20 (1996)
Solution structure of the phosphoryl transfer complex between the cytoplasmic A domain of the mannitol transporter IIMannitol and HPr of the Eschrichia coli phosphotransferase system. J. Biol. Chem.
277, 42289–42298 (2002)
Williams, D. C., Cai, M., Suh, Y-J., Peterkofsky, A. & Clore, G. M.
Solution NMR structure of the 48 kDa IIAMannose–HPr complex of the Escherichia coli mannose phosphotransferase system. J. Biol. Chem.
280, 20775–20784 (2005)
Nilges, M., Gronenborn, A. M., Brünger, A. T. & Clore, G. M.
Determination of three-dimensional structures of proteins by simulated annealing with interproton distance restraints: application to crambin, potato carboxypeptidase inhibitor and barley serine proteinase inhibitor 2. Protein Eng.
2, 27–38 (1988)
Kuszewski, J., Gronenborn, A. M. & Clore, G. M.
Improving the packing and accuracy of NMR structures with a pseudopotential for the radius of gyration. J. Am. Chem. Soc.
121, 2337–2338 (1999)
DeLano, W. L. The PyMOL Molecular Graphics System (DeLano Scientific, San Carlos, CA, USA, 2002)
Laskowski, R. A.
SURFNET: a program for visualizing molecular surfaces, cavities and intermolecular interactions. J. Mol. Graph.
13, 323–330 (1995)