Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Letter
  • Published:

Two-step binding mechanism for T-cell receptor recognition of peptide–MHC

Abstract

T cells probe a diverse milieu of peptides presented by molecules of the major histocompatibility complex (MHC) by using the T-cell receptor (TCR) to scan these ligands with high sensitivity and specificity1. Here we describe a physical basis for this scanning process by studying the residues involved in both the initial association and the stable binding of TCR to peptide–MHC, using the well-characterized TCR and peptide–MHC pair of 2B4 and MCC-IEk (moth cytochrome c, residues 88–103)2. We show that MHC contacts dictate the initial association, guiding TCR docking in a way that is mainly independent of the peptide. Subsequently, MCC-IEk peptide contacts dominate stabilization, imparting specificity and influencing T-cell activation by modulating the duration of binding. This functional subdivision of the peptide–MHC ligand suggests that a two-step process for TCR recognition facilitates the efficient scanning of diverse peptide–MHC complexes on the surface of cells and also makes TCRs inherently crossreactive towards different peptides bound by the same MHC.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Figure 1: Binding of 2B4 TCR to wild-type MCC-IEk and selected point mutants in the peptide–MHC epitope, monitored by surface plasmon resonance (BIAcore).
Figure 2: Structures of MCC-IEk, showing the amino acid residues mutated in this study and their effects on TCR complex stability and association.
Figure 3: Model for TCR sampling of peptide–MHC (pMHC), showing formation of specific MHC and peptide contacts during the course of the binding reaction.

Similar content being viewed by others

References

  1. Germain, R. N. & Stefanova, I. The dynamics of T cell receptor signalling: complex orchestration and the key roles of tempo and cooperation. Annu. Rev. Immunol. 17, 467–522 (1999)

    Article  CAS  Google Scholar 

  2. Davis, M. M. et al. Ligand recognition by αβ T cell receptors. Annu. Rev. Immunol. 16, 523–544 (1998)

    Article  ADS  MathSciNet  CAS  Google Scholar 

  3. Rudolph, M. G. & Wilson, I. A. The specificity of TCR/pMHC interaction. Curr. Opin. Immunol. 14, 52–65 (2002)

    Article  CAS  Google Scholar 

  4. Fremont, D. H. et al. Structural basis of cytochrome c presentation by IEk. J. Exp. Med. 195, 1043–1052 (2002)

    Article  CAS  Google Scholar 

  5. Baker, B. M., Turner, R. V., Gagnon, S. J., Wiley, D. C. & Biddison, W. E. Identification of a crucial energetic footprint on the α1 helix of human histocompatibility leukocyte antigen (HLA)-A2 that provides functional interactions for recognition by Tax peptide/HLA-A2-specific T cell receptors. J. Exp. Med. 193, 551–562 (2001)

    Article  CAS  Google Scholar 

  6. Ehrich, E. W. et al. T cell receptor interactions with peptide/major histocompatibility complex (MHC) and superantigen/MHC ligands is dominated by antigen. J. Exp. Med. 178, 713–722 (1993)

    Article  CAS  Google Scholar 

  7. Reay, P., Kantor, R. M. & Davis, M. M. Use of global amino acid replacements to define the requirements for MHC binding and T cell recognition of moth cytochrome c (93–103). J. Immunol. 152, 3946–3957 (1994)

    CAS  PubMed  Google Scholar 

  8. Manning, T. C. et al. Alanine scanning mutagenesis of an αβ T cell receptor: mapping the energy of antigen recognition. Immunity 8, 413–425 (1998)

    Article  CAS  Google Scholar 

  9. Lee, P. U., Churchill, H. R., Daniels, M., Jameson, S. C. & Kranz, D. M. Role of 2C T cell receptor residues in the binding of self- and allo-major histocompatibility complexes. J. Exp. Med. 191, 1355–1364 (2000)

    Article  CAS  Google Scholar 

  10. Degano, M. et al. A functional hot spot for antigen recognition in a superagonist TCR/MHC complex. Immunity 12, 251–261 (2000)

    Article  CAS  Google Scholar 

  11. Garcia, K. C. et al. Structural basis of plasticity in T cell receptor recognition of a self peptide–MHC antigen. Science 279, 1166–1172 (1998)

    Article  ADS  CAS  Google Scholar 

  12. Kersh, G. J., Kersh, E. N., Fremont, D. H. & Allen, P. M. High- and low-potency ligands with similar affinities for the TCR: the importance of kinetics in TCR signaling. Immunity 9, 817–826 (1998)

    Article  CAS  Google Scholar 

  13. Baker, B. M., Ding, Y.-H., Garboczi, D. N., Biddison, W. E. & Wiley, D. C. Structural, biochemical, and biophysical studies of HLA-A2/altered peptide ligands binding to viral-peptide-specific human T-cell receptors. Cold Spring Harb. Symp. Quant. Biol. 64, 235–241 (1999)

    Article  CAS  Google Scholar 

  14. Fersht, A. R. Nucleation steps in protein folding. Curr. Opin. Struct. Biol. 7, 3–9 (1997)

    Article  CAS  Google Scholar 

  15. Schreiber, G. & Fersht, A. R. Rapid electrostatically assisted association of proteins. Nature Struct. Biol. 3, 427–431 (1996)

    Article  CAS  Google Scholar 

  16. Davis, S. J., Davies, E. A., Tucknott, M. G., Jones, E. Y. & van der Merwe, P. A. The role of charged residues mediating low affinity protein-protein recognition at the cell surface by CD2. Proc. Natl Acad. Sci. USA 95, 5490–5494 (1998)

    Article  ADS  CAS  Google Scholar 

  17. Hare, B. J. et al. Structure, specificity, and CDR mobility of a class II restricted single-chain T cell receptor. Nature Struct. Biol. 6, 574–581 (1999)

    Article  CAS  Google Scholar 

  18. Reiser, J. B. et al. A T cell receptor CDR3β loop undergoes conformational changes of unprecedented magnitude upon binding to a peptide/MHC class I complex. Immunity 16, 345–354 (2002)

    Article  CAS  Google Scholar 

  19. Boniface, J. J., Reich, Z., Lyons, D. S. & Davis, M. M. Thermodynamics of T cell receptor binding to peptide-MHC: evidence for a general mechanism of molecular scanning. Proc. Natl Acad. Sci. USA 96, 11446–11451 (1999)

    Article  ADS  CAS  Google Scholar 

  20. Willcox, B. E. et al. TCR binding to peptide-MHC stabilizes a flexible recognition interface. Immunity 10, 357–365 (1999)

    Article  CAS  Google Scholar 

  21. Mason, D. A very high level of cross-reactivity is an essential feature of the T-cell receptor. Immunol. Today 19, 395–404 (1998)

    Article  CAS  Google Scholar 

  22. Clackson, T. & Wells, J. A. A hot spot of binding energy in a hormone-receptor interface. Science 267, 383–386 (1995)

    Article  ADS  CAS  Google Scholar 

  23. Bevan, M. J. In a radiation chimaera, host H-2 antigens determine immune responsiveness of donor cytotoxic cells. Nature 269, 417–418 (1977)

    Article  ADS  CAS  Google Scholar 

  24. Zinkernagel, R. M. et al. On the thymus in the differentiation of ‘H-2 self-recognition’ by T cells: evidence for dual recognition? J. Exp. Med. 147, 882–896 (1978)

    Article  CAS  Google Scholar 

  25. Zerrahn, J., Held, W. & Raulet, D. H. The MHC reactivity of the T cell repertoire prior to positive and negative selection. Cell 88, 627–636 (1997)

    Article  CAS  Google Scholar 

  26. Hennecke, J. & Wiley, D. C. Structure of a complex of the human α/β T cell receptor (TCR) HA1. (7), influenze hemagglutinin peptide, and major histocompatibility complex class II molecule, HLA-DR4 (DRA*0101 and DRB1*0401): insight into TCR cross-restriction and alloreactivity. J. Exp. Med. 195, 571–581 (2002)

    Article  CAS  Google Scholar 

  27. Luz, J. G. et al. Structural comparison of allogeneic and syngeneic T cell receptor-peptide-major histocompatibility complex complexes: a buried alloreactive mutation subtly alters peptide presentation substantially increasing Vβ interactions. J. Exp. Med. 195, 1175–1186 (2002)

    Article  CAS  Google Scholar 

  28. Savage, P. A. & Davis, M. M. A kinetic window constricts the T cell receptor repertoire in the thymus. Immunity 14, 243–252 (2001)

    Article  CAS  Google Scholar 

  29. Tanchot, C., Lemonnier, F. A., Pérarnau, B., Freitas, A. A. & Rocha, B. Differential requirements for survival and proliferation of CD8 naïve or memory T cells. Science 276, 2057–2058 (1997)

    Article  CAS  Google Scholar 

  30. Kraulis, P. J. MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J. Appl. Crystallogr. 24, 946–950 (1991)

    Article  Google Scholar 

Download references

Acknowledgements

We thank J. Boniface, C. Gerke, S. Hedrick, D. Herschlag, J. Huppa, M. Krogsgaard, M. Kuhns, Z. Reich, R. Sciammas and members of the Davis lab for discussions and comments on the manuscript; B. Malissen and D. Fremont for communicating results before publication; N. Prado for assistance with TCR production; and A. Cochran and H. Lowman for use of their BIAcore 2000. L.C.W. is a postdoctoral fellow of the Cancer Research Fund of the Damon Runyon Walter Winchell Foundation. D.S.L. was a Howard Hughes Medical Institute predoctoral fellow. This work was supported by the NIH (M.M.D. and K.C.G.), the Howard Hughes Medical Institute (M.M.D.), the Multiple Sclerosis Society (K.C.G.), and the Cancer Research Institute (K.C.G.).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Mark M. Davis.

Ethics declarations

Competing interests

The authors declare that they have no competing financial interests.

Supplementary information

Rights and permissions

Reprints and permissions

About this article

Cite this article

Wu, L., Tuot, D., Lyons, D. et al. Two-step binding mechanism for T-cell receptor recognition of peptide–MHC. Nature 418, 552–556 (2002). https://doi.org/10.1038/nature00920

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1038/nature00920

This article is cited by

Comments

By submitting a comment you agree to abide by our Terms and Community Guidelines. If you find something abusive or that does not comply with our terms or guidelines please flag it as inappropriate.

Search

Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing