Abstract
Intestinal dendritic cells (DCs) continuously migrate through lymphatics to mesenteric lymph nodes where they initiate immunity or tolerance. Recent research has focused on populations of intestinal DCs expressing CD103. Here we demonstrate, for the first time, the presence of two distinct CD103− DC subsets in intestinal lymph. Similar to CD103+ DCs, these intestine-derived CD103− DCs are responsive to Flt3 and they efficiently prime and confer a gut-homing phenotype to naive T cells. However, uniquely among intestinal DCs, CD103− CD11b+ CX3CR1int lymph DCs induce the differentiation of both interferon-γ and interleukin-17-producing effector T cells, even in the absence of overt stimulation. Priming by CD103− CD11b+ DCs represents a novel mechanism for the rapid generation of effector T-cell responses in the gut. Therefore, these cells may prove to be valuable targets for the treatment of intestinal inflammation or in the development of effective oral vaccines.
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Introduction
Dendritic cells (DCs) have a crucial role in maintaining the delicate balance between immunity and tolerance in the intestine. They migrate from the intestine, through lymphatics, to the mesenteric lymph nodes (MLNs) and prime the differentiation of naive T lymphocytes into regulatory or effector cells. Understanding the functions of intestinal DCs is crucial for the development of oral vaccines and the treatment of inflammatory bowel disease. However, the precise identification of intestinal DCs is hindered by several factors. First, isolation of cells from the intestinal lamina propria (LP) necessitates mechanical and enzymatic disruption of tissue, which could alter the phenotype of isolated cells and may preferentially purify particular cell types.1 Second, macrophages share many phenotypic characteristics with DCs, rendering surface marker expression alone inappropriate for unequivocal identification of DC populations. Importantly, intestinal macrophages do not migrate from the intestine to MLNs but remain in the LP, where they maintain and amplify the effector functions of T cells that migrate to the LP after being primed in the MLNs.2
Recently, a subset of CD103 (integrin αE)-expressing CD11c+ MHCII+ (major histocompatibility complex II) LP cells has generated substantial interest. These CD103+ LP cells are likely to represent bona fide DCs as they develop independently of M-CSF (macrophage colony-stimulating factor) but expand in response to fms-like tyrosine kinase 3 ligand (Flt3L) and granulocyte M-CSF.3, 4 CD103+ LP DCs express CCR7, and cells of a similar phenotype and function are present in the MLN. CD103+ DCs from both the LP and the MLN induce differentiation of naive CD4+ T cells into FoxP3+ regulatory T cells,5, 6 and drive responding T cells to express the gut-homing molecules CCR9 and α4β7.7
Intestinal CD103+ DCs are a heterogeneous population of cells and can be divided into two functionally distinct subsets: CD11b+ CD8α− and CD11b− CD8α+.8, 9 The CD8α+ DCs represent a smaller subset of LP DCs,3, 9 and it is currently not clear whether they migrate in lymph or contribute to priming of naive cells in the MLN.10
In contrast to CD103+DCs, CD103− DCs in the MLN are reported to have a more immunogenic phenotype in both the steady state5 and in inflammation.11 However, these CD103− MLN DCs are thought to originate from the blood and not from the intestine. Whether any CD103− DCs migrate from the LP to the MLN, and the role they may have in the induction of immune responses is currently a matter of controversy. The majority of CD11c+ MHCII+ CD103− LP cells express high levels of the chemokine receptor CX3CR1 and, while they have been referred to as DCs,3, 12 several lines of evidence have called this classification into question. Small intestinal (SI) LP CX3CR1hi CD103− cells express F4/80,4 develop from monocytes in an M-CSF-dependent manner3 and, crucially, are absent from afferent intestinal lymph.4 On balance, it is likely that these CD11c+ MHCII+ CX3CR1hi cells represent intestinal macrophages.13
Although CD103− DCs are commonly found in peripheral tissues, it is not clear whether there are any bona fide CD103− DCs in the intestinal LP.14 Intriguingly, a population of MHCIIhi CD11c+ cells expressing intermediate levels of CX3CR1 appears distinct from CX3CR1hi macrophages. These cells are phenotypically heterogeneous and their exact functions remain unclear.4, 15 Although the majority appear to have the phenotypic and functional properties characteristic of inflammatory macrophages,16 some may also share the Flt3-dependent ontogeny characteristic of DCs.4
Here, we have used a novel approach to define intestinal DCs based on their ability to migrate in steady-state intestinal lymph. We are therefore able to offer a definitive and comprehensive characterization of the phenotype and function of all intestine-derived, lymph-borne DCs (LDCs). We show that, in addition to CD103+ DCs, two distinct subsets of CD103− DCs constitutively migrate to the MLN. Furthermore, these CD103− DCs have Flt3-dependent ontogeny, are highly effective antigen-presenting cells, and can confer gut tropism to naive T cells. Notably, in contrast to the CD103+-migrating DCs, CD103− intestinal LDCs induce differentiation of interferon (IFN)-γ- and interleukin (IL)-17-producing effector T cells.
Results
Intestinal CD103+ CD8α+, CD103+ CD11b+, and CD103− DCs migrate in lymph
A fundamental and defining feature of intestinal DCs is that they are able to migrate from the intestinal LP to the MLN through the intestinal lymphatics. We have adapted techniques previously used in rats17 and mice18, 19 to isolate migrating intestinal DCs from murine thoracic duct lymph.20 Unlike direct isolation of cells from afferent mouse intestinal lymphatics,4 thoracic duct cannulation yields sufficient numbers of cells for direct functional analyses of purified DC subsets, and allows the collection of all MLN-bound DCs over a period of time. Very few, if any, DCs migrate from lymph nodes via efferent lymphatics and the thoracic duct lymph of normal mice is largely devoid of CD11c+ cells (Figure 1a). Six weeks after mesenteric lymphadenectomy (MLNx), the re-anastomosis of lymphatics allows “pseudo-afferent lymph” DCs to migrate from the intestine into the thoracic duct. Thoracic duct lymph from mice after mesenteric lymphadenectomy, therefore, contains a distinct population of CD11c+ MHCIIhi cells, (Figure 1a) which represent DCs migrating from the intestine to the MLN.
Our analysis of these intestinal LDCs revealed a heterogeneous population of cells comprising at least three subsets, based on their expression of CD103, CD11b, and CD8α (Figure 1b,c). As expected, the majority of LDCs expressed CD103; these could be split into two subsets: CD103+ CD11b+ CD8α− (described as “CD103+ CD11b+” herein) and CD103+ CD11b− CD8α+ (“CD103+ CD8α+”). A smaller subset (14.2±4.2%) of migrating DCs did not express CD103 (Figure 1b,c). The three LDC subsets had distinct morphology. Although the CD103+ CD8α+ LDCs displayed prominent “spiny” dendrites, the CD103− and CD103+ CD11b+ LDCs had ruffled cell membranes, with shorter, more evenly-spaced protrusions (Figure 1d). The expression of CD172a (SIRPα) has been used to identify DC subsets in many mammalian species.20 Here, we observed uniformly high levels of CD172a expression on CD103+ CD11b+ LDCs and the majority of CD103− LDCs. By contrast, CD8α expression was confined to CD103+ CD11b− CD8α+ LDCs. CD4 was expressed at similarly low levels on all three LDC subsets (Figure 1e). None of the LDCs expressed the pDC-specific marker plasmacytoid dendritic cell antigen 1 (PDCA-1) (Figure 1e), confirming that pDCs do not migrate from rodent intestinal mucosa.21 Interestingly, both the CD103− DCs and the CD103+ CD11b+ LDCs expressed low levels of F4/80 (Figure 1e). CD103+ CD11b+ LDCs also expressed low levels of Siglec F (Figure 1e), normally considered an eosinophil-specific marker.22 However, their morphological characteristics and high levels of MHCII expression clearly mark LDCs as distinct from eosinophils. All three subsets of LDCs had a surface phenotype previously described as “semi-mature”,23 expressing high levels of surface MHCII but low levels of the costimulatory molecules CD40, CD80, and CD86 (Figure 1e).
CD103− LDCs efficiently prime CD4+ and CD8+ naive T cells
Our analysis of lymph cells revealed the presence of a significant number of CD103− cells, which possess the phenotypic and migratory hallmarks of DCs. We next examined whether migratory CD103− cells possessed the other defining property of DCs, the ability to present antigen to naive T cells. To do this, the three subsets of LDCs were sorted, pulsed with ovalbumin, and co-cultured with CFSE (carboxyfluorescein succinimidyl ester)-labeled, naive OVA-specific OT-1 (CD8+) or OT-2 (CD4+) TCR-transgenic T cells. As expected, CD103+ LDCs could induce antigen-specific proliferation of T cells, although they differed markedly in their ability to present antigen to CD4+ and CD8+ T cells. Although CD103+ CD11b+ LDCs were more efficient than CD103+ CD8α+ LDCs at inducing proliferation of naive CD4+ T cells (Figure 2a,b), CD103+ CD11b+ LDCs were less effective than CD103+ CD8α+ LDCs at cross-presenting antigen to naive CD8+ T cells, especially at lower DC:T cell ratios (Figure 2c,d). Unexpectedly, the CD103− LDCs were better at inducing proliferation of antigen-specific naive CD4+ T cells than either CD103+ LDC subset, and were almost as efficient as CD8α+ DCs at cross-presentation (Figure 2a–d). Therefore, their priming efficiency, as well as their migration pattern unambiguously identifies CD103− LDCs as bona fide DCs.
LDC subsets express aldehyde dehydrogenase and induce CCR9 expression on proliferating T cells
These data indicate that although CD103− LDCs comprise a relatively small proportion of migrating DCs, they may have a significant effect on the T-cell response initiated in the MLN. We therefore explored their effects on the functional differentiation of naive T cells in vitro. A hallmark of CD103+ DCs from the LP and MLN is that they confer a gut-homing phenotype on interacting T cells, by virtue of their ability to metabolize dietary vitamin A into retinoic acid.7, 24 We examined LDCs for the activity of aldehyde dehydrogenase, an enzyme required for retinoic acid generation, as measured by the fluorescence of the ALDEFLUOR substrate. All three subsets of intestinal LDCs exhibited high levels of aldehyde dehydrogenase activity, which was blocked by the specific inhibitor diethylaminobenzoaldehyde (Figure 3a,b). Moreover, when cultured with antigen-specific naive CD8+ T cells, all three LDC subsets were able to induce CCR9 expression on dividing T cells (Figure 3c). Therefore, the CD103− and CD103+ intestinal LDC populations share the ability to confer gut tropism to differentiating T cells.
CD103− LDCs induce differentiation of IFN-γ- and IL-17-producing T cells
To further investigate the functions of LDC subsets, we compared their ability to drive naive CD4+ and CD8+ T cells to adopt an effector phenotype. As expected, both CD4+ and CD8+ T cells primed with either subset of CD103+ LDCs produced little or no IFN-γ or IL-17 (Figure 4a,b) and low levels of IL-10 or IL-4 (data not shown). However, IFN-γ production from CD8+ T cells was enhanced if the CD103+ LDCs were first stimulated with bacterial lipoprotein, a Toll-like receptor 2 agonist (Figure 4b). Bacterial lipoprotein–stimulated CD103+ LDCs also induced increased T-cell proliferation, compared with unstimulated LDCs (data not shown).
In marked contrast to both CD103+ LDC subsets, steady-state CD103− DCs induced both CD4+ and CD8+ T cells to produce high concentrations of IFN-γ, even in the absence of overt stimulation (Figure 4a,b). Furthermore, CD103− LDCs were the only LDCs to induce IL-17 production by both OT-1 and OT-2 cells. Freshly isolated LDC subsets expressed very low mRNA levels of IL-12 and IL-23 subunits (data not shown); however, when cultured with an agonistic anti-CD40 antibody to mimic their interaction with cognate T cells, CD103− LDCs expressed at least 10-fold more mRNA for IL-12p40, IL-12p35, and IL-23p19, (Figure 4c). These data strongly suggest that expression of these cytokines confers the CD103− LDCs with their capacity to drive immunogenic T-cell differentiation.
All LDC populations expressed very low levels of the IL-10 mRNA, even after culture with the anti-CD40 antibody (data now shown), in contrast to the intestinal macrophage populations.25
CD103− DCs comprise two distinct subsets in steady-state lymph and SI LP
Having identified CD103− LDCs as a novel migratory population of intestinal DCs, we sought to identify cells with a similar phenotype in the intestinal LP of CX3CR1gfp/+ mice.26 Having first excluded macrophages based on their distinct (MHCII+ F4/80hi CX3CR1hi) phenotype (MΦ; Figure 5a), we were able to identify DC subsets similar to those in lymph (Figure 5a, see Supplementary Figure S1 online). In both lymph and LP, CD103+ DCs were CX3CR1− (P3, P4; Figure 5b). By contrast, the CD103− DC population in both sites was heterogeneous for CX3CR1, and could be divided into CD103− CD11b− CX3CR1− (P1) and CD103− CD11b+ CX3CR1+ (P2) populations (Figure 5a,b). The majority of CD103− CD11b+ DCs expressed CX3CR1 at similar levels to the previously described CX3CR1int LP-cell population and notably lower than the CX3CR1hi macrophages (Figure 5b).4, 15 Importantly, all four LP DC populations, including both CD103− and both CD103+ subsets, expressed similar levels of CCR7 mRNA, which was almost 10-fold higher than that found in LP macrophages (Figure 5c). All LP DC populations expressed very low levels of IL-10 mRNA (data not shown).
In order to gain a better understating of the biology of these phenotypically distinct, migrating DC subsets, we next examined their anatomical origins in the intestine. To do this, we made use of RORγt−/− mice, which lack all secondary lymphoid tissues except the spleen and so are devoid of Peyer's patches, and isolated lymphoid follicles.27 Despite previous reports that CD103+ CD11b− CD8α+ DCs mainly originate in the intestinal lymphoid tissues,10 they comprise a normal proportion of LDCs and are present in normal numbers in the LP of RORγt−/− mice (Figure 5d). Similarly, the CD103+ CD11b+ and CD103− CD11b+ populations were unchanged in RORγt−/− mice (Figure 5d). By contrast, the CD103− CD11b− population was significantly reduced in the lymph and LP of RORγt−/− mice (Figure 5d), indicating that the majority of these DCs may derive from organized intestinal lymphoid tissues, and not from the LP.
To ascertain whether both CD103− subpopulations contribute to the priming of effector CD4+ T cells, they were sorted and incubated with ovalbumin and naive OT-II T cells. Analysis of the supernatants revealed that both CD103− LDC subsets induced IL-17 production from the OT-II T cells; however, the capacity to induce IFN-γ production was confined to the CD103− CD11b+ subset of LDCs (Figure 5e). As before, neither of the CD103+ subsets could stimulate production of either IFN-γ or IL-17.
CD103− DCs in the SI LP and intestinal lymph expand in response to Flt3L
To address the ontogeny of LDC subsets, mice were treated with recombinant Flt3L for 9 days before cannulation of the thoracic duct. This led to a significant increase in the frequency of all four DC subsets, both in the lymph (Figure 6a) and the SI LP (Figure 6b), but had no effect on F4/80hi MHCIhi LP macrophages (Figure 6b). These results support previous work showing the selective effect of Flt3L on SI LP CD103+ DCs and CD103− DCs but not the CX3CR1hi macrophages.4 PCR analysis of growth factor receptor expression confirmed these findings by showing that all four subsets of LP DCs expressed 100-fold more Flt3 mRNA than LP macrophages (Figure 6c). By contrast, LP DCs expressed at least 10-fold less colony-stimulating factor 1 receptor mRNA than macrophages. Taken together, these experiments offer further evidence that the migrating CD103− cells we identified represent genuine DCs, detectable in the steady-state lymph and LP.
Discussion
Intestinal DCs and macrophages share a number of phenotypic and functional features, which has made the elucidation of their respective roles in the initiation of peripheral tolerance and induction of immune responses challenging.1 However, an important functional distinguishing feature of DCs is their ability to migrate in lymph to the draining MLNs. Here, we sought to examine the phenotype and function of mouse intestinal DCs by direct examination of CD11c+ MHCII+ cells in intestinal pseudo-afferent lymph. Our studies revealed the existence of three distinct subset of migrating DCs: CD103+ CD11b+, CD103+ CD8α+, and CD103−. These findings are novel and surprising for a number of reasons. First, while CD103+ CD11b+ DCs make up the majority of CD103+ LP DCs in the small intestine and their migration to the MLN has been well documented,3, 8, 10 the fate of CD103+ CD8α+ DCs is less clear. Although a distinct subset of CD103+ LP DCs has recently been shown to express CD8α,9 and fewer CD8α+ DCs are found in the MLNs of CCR7−/− mice,28 CD8α+ DC are generally thought to reside mostly within secondary lymphoid organs and not to migrate in lymph.10 To our knowledge, the data shown here represent the first definitive evidence that CD103+ CD8α+ DCs constitutively migrate from the intestine to the MLN.
Moreover, the CD103+ CD11b− CD8α+ DCs were present in normal numbers in the lymph and LP of RORγt−/− mice, which lack Peyer's patches and isolated lymphoid follicles, indicating that the majority of these DCs derive from the LP of the conventional villus mucosa. The CD8α+ LDCs were especially effective at cross-presentation to CD8+ T cells, and far less effective at priming CD4+ T cells than CD8α− LDCs. Similar specialization of CD8α+ and CD8α− DCs has been described in other tissues, including the SI LP.8, 9
Our second important finding was of a significant number of CD103− DCs in intestinal lymph, suggesting that CD103 cannot be used as a de-facto marker of migratory intestinal DCs in MLN, as has become convention.4, 5, 9, 24 Although CD103− cells make up the majority of CD11chi MHCII+ cells in the LP, the only previous study of afferent intestinal lymph detected exiguous numbers of these cells,4 and hence, they are generally considered to be sessile intestinal macrophages.13 Despite sharing some phenotypic characteristics of macrophages, including the expression of the fractalkine receptor CX3CR1, CD103− LDCs are bona fide DCs; they are highly efficient at priming naive T cells and continuously migrate from tissue to draining LNs. Crucially, cells with the same surface phenotype are present in the SI LP and express high levels of CCR7 mRNA (Figure 5).
Furthermore, these intestine-derived CD103− DCs share important functional and phenotypic properties with CD103+ LDCs. All LDC subsets were able to present antigen to naive T cells and induce CCR9 expression of dividing T cells. Importantly, CD103− DCs comprise two distinct subsets, separated by their expression of CD11b and CX3CR1, and by their distinct anatomical origins. CD103− CD11b+ CX3CR1int DCs are present in normal numbers in RORγt−/− mice, indicating that they mainly reside in the villus LP. Conversely, the CD103− CD11b− CX3CR1− DCs are absent from the intestine of RORγt−/− mice and are therefore likely to mainly derive from the organized intestinal lymphoid tissues such as the Peyer's patches and isolated lymphoid follicles.
Crucially, cells of a similar phenotype to all four LDC subsets were detectable in the SI LP of steady-state mice and were expanded to a similar extent in the LP and intestinal lymph by treatment with Flt3L. Additionally, all four LP DC subsets expressed Flt3 mRNA at a markedly higher level than intestinal macrophages. Therefore, all the LP DCs and LDCs we describe here are responsive to Flt3L, whereas LP MΦs are not. Taken together, with the fact that the LPDC populations all express 100-fold higher levels of Flt3 mRNA than LP MΦs, these data further indicate that LDC and LP DC populations are distinct from LP MΦs. Interestingly, the Flt3L-induced expansion of the LP and lymph CD103+ CD11b+ compartment was much less pronounced than either the CD103− or CD8α+ DCs. Thus, the development of CD103+ CD11b+ intestinal DCs may require an additional growth factor, independent of Flt3 signaling, as previously suggested.3
Interestingly, CD103+ and CD103− LDCs had distinct effects on the differentiation of primed T lymphocytes. Although both CD103+ LDCs subsets induced naive T cell proliferation, they only induced IFN-γ production in proliferating T cells after activation by a Toll-like receptor ligand. These observations are consistent with previous reports, demonstrating that steady-state CD103+ DCs in the SI LP8, 9, 29 and rat intestinal lymph30 induce inflammatory cytokine production following Toll-like receptor activation. Conversely, CD103− DCs expressed higher levels of IL-12 and IL-23 mRNA and induced IFN-γ and IL-17 production from proliferating T cells even in the absence of Toll-like receptor stimulation. Coupled with their ability to confer gut-tropism to effector cells, priming by CD103− intestinal DCs is likely to represent an important mechanism for the initiation of gut-specific adaptive immune responses. In addition, IL-23 and IL-17 have a well-defined role in the induction of inflammatory responses in the gut.31, 32 Further functional analysis revealed that although both populations of CD103− DCs were able to induce IL-17 production from T cells in the steady state, only the CD103− CD11b+ CX3CR1int DCs were able to induce IFN-γ. Interestingly, whereas most data on steady-state intestinal DCs indicate that their function is tolerogenic, a role for intestinal CD11c+ MHCII+ CD11b+ LP DCs in the induction of IFN-γ and IL-17 has previously been proposed.33 The authors described a heterogeneous population that was largely CD103− CD11b+ and is likely to have contained at least some macrophages. Here, we have combined detailed phenotyping of intestinal populations with analysis of lymph cells, revealing bona fide IFN-γ- and IL-17-inducing DCs within this CD11c+ CD11b+ population.
Recently, a small population of colonic CD11c+ CX3CR1int cells has been identified, which share some phenotypic characteristics with our LDCs. These colonic cells increase in number after induction of experimental colitis.25 It is, therefore, possible that immunogenic DCs are maintained in low numbers in intestinal tissues in the steady state, and are rapidly recruited upon the disruption of intestinal homeostasis.
Here, we offer a definitive characterization of all migrating intestinal DCs and describe, for the first time, a specialized intestinal CD103− DC subset capable of inducing IFN-γ and IL-17 production from naive T cells. Importantly, these CD103− DCs confer gut-tropism to differentiating T cells, and may therefore represent an important mechanism for the induction of immune responses in the intestinal mucosa. Despite the presence of these immunostimulatory CD103− DCs in the steady state, the balance of the intestinal immune system favors the maintenance of tolerance. This may reflect the fact that CD103− DCs are present in much lower numbers than the tolerogenic CD103+ DCs. We suggest that the balance between CD103− DCs, CD103+ DCs, and intestinal macrophages is critical for maintaining intestinal immune homeostasis. Therefore, investigating how the functions of CD103− and CD103+ LDCs change in response to pathogenic or inflammatory stimuli will provide essential insights into the development of intestinal immunopathology and the initiation of immune responses against intestinal pathogens. Finally, targeting CD103− intestinal DCs may prove to be an important strategy for enhancing immune responses to orally administered vaccines.
Methods
Animals. C57/Bl6 mice were purchased from Harlan and maintained in individually ventilated cages. OT-1, OT-2, RORγt−/− (originally from Prof. Dan Littman), and CX3CR1GFP/+ mice (originally from Dr Steffen Jung) were bred and maintained under specific pathogen-free conditions at the Central Research Facility, Glasgow, United Kingdom. All procedures were approved by the local ethical committee and conducted under licenses issued by the UK Home Office.
Surgical procedures. Mesenteric lymphadenectomy and thoracic duct cannulation procedures were modified from the established protocols.17 Mesenteric lymphadenectomy was performed on 6-week-old male mice by laparotomy and blunt dissection. Six weeks later, mice were fed 0.2 ml olive oil to visualize the lymphatics, and the thoracic lymph duct was cannulated by the insertion of a polyurethane cannula (2Fr, Linton Instrumentation, Diss, UK). Lymph was collected in phosphate-buffered saline with 20 U ml−1 of heparin sodium (Wockhardt UK, Wrexham, UK), on ice, for up to 16 h. During surgical procedures the animals were maintained under inhalation anesthesia with Isoflurane (Abbot Animal Health, Abbott Park, IL).
Reagents. Cells were cultured in RPMI 1640, supplemented with 100 U ml−1 penicillin, 100 μg ml−1 streptomycin, 2 mm L-glutamine, 5% fetal calf serum (all from Invitrogen, Paisley, UK), and 50 μM 2-mercaptoethanol (Sigma-Aldrich, St Louis, MO). In some experiments, 2.5 μg ml−1 bacterial lipoprotein (Pam3CSK4; Invivogen, San Diego, CA) was used to activate the DCs in culture. Recombinant human Flt3L (Amgen, Seattle, WA) was injected intraperitoneally at 10 μg per mouse per day for 9 days.
Antibodies. Fluorochrome- or biotin- conjugated monoclonal antibodies to mouse antigens CD11b (M1/70), CD11c (HL3), CD40 (3/23), CD45 (RA3-6B2), CD80 (16-10A1), CD86 (GL1), CD172a (P84), Integrin β7 (FIB27), and Siglec F (E50/2440) were from BD Biosciences (Oxford, UK). The monoclonal Abs to mouse antigens CD4 (RM4-5), CD8α (53-6.7), CD19 (6D5), CD103 (2E7), CD44 (IM7), and CD62L (MEL-14) were from Biolegend (San Diego, CA). The I-A/I-E MHCII (M5/114.15.2) and F4/80 (BM8) Abs were purchased from eBioscience (San Diego, CA). The PDCA-1 and the agonistic anti-CD40 antibody (FGK45.5) were purchased from Miltenyi Biotec (Auburn, CA). Streptavidin Qdot-605 was purchased from Invitrogen. The Viaprobe dead cell exclusion dye (7AAD) and mouse isotype control antibodies, conjugated to appropriate fluorochromes, were purchased from BD Biosciences. CCR9 staining was detected with the 7E7 antibody (gift from Oliver Pabst, MHH Hanover), and a secondary goat anti-rat Ig antibody (BD Biosciences). Staining for aldehyde dehydrogenase was performed using the ALDEFLUOR kit (StemCell Technologies, Grenoble, France) according to the manufacturer's instructions.
Cell isolation. Thoracic duct leukocytes were collected on ice in phosphate-buffered saline with 20 U ml−1 Heparin, passed through a 40-μm cell strainer (BD Biosciences), and red blood cells lysed with ACK lysis buffer (Sigma-Aldrich). Cells were stained and analyzed by flow cytometry or sorted by fluorescence-activated cell sorter using the FACSAria cell sorter (BD Biosciences).
Small intestines were flushed with Hank's balanced salt solution 2% fetal calf serum and the Peyer's patches excised. The intestines were opened longitudinally and cut into 0.5-cm segments, which were incubated twice in Hank's balanced salt solution with 2 mm EDTA at 37°C with shaking for 20 min. Supernatants were discarded and the tissue digested with 1 mg ml−1 of collagenase VIII (Sigma-Aldrich) at 37°C with shaking for 15 min. Cells were passed through a 40-μm cell strainer and stained for flow cytometry.
Flow cytometry. Cell surface staining was performed in phosphate-buffered saline with 2% fetal calf serum and 10 mM EDTA for 30 min on ice. Where biotin-conjugated antibody was used, cells were further stained with a streptavidin-fluorochrome conjugate for 15 min. Samples were acquired on LSRII (BD Biosciences) or MACSQuant (Miltenyi Biotec) flow cytometers or sorted and analyzed by the FACSAria cell sorter (BD Biosciences). Acquired data was analyzed using FlowJo software (version 9.3.1; Tree Star, Ashland, OR).
Microscopy. Cells were centrifuged (300 rpm, 5 min) onto poly-L-Lysine coated slides (VWR International, Radnor, PA) and stained using the Rapid Romanowsky staining kit (Thermo Fisher Scientific, Waltham, MA). Images were obtained using a light microscope at × 40 magnification and were analyzed and archived using cell^B software (Olympus, Tokyo, Japan).
Proliferation assay. Sorted LDCs were pulsed with 2 mg ml−1 of ovalbumin (Worthington, Lakewood, NJ) for 2 h at 37°C and then extensively washed. They were cultured at varying ratios with 105 CFSE-labeled naive OT-1 or OT-2 cells at 37°C for 3 days. CFSE dilution was assessed by flow cytometry.
Cytokine detection. DCs and T cells were co-cultured for 3 days, then incubated for 4 h with phorbol 12-myristate 13-acetate and Ionomycin (both from Sigma-Aldrich), and the supernatants harvested. Concentrations of IFN-γ, IL-17, IL-10, and IL-4 were assessed by the Milliplex cytokine bead assay (Millipore, Billerica, MA) according to the manufacturer's instructions. Minimum detectable concentrations for all cytokines were <5 pg ml−1.
RNA extraction. RNA was extracted using the MicroRNA kit (Qiagen, Venlo, Netherlands) according to the manufacturer's instructions. Contaminating genomic DNA was removed using the DNA-free kit (Qiagen). RNA was reverse transcribed using Superscript First Strand kit (Invitrogen).
Real-time quantitative PCR (qPCR). cDNA was examined for the frequency of different transcripts using qPCR. IL-12 and IL-23 subunits were analyzed using the Taqman probe system. All qPCR Taqman reactions were performed in 20 μl volumes using colorless master mix (Promega, Fitchburg, WI) and primer/probe sets designed and validated by Applied Biosystems (Foster City, CA; Mm00518984_m1, Mm00434165_m1, Mm00434174_m1, and Mm00446968_m1). Fluorescence levels were detected and analyzed using the 7900HT Fast system (Applied Biosystems). All other qPCR reactions were performed using the Brilliant III Ultra Fast SYBR qPCR master mix (Agilent Technologies, Santa Clara, CA). Primers used were HPRT: forward GCTGACCTGCTGGATTACATTAA, reverse TGATCATTACAGTAGCTCTTCAGTCTGA; CCR7: forward ATTGCTGCTGAGGGAAGAG, reverse ACTTTTGGCTGTCGTTTTGG; colony-stimulating factor 1 receptor: forward GCATACAGCATTACAACTGGACCTACC, reverse CAGGACATCAGAGCCATTCACAG; and Flt3: forward GGTTTAAAGCGTACCCACGA, reverse GAACTGGGCGTCATCATTTT. Relative quantification was determined using the ΔΔCt method and normalized to expression of the housekeeping gene HPRT.
Statistical analysis. For comparison of means between two groups, the data were analyzed using a Student's t-test unless otherwise indicated. For comparisons involving more than two data sets, an analysis of variance was used. P-values <0.05 were considered significant and Bonferroni post-test was performed on the data sets. All statistical analysis was performed using GraphPad Prism and Microsoft Excel.
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Acknowledgements
We thank Dr Gordon MacPherson and Dr Andrew MacDonald for critical reading of the manuscript, Dr William Agace for providing the CX3CR1GFP/+ animals, and Prof. Peter Lane for providing the RORγt−/− mice. We also thank Laura Ford for technical assistance and the University of Glasgow Flow Cytometry Core Facility for assistance with cell sorting. VC was funded by a Medical Research Council award to SWFM; AA, CLS, and AMM were funded by the Wellcome Trust. SAH was supported by a Capacity Building Award in Integrative Mammalian Biology funded by the BBSRC, BPS, KTN, MRC and SFC, AstraZeneca, GlaxoSmithKline, and Pfizer.
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Cerovic, V., Houston, S., Scott, C. et al. Intestinal CD103− dendritic cells migrate in lymph and prime effector T cells. Mucosal Immunol 6, 104–113 (2013). https://doi.org/10.1038/mi.2012.53
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DOI: https://doi.org/10.1038/mi.2012.53
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