Abstract
Human artificial chromosome (HAC) has several advantages as a gene therapy vector, including stable episomal maintenance that avoids insertional mutations and the ability to carry large gene inserts. To examine the copy number effect on the gene expression levels and its stability for a long-term culture for a future application in gene therapy, we constructed a HAC vector carrying the human factor VIII (FVIII) complementary DNA, FVIII-HAC in Chinese hamster ovary (CHO) cells. One and more copies of FVIII gene on the HAC were expressed in the copy-number-dependent manner in the CHO cells. The HAC with 16 copies of FVIII, FVIII (16)-HAC, was transferred from CHO hybrids into a human immortalized mesenchymal stem cell using microcell-mediated chromosome transfer. The expression levels of HAC-derived FVIII transgene products were compared with transfected FVIII plasmids. The former showed expression levels consistent with those of the original clones, even after 50 population doublings, whereas the latter showed a remarkable decrease in expression despite unvarying DNA content, indicating that the gene on the HAC is resistant to gene silencing. These results suggest that the HAC-mediated therapeutic gene-expression system may be a powerful tool for stable expression of transgenes, and possibly for industrial production of gene products.
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Introduction
Hemophilia A, an X-linked hemorrhagic disorder caused by mutations in the gene that encodes FVIII, affects 1 in 5000 males. Clinically, severe hemophilia is characterized by spontaneous and prolonged hemorrhage that can result in disability. Currently, treatment consists of factor replacement by using pooled FVIII concentrate or recombinant product. Although these protein replacement approaches are effective in many patients with mild and moderate hemophilia, they are limited by several factors, including the short in vivo half-life, high cost and scarcity of purified FVIII. Thus, gene therapy for hemophilia A is an attractive alternative to the protein replacement therapy.1
Optimal gene delivery vectors support long-term stable maintenance in host cells without integration into the host chromosomes, and they support appropriate spatial and temporal expression of therapeutic genes at desired levels in specific target cells; in addition, they do not pose the risk of cellular transformation or stimulate the host immune system. The use of currently available viral vector systems may be complemented by the use of human artificial chromosomes (HAC) because HAC replicates and segregates independently from host chromosomes as a minichromosome.2, 3, 4, 5, 6 HAC can be transferred into different cell lines by microcell-mediated chromosome transfer. A HAC vector derived from human chromosome 21 and devoid of all endogenous genes is currently available. In addition, because HAC persists as a minichromosome, many complications associated with current vectors, including silencing of the therapeutic gene or oncogenesis resulting from integration in host chromosomes, may be minimized or eliminated. Thus, HAC has been offered as an alternative vector in cell-mediated gene therapy, and therapeutic genes have been transferred into multiple stem cell types via HAC, for example, genomic human p53 into multipotent germline stem cell7 and genomic Duchenne muscular dystrophy into mouse embryonic stem cell5 and human and mouse induced pluripotent stem cells.6 HACs support long-term correction of defective genes because expression from and transmission of these vectors are stable throughout many cell divisions in human cells.4, 5, 6, 7, 8 This long-term stability is a significant improvement over the stability associated with current gene delivery methods.
In this study, we constructed HACs with multiple copies of the FVIII gene, FVIII-HACs, and compared the mitotic stability and transgene expression levels by the HAC vectors with those by a conventional vector in human immortalized mesenchymal stem cell (hiMSC), in order to examine the dosage effects on the expression levels of FVIII after a long-term culture.
Materials and methods
Cell culture
Hypoxanthine phosphoribosyl transferase (HPRT)-deficient Chinese hamster ovary (CHO; JCRB0218) hybrids containing the 21HAC2 vector were constructed previously9 and maintained in Ham’s F-12 nutrient mixture (Invitrogen, Carlsbad, CA, USA) with 10% fetal bovine serum and 8 μg ml−1 blasticidin S (BS; Funakoshi, Tokyo, Japan). A hiMSC10 was maintained in Dulbecco’s modified Eagle’s medium (Sigma-Aldrich Inc., St Louis, MO, USA) supplemented with 10% fetal bovine serum (JRH Biosciences, Lenexa, KS, USA).5
Construction of the FVIII-HAC using CHO cells
A single copy of the FVIII expression cassette was 9.1 kb and composed of the following DNA elements: the HS4 insulator sequences derived from pCJ5-4 (gifted by Dr G Felsenfeld),11, 12 the cytomegalovirus immediate early enhancer-chicken β-actin hybrid promoter13 (gifted by Dr M Okabe), a human B-domain deleted factor VIII (FVIII)14 and a bovine growth hormone poly A signal. FVIII-expression cassettes (1 to 16 copies) were inserted into the modified pPAC4 vector (see Supplementary Figure 1). Each modified pPAC4 plasmid with the FVIII-expression cassettes, abbreviated as FVIII-PAC, had a 3′ HPRT-loxP site, allowing the FVIII cassettes to transfer readily into the 21HAC2 vector.9 The 21HAC2 was stably maintained in the CHO clone in selective medium. The CHO cells with a 21HAC2 were co-transfected with 10 μg of the modified pPAC4 vectors carrying the FVIII multicopy cassettes and 1 μg of the Cre-expression vector, pBS185 (Invitrogen) using Lipofectamine 2000 reagent (Invitrogen) according to the manufacturer's protocol. After 24 h of culture in basic growth medium, the cells were cultured in medium containing hypoxanthine–aminopterin–thymidine (Sigma-Aldrich) for selection.
Fluorescence in situ hybridization (FISH) analyses
FISH analyses were performed using spreads of fixed chromosome in either metaphase or interphase from each cell hybrid, a digoxigenin-labeled (Roche, Basel, Switzerland) human COT-1 DNA probe (Invitrogen) and a biotin-labeled FVIII complementary DNA (cDNA) probe. Chromosomal DNA was counterstained with 4′,6-diamidino-2-phenylindole (Sigma-Aldrich). Images were captured using the NIS-Elements system (Nikon, Tokyo, Japan).
Microcell-mediated chromosome transfer and transfection
Microcell-mediated chromosome transfer was performed as described previously.5 CHO cells containing the FVIII-HAC were used as donor microcell hybrids. Briefly, hiMSC cells were fused with microcells prepared from donor hybrid CHO cells that contained FVIII-HAC, and hiMSC cells containing a FVIII-HAC were selected with BS (4 μg ml−1). The transferred FVIII-HAC in each line was characterized by PCR, reverse transcription-PCR (RT-PCR) and FISH analyses. The hiMSC cells were transfected with a linearized PAC containing the FVIII 16 copies cassettes and the bsd gene using Lipofectamine 2000 reagent (Invitrogen) according to the manufacturer's protocol. After 24 h of culture in basic growth medium, the cells were selected with BS (4 μg ml−1).
Genomic PCR analyses
Genomic DNA was extracted from cell lines using a genomic DNA extraction kit with DNAse-free RNase (Gentra Systems, Minneapolis, MN, USA). Primer sequences are listed in Supplementary Table. Primers used for amplification of the FVIII transgene spanned the intron and did not amplify a product in the host genomic DNA.
Reverse transcription-PCR
Total RNA was extracted using the Isogen reagent (Nippon Gene, Tokyo, Japan). Prepared RNA was treated with RNase-free DNase I (WAKO Jun-yaku, Osaka, Japan) and further purified using RNeasy columns (Qiagen, Hilden, Germany) according to the manufacturer’s instructions. First-strand cDNA synthesis was carried out using an oligo-(dT)20 primer and the Super Script III reverse transcriptase (Invitrogen) according to the manufacturer’s instructions. Primer sequences are listed in Supplementary Table. These primers spanned the introns and did not amplify a product from genomic DNA (data not shown).
Enzyme-linked immunosorbent assay
Human FVIII antibodies (monoclonal anti-FVIII light chain and monoclonal anti-FVIII heavy chain) and plasma-derived human FVIII (phFVIII) were kindly gifted from the Chemo-Sero-Therapeutic Research Institute (Kaketsuken, Kumamoto, Japan). In all, 96-well microtiter plates (Costar, Cambridge, MA, USA) were coated with 10 μg ml−1 monoclonal antibodies to FVIII light chain. After blocking with 1% bovine serum albumin and 0.01% NaN3 in Tris-buffer saline containing 0.05% Tween20, samples or phFVIII (150 U mg−1) as a standard in Tris-buffer saline containing 0.05% Tween20 and 0.2% bovine serum albumin was added. A standard curve was constructed by serial dilution of phFVIII from 250 to 3.91 μg ml−1. After 2 h incubation at room temperature, biotinylated monoclonal antibodies to FVIII were then added and incubated for 2 h at room temperature. Biotinylated secondary antibodies to FVIII heavy chain were detected by streptavidin-biotinylated horseradish peroxidase complex. The absorbance was measured at 460 nm to quantify the antigen in the original samples.
Clotting assay
FVIII activity levels in the conditioned medium of cells or phFVIII (Kaketsuken) as a standard were measured as thrombin generation by activation of the coagulation cascade. Assay components, including human FVIII-deficient plasma (Cosmo Bio, Tokyo, Japan), phospholipid and silicic acid (Sanko Junyaku, Tokyo, Japan), CaCl2 and Tris-HCl were mixed and incubated for 10 min at 37 °C. The substrate Boc-Val-Pro-Arg-MCA (Peptide Institute, Osaka, Japan) was added, and the fluorescence was measured with a spectrofluorometer (PerSeptive Biosystems CytoFluor4000, Applied Biosystem, Foster City, CA, USA) at 360 nm/460 nm. A standard curve was obtained by plotting known activities of phFVIII (Kaketsuken).
Results
Reconstruction of HAC with multicopies of FVIII expression cassettes
The 21HAC2 vector contains a 5′ HPRT-loxP cloning site into which circular DNA can be reproducibility inserted using the Cre-loxP system. We integrated each FVIII cassette into a 21HAC2 vector (FVIII-HAC). Each FVIII-PAC construct with one or more copies of the FVIII sequences (Supplementary Figure 1) was co-transfected with a Cre expression plasmid into CHO cells bearing a 21HAC2. The expressed Cre-recombinase reconstituted a functional HPRT gene, which confers hypoxanthine–aminopterin–thymidine resistance, on the recombinant FVIII (rFVIII)-HACs (Figure 1). In all, 144 hypoxanthine–aminopterin–thymidine-resistant colonies were expanded and screened by PCR analysis with the primers for the FVIII transgene and the reconstructed HPRT gene. Of the 144 hypoxanthine–aminopterin–thymidine-resistant clones, 98 carried an intact FVIII-HAC. Of the 98 clones, 85 expressed FVIII, as confirmed by RT-PCR and enzyme-linked immunosorbent assay analysis. We recovered averaging 17 CHO clones for each of a single copy and the 4 different multicopy (1, 2, 4, 8 and 16 copies of FVIII) on the HAC, abbreviated as FVIII (1)-HAC, FVIII (2)-HAC, FVIII (4)-HAC, FVIII (8)-HAC and FVIII (16)-HAC, respectively. For each of the five types of FVIII-HACs, seven clones with the highest levels of FVIII expression were selected for FISH analysis. FISH analysis confirmed that a FVIII cDNA probe hybridized to a HAC and that each FVIII-HAC was present as an independent minichromosome in 26 of the 35 CHO clones. The FVIII transgenes were integrated into the HAC and a host chromosome in other nine clones. Finally, 10 clones (2 for each type of FVIII-HAC) were randomly selected from the 26 clones. Only clones with a single correct insertion, as representative clones in Figure 2a, were used for further analyses. These results indicate that several FVIII-HACs with differing and defined numbers of FVIII genes were successfully constructed by cloning a defined FVIII cassette into the 21HAC2 vector.
Expression levels of FVIII transgene
The 10 clones selected for further analysis were subjected to PCR using the two primer sets; one set spanned the FVIII transgene, and the other spanned the site reconstructed within HPRT (Figure 2b). Genomic PCR analysis of FVIII sequences demonstrated that the copy number of the FVIII transgene in the HAC correlated with those in the PAC, which was transfected in CHO cells. Considering the FISH results in the 10 clones carrying a single and independent FVIII-HAC, the PCR analysis further confirmed that each FVIII-PAC construct had been correctly incorporated into a 21HAC2 to form different FVIII-HACs each with a specified number of FVIII genes.
Next, we examined whether FVIII expression levels correlated with FVIII copy number on the HAC in CHO clones. Expression of FVIII proteins was analyzed by enzyme-linked immunosorbent assay (Figure 2c). Each of the 10 CHO clones carrying a FVIII-HAC were individually cultured until a confluent monolayer formed, and the amount of secreted FVIII present in the conditioned media was determined. The levels of secreted FVIII in the conditioned media correlated with the FVIII copy number in a dose-dependent manner in each CHO clone.
Stable FVIII expression from FVIII-HACs in human cells
The 21HAC2 vector is very stable in human cells, and mesenchymal stem cells hold promise for use in adult stem cell-mediated gene therapy.5 To investigate the transgene regulation and the mitotic stability of FVIII-HACs in a human cell line, two FVIII-HACs, FVIII (4)-HAC and FVIII (16)-HAC, were transferred separately from CHO cells into hiMSCs (Figure 3a). The hiMSC hybrids were selected with blasticidin S and were screened by PCR, RT-PCR and FISH analyses. The FVIII-HACs were stably maintained in hiMSC clones, and they expressed FVIII mRNA, as determined by RT-PCR (Figure 3b), and FVIII expression levels were higher in hiMSC clones with 16 FVIII copies than those in the clones with four FVIII copies.
Clotting assays using the conditioned media from the hiMSC cultures were also performed (Figure 3c), and the conditioned media from clones with 16 copies of FVIII performed better in the clotting assays than did those from the clones with 4 copies of FVIII. To confirm the function of human FVIII from the HAC (but not to examine the varidation of CHO cells for using cell therapy), CHO cells with the FVIII-HAC were intraperitoneally injected to the hemophilia model mice,15 and a tail clipping was performed whether model mice were rescued bleeding to death or not (Supplementary Figure 2 and Supplementary Data). These in vivo experiments showed that the FVIII-HAC contributed to expression of functional FVIII.
To evaluate the stability of the FVIII transgene on and FVIII gene expression from these FVIII (16)-HAC, the hiMSC cells were transfected with a PAC with 16 copies of the FVIII transgene and a BS-resistant gene (Figure 4a). Then, we selected stable transfectants. Single BS-resistant clones were expanded and subjected to PCR and RT-PCR analyses to assess the structure of the FVIII transgenes and the FVIII mRNA expression level, respectively, in each BS-resistant clone. Of 53 BS-resistant clones, four clones with a higher FVIII copy number were identified by PCR. The FVIII transgene mRNA expression levels were also higher in these four clones than in the others. Each independent hiMSCs line with a FVIII-HAC or a FVIII-PAC was cultured in medium with BS and separately in medium lacking BS. FISH analysis was performed after 50 population doublings (PDLs) of selected and unselected cultures to assess the mitotic stability of the FVIII-HACs. Individual intact FVIII-HACs were independently observed in metaphase cells after 50 PDLs in each culture, whereas metaphase figures from cultures derived from the FVIII-PAC transfectants showed that the FVIII-PAC had integrated into host chromosomes (Figure 4b). PCR analyses revealed that both FVIII-HAC sequences and FVIII-PAC sequences were retained under the unselected condition for the hiMSC cultures (Figures 4c and d). The FVIII mRNA expression levels were stable in clones with FVIII-HAC from 2 to 50 PDLs. Meanwhile, FVIII mRNA expression levels declined over the course of 50 PDLs in the hiMSC cultures derived from FVIII-PAC transfectants with or without selection. These results indicate that the FVIII-HACs were mitotically stable and they did not integrate into the host chromosomes; moreover, FVIII transgene expression from FVIII-HACs persisted in the human cells even after long-term culture in vitro.
Discussion
We developed HACs with multiple copies of a human FVIII transgene that may be useful for the gene expression. We assessed several characteristic of these HACs, which each carried one or more copies of the FVIII transgene, as a step toward producing recipient cells with controllable expression for use in cell-based transgene therapies. Our results showed that FVIII expression levels in CHO cells depended on the FVIII copy number on the HAC; specifically, CHO cells with a FVIII (16)-HAC expressed more protein than four types of CHO cells with FVIII (1, 2, 4 or 8)-HACs. Similarly, we showed that hiMSC hybrids bearing FVIII (16)-HAC supported higher transgene expression than those bearing FVIII (4)-HAC. The HAC with more copies of the FVIII transgene apparently support higher levels of FVIII expression.
A non-viral transgene delivery method consisting of transplantation of FVIII-transduced autologous fibroblasts was tested in a clinical trial.16 The data acquired from this phase I clinical trial showed only a modest and temporary indication of positive effects, suggesting that there is a relationship between durable transgene expression and transgene silencing. Moreover, the site of integration of a transgene into a host chromosome has a major effect on the transgene transcription rate, a phenomenon called a position effect.17 Numerous studies using viral vectors or cDNA plasmids to generate transgene-expressing clones have observed repression of transgene expression.18, 19, 20, 21, 22 In this study, ⩾92% FVIII-PACs randomly integrated into the hiMSC host genome, whereas independently segregating FVIII-HACs persisted in ⩾90% of the cells as determined by FISH analysis. Therefore, our results suggested that reductions in transgene expression in the FVIII-PAC transfected hiMSC cells were caused by silencing rather than by loss of the transgene itself. Furthermore, our results demonstrated that hiMSC could stably maintain HACs carrying multiple copies of a FVIII transgene and that this transgene was resistant to silencing when present on a HAC. HAC vectors may support persistent transgene expression, thereby minimizing the need for cell reimplantation because of a stable expression system that depends on a less invasive delivery method and is not influenced by position effects associated with integration sites.
rFVIII is one of the most complex mammalian proteins, and a biotechnology venture may be important to the development of a treatment for hemophilia A. HAC vectors may support persistent transgene expression from our results, thereby these donor CHO clones may also be useful for biopharmaceutical production of rFVIII. The stability of cell lines in the absence of selection pressure is important to ensure predictable and high yields of recombinant protein during production.23 We examined FVIII production in cultures of CHO cells carrying FVIII-HACs in the absence of selection and over the long term. Some CHO clones gradually lost the FVIII-HAC; nevertheless, hiMSC hybrid clones retained the same FVIII-HAC over the long term. The current study did not address the mechanism by which host cell types, rodent or human, influence the retention rate for HAC maintenance. However, empirically, the 21HAC2 vector is very stable in human cells,5 in clear contrast to its instability in rodent cells. To establish an rFVIII production system in the future, the human hepatocellular carcinoma cell line (HepG2) or human immortalized hepatocytes could be used as the host cell because it is of hepatic origin, which may contribute to proper rFVIII processing and secretion.24, 25
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Acknowledgements
We wish to thank Drs M Okabe (Osaka University) for providing pCX-EGFP; G Felsenfeld, (National Institutes of Health) for providing pJC5-4. This study was supported in part by a Health and Labor Science Research Grant for Research on HIV/AIDS and Research on Intractable Diseases from the Japanese Ministry of Health, Labour and Welfare, a Grant-in-Aid for Research Activity Start-up, and a Regional Innovation Cluster Program grant (accelerative support) from the Ministry of Education, Culture, Sports, Science and Technology of Japan. All animal studies were approved by the Institutional Animal Care and Use Committee of Tottori University.
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Kurosaki, H., Hiratsuka, M., Imaoka, N. et al. Integration-free and stable expression of FVIII using a human artificial chromosome. J Hum Genet 56, 727–733 (2011). https://doi.org/10.1038/jhg.2011.88
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DOI: https://doi.org/10.1038/jhg.2011.88
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