The first Japanese case of central precocious puberty with a novel MKRN3 mutation

Abstract

MKRN3, located on chromosome 15q11.2, encodes makorin ring-finger 3, which is an upstream suppressor of the hypothalamic-pituitary-gonadal axis. Mutation of this gene induces central precocious puberty (CPP). As MKRN3 is maternally imprinted, only the paternal allele is expressed. This is the first report of an 8-year-old Japanese girl with CPP caused by a novel frameshift mutation in MKRN3 (p.Glu229Argfs*3).

Puberty is the period during which a child develops and changes physiologically and psychologically into an adult. The timing of puberty is defined by complex interactions between environmental, nutritional, racial and genetic factors. Brain tumors, brain trauma and gene mutations, such as KISS1 and KISS1R mutations, are known to cause central precocious puberty (CPP). However, in the large majority of cases, the underlying causes of CPP are unclear.

MKRN3 encodes makorin ring-finger 3, which is thought to be an upstream suppressor of the hypothalamic-pituitary-gonadal axis. MKRN3 mutations are known to result in CPP. As MKRN3 is a maternally imprinted gene, only paternally inherited MKRN3 mutations result in CPP.1 Indeed, maternally inherited MKRN3 mutations do not result in CPP but rather confer a carrier status on the individual. To date, MKRN3 mutations are the most commonly reported genetic cause of familial CPP.113 However, CPP caused by an MKRN3 mutation has not yet been reported in Japan.

Currently, the most common medication for CPP is leuprorelin, which is a gonadotropin-releasing hormone (GnRH) analog, and the use of leuprorelin for suppressing puberty patients with CPP caused by MKRN3 mutations has been reported. Here, we present the first report of a Japanese girl with CPP caused by a novel MKRN3 mutation to whom leuprorelin was administered for 2 years as an effective therapy.

An 8-year-old Japanese girl, whose parents were of non-consanguineous marriage, was referred to our hospital owing to premature menarche. She was born at 39 weeks. Her thelarche began at 5 years of age. On initial examination, her pubertal stage was Tanner 3 for breast development and Tanner 2 for pubic hair growth. She exhibited growth acceleration (height; 132.3 cm (+1.1 s.d.), body weight; 40.1 kg; Figure 1) with advanced bone age (11 years old). A GnRH stimulation test showed a pubertal stage, resulting in an LH level of 2.9–52.5 U/l and an FSH level of 5.6–27.9 U/l. Her estradiol level was <25 pg/ml. Enhanced MRI showed normal findings for the pituitary. She was treated with an appropriate GnRH analog after the diagnosis of idiopathic CPP, and her pubertal development has been well controlled for 2 years.

Figure 1
figure1

A growth curve of the patient. She has been treated with a GnRH analog for 2 years, and her CPP is well controlled. CPP, central precocious puberty; GnRH, gonadotropin-releasing hormone.

The height of the patient’s mother was 158 cm, and her age of puberty onset was 13 years. The height of the patient’s father was 173 cm, and his age of onset of puberty was unknown. The patient’s paternal grandparents were of non-consanguineous marriage. The paternal grandfather’s height was 168 cm, and the age of puberty onset was unknown. The paternal grandmother’s height was 140 cm, and she began menarche at 10 years of age. The paternal grandmother showed precocious puberty.

This patient’s mutation was identified via mutation screening of 15 unrelated Japanese patients with CPP (10 females and five males). This study was approved by the Institutional Review Board Committee at the National Center for Child Health and Development, and was performed after obtaining written informed consent. Genomic DNA was extracted from peripheral leukocytes using standard procedures. Samples from the 15 patients with CPP were subjected to whole-exome sequencing using Nextera Rapid Capture Exome Kit (HiSeq SBS Kit v4-HS Illumina, San Diego, CA, USA) and a HiSeq2500 sequencer (Illumina). Sequence data were analyzed as described previously.14 In this study, we focused on 32 genes that are known to be involved in regulating the hypothalamic-pituitary-gonadal axis.14 Possible pathogenic mutations were confirmed by Sanger sequencing, and primer sequences are available upon request. To confirm the heterozygous mutation identified in the patient, we subcloned the PCR products, and sequenced the mutant and wild-type alleles separately. We also analyzed genomic DNA samples obtained from the patient’s family members by Sanger sequencing (Figures 2a and c).

Figure 2
figure2

(a) The pedigree of this family. Squares indicate males; circles indicate females. Black symbols indicate patients with CPP. Symbols with a black point inside indicate asymptomatic carriers. White indicates patients without MKRN3 mutations. The arrow indicates the proband. (b) The position of the MKRN3 mutation in relation to genomic structure. The box indicates the exon. Black indicates the coding region; white indicates the untranslated regions. (c) Sanger sequencing chromatograms of the genomic region surrounding the MKRN3 mutation. The results are shown for the patient (left) and her family members (rightl). CPP, central precocious puberty.

A heterozygous 1-bp insertion in the single exon of MKRN3 (c.683_684insA, p.Glu229fsArg*3) was found in the patient (Figure 2b). This insertion has not been reported previously, and it was not found in exome databases (The ExAC browser (http://exac.broadinstitute.org/); and the Human Genetic Variation Browser (http://www.genome.med.kyoto-u.ac.jp/SnpDB)). The patient had no pathogenic mutations in the other genes that were examined. The father and paternal grandmother of the patient were found to be heterozygous for the MKRN3 mutation (Figure 2c), and MKRN3 mutations were absent from the other 14 patients.

In this study, we identified the first Japanese MKRN3 mutation causing CPP in an 8-year-old girl, who was subsequently effectively treated with leuprorelin to control her pubertal development.

In recent years, the clinical features of patients with MKRN3 defects have gradually been determined.113

A report from Brazil showed that male patients with CPP caused by MKRN3 mutations have a later pubertal onset than do those without MKRN3 mutations (median age 8.2 vs.7.0 years old, respectively, P=0.033), and they showed typical clinical and hormonal features of CPP.13 By contrast, previous reports from France and Brazil revealed a median age of puberty onset of 6 years in females with CPP caused by MKRN3 mutations.3,11 In particular, the report from Brazil did not find any significant associations of clinical or biological features of CPP with MKRN3 mutations.3 In our female patient, thelarche began at 5 years of age, and menarche at 8 years of age, resulting in an earlier onset of puberty than in previous reports. Nonetheless, greater numbers of Japanese patients with MKRN3 mutations are required to reveal the clinical features of CPP in the Japanese population.

The frequency of CPP with MKRN3 mutation in Korean females is relatively low: 7 in 260 (2.7%);7 our investigation of female Japanese patients with CPP caused by MKRN3 mutations revealed a relatively higher frequency of 1 in 10 (10.0%). The most recent retrospective study reporting the frequency of MKRN3 mutations in patients with female idiopathic CPP in Brazil was 6.4%.13 Taken together, the frequency of female patients with CPP caused by MKRN3 mutations in Japan is high compared with Korean and Brazilian female patients with CPP. However, the study carried out in Brazil is biased in that the patients with CPP were recruited from familial CPP groups. As the studies in Korea and Japan did not have this selection bias, the frequency of CPP caused by MKRN3 mutations in these populations may be accurate. Our Japanese study had quite a small sample; thus, the frequency of CPP in Japanese females may decrease if more patients are recruited. Additional study is required to reveal the frequency of CPP caused by MKRN3 mutations in Japan and worldwide.

Currently, a GnRH analog, which acts on the anterior pituitary by competing for the GnRH receptor and reducing the number of active GnRH receptors, is the gold standard treatment for CPP.15,16 As CPP is associated with a high risk of estrogen-dependent diseases, such as breast cancer and cardiovascular disease, GnRH analog treatment should be continued beyond the adequate age for patients with CPP caused by MKRN3 mutations.17 Previous reports show that most patients with CPP caused by MKRN3 mutation who are treated with an appropriate GnRH analog seem to have satisfactorily controlled pubertal development. For example, Macedo et al.11 reported that GnRH treatment had a therapeutic effect in six out of eight patients with CPP caused by MKRN3 mutations. Menarche had already started when our patient was referred to our hospital at initial examination, and she was treated with the GnRH analog immediately after the diagnosis of CPP. She has been treated with leuprorelin 50 μg/kg every 4 weeks for 2 years, and her pubertal signs have not progressed, indicating that leuprorelin treatment is effective for this female Japanese patient with CPP caused by an MKRN3 mutation.

We present here the first report of CPP in an 8-year-old Japanese girl with a novel MKRN3 mutation and her effective treatment with leuprorelin. In this small Japanese population study, the prevalence of CPP caused by MKRN3 mutations was moderate.

References

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    Yatsuga, Shuichi HGV Database http://dx.doi.org/10.6084/m9.figshare.hgv.1351 (2017)

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Acknowledgements

This study was supported by a Grant-in-Aid from the Japan Society for the Promotion of Science, and by Grants from the Ministry of Health, Labour and Welfare; from the Japan Agency for Medical Research and Development; from the National Center for Child Health and Development; and from the Takeda Foundation.

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Correspondence to Shuichi Yatsuga.

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Nishioka, J., Shima, H., Fukami, M. et al. The first Japanese case of central precocious puberty with a novel MKRN3 mutation. Hum Genome Var 4, 17017 (2017). https://doi.org/10.1038/hgv.2017.17

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