Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Letter
  • Published:

Evolution of RNA editing in kinetoplastid protozoa

Abstract

THE editing of RNA in trypanosomatid mitochondria involves the insertion and occasional deletion of uridine residues within coding regions of maxicircle messenger RNA transcripts. The extent to which the transcripts of homologous genes undergo editing differs in different species. In some, entire genes are edited (pan-editing), whereas in others, editing is limited to the 5' termini of editing domains (5' editing)1,2. Here we investigate which type of editing is ancestral and which is derived, by analysing RNA editing in the different lineages, using a kinetoplastid phylogeny reconstructed from nuclear small subunit ribosomal RNA sequences. We conclude that the ancestral cryptogenes were pan-edited, and we hypothesize that the 5'-edited homologues were generated by several independent events from partially edited RNAs, in which case editing may be a more primitive mechanism than previously thought.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Similar content being viewed by others

References

  1. Simpson, L., Maslov, D. A. & Blum, B. in RNA Editing—The Alteration of Protein Coding Sequences of RNA (ed. Benne, R.) 53–85 (Horwood, New York, 1993).

    Google Scholar 

  2. Stuart, K. in RNA Editing—The Alteration of Protein Coding Sequences of RNA (ed. Benne, R.) 25–52 (Horwood, New York, 1993).

    Google Scholar 

  3. Vickerman, K. in Biology of the Kinetoplastida (eds Lumsden, W. H. R & Evans, D. A.) 1–34 (Academic, London, New York and San Francisco, 1976).

    Google Scholar 

  4. Lom, J. in Biology of the Kinetoplastida (eds Lumsden, W. H. R. & Evans, D. A.) 267–337 (Academic, London, New York and San Francisco, 1976).

    Google Scholar 

  5. Kivic, P. A. & Walne, P. L. Origins of Life 13, 269–288 (1984).

    Article  ADS  Google Scholar 

  6. Bhat, G. J., Koslowsky, D. J., Feagin, J. E., Smiley B. L. & Stuart, K. Cell 61, 885–894 (1990).

    Article  CAS  Google Scholar 

  7. Sturm, N. R., Maslov, D. A., Blum, B. & Simpson, L. Cell 70, 469–476 (1992).

    Article  CAS  Google Scholar 

  8. Decker, C. J. & Sollner-Webb, B. Cell 61, 1001–1011 (1990).

    Article  CAS  Google Scholar 

  9. Maslov, D. A. & Simpson, L. Cell 70, 459–467 (1992).

    Article  CAS  Google Scholar 

  10. Van der Spek, H., et al. EMBO J. 10, 1217–1224 (1991).

    Article  CAS  Google Scholar 

  11. Blum, B., Bakalara, N. & Simpson, L. Cell 60, 189–198 (1990).

    Article  CAS  Google Scholar 

  12. Feagin, J. E., Abraham, J. M. & Stuart, K. Cell 53, 413–422 (1988).

    Article  CAS  Google Scholar 

  13. Koslowsky, D. J., Bhat, G. J., Perrollaz, A. L., Featin, J. E. & Stuart, K. Cell 62, 901–911 (1990).

    Article  CAS  Google Scholar 

  14. Landweber, L. F. & Gilbert, W. Nature 363, 179–182 (1993).

    Article  ADS  CAS  Google Scholar 

  15. Landweber, L. F. BioSystems 28, 41–45 (1992).

    Article  CAS  Google Scholar 

  16. Fink, G. R. Cell 49, 5–6 (1987).

    Article  CAS  Google Scholar 

  17. Derr, L. D. & Strathern, J. Nature 361, 170–173 (1993).

    Article  ADS  CAS  Google Scholar 

  18. Sturm, N. R. & Simpson, L. Nucleic Acids Res. 19, 6277–6281 (1991).

    Article  CAS  Google Scholar 

  19. Corell, R. A. et al. Nucleic Acids Res. 21, 4313–4320 (1993).

    Article  CAS  Google Scholar 

  20. Lee, S. T., Tarn, C. & Chang, K. P. Molec. Biochem. Parasit. 58, 187–203 (1993).

    Article  CAS  Google Scholar 

  21. Barrois, M., Riou, G. & Galibert, F. Proc. natn. Acad. Sci. U.S.A. 78, 3323–3327 (1982).

    Article  ADS  Google Scholar 

  22. Frasch, A. et al. Biochim. biophys. Acta 607, 397–410 (1980).

    Article  CAS  Google Scholar 

  23. Koslowsky, D. J., Riley G. R., Feagin, J. E. & Stuart, K. Molec. cell. Biol. 12, 2043–2049 (1992).

    Article  CAS  Google Scholar 

  24. Covello, P. S. & Gray, M. W. Trends Genet. 9, 265–268 (1993).

    Article  CAS  Google Scholar 

  25. Sogin, M., Elwood, H. & Gunderson, J., Proc. natn. Acad. Sci. U.S.A, 83, 1383–1387 (1986).

    Article  ADS  CAS  Google Scholar 

  26. Hernandez, R., Rios, P., Valdes, a. & Pinero, D. Molec. Biochem. Parasit. 41, 207–212 (1990).

    Article  CAS  Google Scholar 

  27. Briones, M. R. S. et al. Molec. Biochem. Parasit. 53, 121–128 (1992).

    Article  CAS  Google Scholar 

  28. Schnare, M., Collings, J. & Gray, M. Curr. Genet. 10, 405–410 (1986).

    Article  CAS  Google Scholar 

  29. Olsen, G. J. et al. Nucleic Acids Res. 20 suppl., 2199–2200 (1992).

    Article  CAS  Google Scholar 

  30. Olsen, G. J. Sequence Editor and Analysis Program (University of Illinois, Urbana, 1990).

    Google Scholar 

  31. Peckova, H. & Lom, J. Parasit. Res. 76, 553–558 (1990).

    Article  CAS  Google Scholar 

  32. Swofford, D. L. PAUP: Phylogenetic Analysis Using Parsimony, Version 3.1 (Illinois Natural History Survey, Champaign 1993).

    Google Scholar 

  33. Felsenstein, J. PHYLIP (Phylogeny Inference Pacakage) Version 3.4 (University of Wash-ington, Seattle 1991).

    Google Scholar 

  34. Lake, J. A. Proc. natn. Acad. Sci. U.S.A. 91, 1455–1459 (1994).

    Article  ADS  CAS  Google Scholar 

  35. Lake, J., de la Cruz, V., Ferreira, P., Morel, C. & Simpson, L. Proc. natn. Acad. Sci. U.S.A. 85, 4779–4783 (1988).

    Article  ADS  CAS  Google Scholar 

  36. Hoare, C. A. The Trypanosomes of Mammals (Blackwell Scientific, Oxford, 1972).

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Maslov, D., Avila, H., Lake, J. et al. Evolution of RNA editing in kinetoplastid protozoa. Nature 368, 345–348 (1994). https://doi.org/10.1038/368345a0

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1038/368345a0

This article is cited by

Comments

By submitting a comment you agree to abide by our Terms and Community Guidelines. If you find something abusive or that does not comply with our terms or guidelines please flag it as inappropriate.

Search

Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing