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Article
| Open AccessAmino acid auxotrophies in human gut bacteria are linked to higher microbiome diversity and long-term stability
- Svenja Starke
- , Danielle M. M. Harris
- & Silvio Waschina
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Article
| Open AccessGenomic and transcriptomic insights into complex virus–prokaryote interactions in marine biofilms
- Kun Zhou
- , Tin Yan Wong
- & Pei-Yuan Qian
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Oxytetracycline and heavy metals promote the migration of resistance genes in the intestinal microbiome by plasmid transfer
- Xiaojun Lin
- , Chaonan Zhang
- & Yanbin Xu
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Article
| Open AccessHost and microbiome jointly contribute to environmental adaptation
- Carola Petersen
- , Inga K. Hamerich
- & Hinrich Schulenburg
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Article
| Open AccessStarvation responses impact interaction dynamics of human gut bacteria Bacteroides thetaiotaomicron and Roseburia intestinalis
- Bin Liu
- , Daniel Rios Garza
- & Karoline Faust
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Comment
| Open AccessNovel T4ASS effector with quorum quenching activity
- Vittorio Venturi
- & Cristina Bez
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Physiological and evolutionary contexts of a new symbiotic species from the nitrogen-recycling gut community of turtle ants
- Benoît Béchade
- , Christian S. Cabuslay
- & Jacob A. Russell
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Review Article
| Open AccessPesticide exposure and the microbiota-gut-brain axis
- Rie Matsuzaki
- , Eoin Gunnigle
- & John F. Cryan
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Article
| Open AccessGrowth rate is a dominant factor predicting the rhizosphere effect
- José L. López
- , Arista Fourie
- & Bas E. Dutilh
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Article
| Open AccessDelivery mechanism can enhance probiotic activity against honey bee pathogens
- Brendan A. Daisley
- , Andrew P. Pitek
- & Elina Niño
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Article
| Open AccessSulfur cycling connects microbiomes and biogeochemistry in deep-sea hydrothermal plumes
- Zhichao Zhou
- , Patricia Q. Tran
- & Karthik Anantharaman
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Article
| Open AccessMetabolic influence of core ciliates within the rumen microbiome
- Thea O. Andersen
- , Ianina Altshuler
- & Phillip B. Pope
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Mining chicken ileal microbiota for immunomodulatory microorganisms
- Yan Liu
- , Yuqing Feng
- & Dan Liu
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Article
| Open AccessCo-diversification of an intestinal Mycoplasma and its salmonid host
- Jacob A. Rasmussen
- , Pia Kiilerich
- & Morten T. Limborg
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Brief Communication
| Open AccessPulsed, continuous or somewhere in between? Resource dynamics matter in the optimisation of microbial communities
- Andrew D. Letten
- & William B. Ludington
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Article
| Open AccessDissecting microbial communities and resistomes for interconnected humans, soil, and livestock
- Alexandre Maciel-Guerra
- , Michelle Baker
- & Tania Dottorini
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Suppression of the insect cuticular microbiomes by a fungal defensin to facilitate parasite infection
- Song Hong
- , Yanlei Sun
- & Chengshu Wang
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Article
| Open AccessGenomic diversity and biosynthetic capabilities of sponge-associated chlamydiae
- Jennah E. Dharamshi
- , Natalia Gaarslev
- & Thijs J. G. Ettema
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Article
| Open AccessMetaproteome plasticity sheds light on the ecology of the rumen microbiome and its connection to host traits
- Goor Sasson
- , Sarah Moraïs
- & Itzhak Mizrahi
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Article
| Open AccessAtmospheric chemosynthesis is phylogenetically and geographically widespread and contributes significantly to carbon fixation throughout cold deserts
- Angelique E. Ray
- , Julian Zaugg
- & Belinda C. Ferrari
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Microbiome of the freshwater sponge Ephydatia muelleri shares compositional and functional similarities with those of marine sponges
- Scott Sugden
- , Johannes Holert
- & Lisa Y. Stein
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Article |
Amino acid utilization allows intestinal dominance of Lactobacillus amylovorus
- Yujia Jing
- , Chunlong Mu
- & Weiyun Zhu
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Article |
Ecological memory of prior nutrient exposure in the human gut microbiome
- Jeffrey Letourneau
- , Zachary C. Holmes
- & Lawrence A. David
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Article
| Open AccessRapid bacterioplankton transcription cascades regulate organic matter utilization during phytoplankton bloom progression in a coastal upwelling system
- Benjamin Pontiller
- , Sandra Martínez-García
- & Jarone Pinhassi
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Article
| Open AccessCross-feeding niches among commensal leaf bacteria are shaped by the interaction of strain-level diversity and resource availability
- Mariana Murillo-Roos
- , Hafiz Syed M. Abdullah
- & Matthew T. Agler
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Article
| Open AccessPriority effects shape the structure of infant-type Bifidobacterium communities on human milk oligosaccharides
- Miriam N. Ojima
- , Lin Jiang
- & Takane Katayama
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Mobile genetic elements used by competing coral microbial populations increase genomic plasticity
- Pengxia Wang
- , Yi Zhao
- & Xiaoxue Wang
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Article
| Open AccessDynamic metabolic interactions and trophic roles of human gut microbes identified using a minimal microbiome exhibiting ecological properties
- Sudarshan A. Shetty
- , Ioannis Kostopoulos
- & Clara Belzer
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Article
| Open AccessComplex and unexpected outcomes of antibiotic therapy against a polymicrobial infection
- Lydia-Ann J. Ghuneim
- , Ruma Raghuvanshi
- & Robert A. Quinn
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Ecological dynamics of the gut microbiome in response to dietary fiber
- Hongbin Liu
- , Chen Liao
- & Lei Dai
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Article
| Open AccessIdentification of beneficial and detrimental bacteria impacting sorghum responses to drought using multi-scale and multi-system microbiome comparisons
- Mingsheng Qi
- , Jeffrey C. Berry
- & Rebecca S. Bart
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Trophic interactions between predatory protists and pathogen-suppressive bacteria impact plant health
- Sai Guo
- , Chengyuan Tao
- & Stefan Geisen
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Article
| Open AccessSynthetic bacterial community derived from a desert rhizosphere confers salt stress resilience to tomato in the presence of a soil microbiome
- Lucas Schmitz
- , Zhichun Yan
- & Xu Cheng
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Article
| Open AccessPseudomonas aeruginosa polysaccharide Psl supports airway microbial community development
- Sara N. Stoner
- , Joshua J. Baty
- & Jessica A. Scoffield
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Article
| Open AccessExperimental evaluation of ecological principles to understand and modulate the outcome of bacterial strain competition in gut microbiomes
- Rafael R. Segura Munoz
- , Sara Mantz
- & Amanda E. Ramer-Tait
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Article
| Open AccessMammalian gut metabolomes mirror microbiome composition and host phylogeny
- Rachel Gregor
- , Maraike Probst
- & Itzhak Mizrahi
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Article
| Open AccessCarbon assimilating fungi from surface ocean to subseafloor revealed by coupled phylogenetic and stable isotope analysis
- William D. Orsi
- , Aurèle Vuillemin
- & Gonzalo V. Gomez-Saez
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Article
| Open AccessIn vitro interaction network of a synthetic gut bacterial community
- Anna S. Weiss
- , Anna G. Burrichter
- & Bärbel Stecher
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Article
| Open AccessMechanisms underlying interactions between two abundant oral commensal bacteria
- Dasith Perera
- , Anthony McLean
- & Matthew Ramsey
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Review Article
| Open AccessPlant-microbe interactions in the phyllosphere: facing challenges of the anthropocene
- Rosaëlle Perreault
- & Isabelle Laforest-Lapointe
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Perspective
| Open AccessPhages in the infant gut: a framework for virome development during early life
- Michael Shamash
- & Corinne F. Maurice
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Article
| Open AccessNetwork structure of resource use and niche overlap within the endophytic microbiome
- Matthew Michalska-Smith
- , Zewei Song
- & Linda L. Kinkel
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Article
| Open AccessQuantifying the effects of hydrogen on carbon assimilation in a seafloor microbial community associated with ultramafic rocks
- Ömer K. Coskun
- , Aurèle Vuillemin
- & William D. Orsi
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Cytokinin drives assembly of the phyllosphere microbiome and promotes disease resistance through structural and chemical cues
- Rupali Gupta
- , Dorin Elkabetz
- & Maya Bar
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Article
| Open AccessModeling host-associating microbes under selection
- Florence Bansept
- , Nancy Obeng
- & Arne Traulsen
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Perspective
| Open AccessOpen challenges for microbial network construction and analysis
- Karoline Faust
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Article
| Open AccessMicrobial community structure in hadal sediments: high similarity along trench axes and strong changes along redox gradients
- Clemens Schauberger
- , Ronnie N. Glud
- & Bo Thamdrup
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Article
| Open AccessCompositional and genetic alterations in Graves’ disease gut microbiome reveal specific diagnostic biomarkers
- Qiyun Zhu
- , Qiangchuan Hou
- & Jiachao Zhang