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| Open AccessAn extended genotyping framework for Salmonella enterica serovar Typhi, the cause of human typhoid
Typhoid fever is caused by Salmonella enterica serovar Typhi (S. Typhi). This study examines ∼2,000 clinical isolates of S. Typhi to show highly structured/geographically restricted genomes except rapidly disseminating H58 subclade, and design a genotyping framework for tracking the disease.
- Vanessa K. Wong
- , Stephen Baker
- & Ben Amos
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Article
| Open AccessProjected increase in amyotrophic lateral sclerosis from 2015 to 2040
The socioeconomic burden of amyotrophic lateral sclerosis (ALS) is high, but the projected number of cases in the upcoming years is unclear. Here, the authors estimate the number and distribution of ALS cases to 2040, and show that cases are projected to increase, particularly in developing nations.
- Karissa C. Arthur
- , Andrea Calvo
- & Bryan J. Traynor
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Article
| Open AccessIntestinal microbiome is related to lifetime antibiotic use in Finnish pre-school children
The impact of antibiotics on the microbiome and health of children is poorly understood. Here, Korpela et al. study the gut microbiome of 142 children and show that the use of macrolides, but not penicillins, is associated with long-lasting shifts in microbiota composition and increased risk of asthma and overweight.
- Katri Korpela
- , Anne Salonen
- & Willem M. de Vos
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Article
| Open AccessExome-wide association analysis reveals novel coding sequence variants associated with lipid traits in Chinese
An important risk factor for coronary artery disease is the level of blood lipids. Here the authors conduct an exome-wide association study in Chinese cohorts and identify three novel loci associated with lipid levels as well as three Asian-specific variants in known loci.
- Clara S. Tang
- , He Zhang
- & Wei Gao
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| Open AccessGenome-wide association study identifies new susceptibility loci for adolescent idiopathic scoliosis in Chinese girls
The authors perform a genome-wide association study of adolescent idiopathic scoliosis patients of Han Chinese descent, and identify 3 new loci for disease susceptibility.
- Zezhang Zhu
- , Nelson Leung-Sang Tang
- & Jack Chun-Yiu Cheng
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| Open AccessDefining the relationship between infection prevalence and clinical incidence of Plasmodium falciparum malaria
Mathematical models are used to predict malaria burden to inform disease control efforts. Here, Cameron et al. use Bayesian statistics to calibrate previous models against a data set of age-structured prevalence and incidence, generating stratified forecasts of the prevalence–incidence relationship.
- Ewan Cameron
- , Katherine E. Battle
- & Peter W. Gething
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Article
| Open AccessGenome-wide association of polycystic ovary syndrome implicates alterations in gonadotropin secretion in European ancestry populations
Polycystic Ovary Sydrome is a highly heritable, complex reproductive disorder with unknown underlying genetic factors. Here Hayes and Urbanek et al. identify three loci in European women strongly associated with neuroendocrine changes and disease susceptibility.
- M. Geoffrey Hayes
- , Margrit Urbanek
- & Andrea Dunaif
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Fat, fibre and cancer risk in African Americans and rural Africans
African Americans have much higher colon cancer rates than rural South Africans, which is associated with dietary and metabolic differences. Here, O’Keefe et al.show that switching quantities of fat and fibre leads to reciprocal changes in gut microbiota, metabolites and cancer biomarkers.
- Stephen J. D. O’Keefe
- , Jia V. Li
- & Erwin G. Zoetendal
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Identification of myopia-associated WNT7B polymorphisms provides insights into the mechanism underlying the development of myopia
Myopia is a significant and increasing public health concern. Here Miyake et al. conduct a genome-wide association study and identify WNT7Bas a susceptibility gene across different ethnic groups, suggesting a possible role in the development of myopia.
- Masahiro Miyake
- , Kenji Yamashiro
- & Nagahisa Yoshimura
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Genome-wide association study identifies a new susceptibility locus for cleft lip with or without a cleft palate
Cleft lip is one of the most common congenital birth defects with substantial impairments to quality of life. Here, Sun et al. identify a new locus associated with cleft lip in diverse Chinese populations.
- Yimin Sun
- , Yongqing Huang
- & Yinxue Yang
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Evidence for zoonotic potential of ovine scrapie prions
Scrapie, a form of prion disease that affects sheep and goats, is believed not to be transmissible to humans. Using transgenic mice expressing human prion protein as a model of cross-species prion transmission, the authors show that ovine scrapie may possess potential to be passed on to humans.
- Hervé Cassard
- , Juan-Maria Torres
- & Olivier Andréoletti
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African origin of the malaria parasite Plasmodium vivax
Plasmodium vivax, the leading cause of human malaria in Asia and Latin America, is thought to have an Asian origin. Here, the authors show that wild chimpanzees and gorillas in Africa are infected with parasites that are closely related to P. vivax, indicating an African origin for this species.
- Weimin Liu
- , Yingying Li
- & Paul M. Sharp
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| Open AccessEstimates of the changing age-burden of Plasmodium falciparum malaria disease in sub-Saharan Africa
Reduction in malaria transmission has changed the age pattern of malaria incidence. This study brings insights into the changes in age distributions of clinical malaria across Africa, with importance for improving within-population targeting of malaria control interventions.
- Jamie T. Griffin
- , Neil M. Ferguson
- & Azra C. Ghani
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Article
| Open AccessHuman gut microbiota community structures in urban and rural populations in Russia
The structure of the human gut microbiota has been shown to vary between populations. Tyakht et al.analyse the gut microbiota assembly from Russian individuals living in urban and rural areas, and compare these with previously studied populations.
- Alexander V. Tyakht
- , Elena S. Kostryukova
- & Vadim M. Govorun
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| Open AccessFactors determining the occurrence of submicroscopic malaria infections and their relevance for control
Malaria can persist at levels that escape detection by standard microscopy, but can be detected by PCR. Okell et al.now show that rates of submicroscopic infection can be predicted using more widely available microscopy data, and are most epidemiologically significant in areas with low malaria transmission.
- Lucy C. Okell
- , Teun Bousema
- & Chris J. Drakeley
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| Open AccessEstimating the potential public health impact of seasonal malaria chemoprevention in African children
Seasonal malaria chemoprevention can lower the incidence of malaria in areas where transmission is highly periodical. Combining data on rainfall, population and malaria endemicity, Cairnset al. identify geographical areas in sub-Saharan Africa where this intervention is likely to be effective and cost-effective.
- Matthew Cairns
- , Arantxa Roca-Feltrer
- & Brian M. Greenwood
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Isoniazid resistance without a loss of fitness in Mycobacterium tuberculosis
The treatment ofMycobacterium tuberculosis with drugs such as isoniazid often results in drug resistance, but the mechanisms leading to the resistance are not fully known. In this study, an M. tuberculosisstrain lacking the sigma factor I is shown to be resistant to isoniazid.
- Jong-Hee Lee
- , Nicole C. Ammerman
- & William R. Bishai
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| Open AccessWind direction and proximity to larval sites determines malaria risk in Kilifi District in Kenya
Spatial epidemiology studies identify malaria hotspots, which sustain transmission and so could be targeted by control programmes. This study uses spatial data on larval sites and malaria episodes to show that transmission can be disrupted by targeting vector breeding sites close to and downwind of malaria hotspots.
- Janet T. Midega
- , Dave L. Smith
- & Philip Bejon
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Location-specific patterns of exposure to recent pre-pandemic strains of influenza A in southern China
Population demographics affect influenza transmission at large spatial scales. Here, influenza immunity is shown to vary spatially in a way unexplained by differences in demographics, suggesting that there are aspects of locations that drive influenza transmission other than individual and household risk factors.
- Justin Lessler
- , Derek A.T. Cummings
- & Steven Riley
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Long-term projections and acclimatization scenarios of temperature-related mortality in Europe
The sensitivity of human populations to rising global temperatures is not yet fully understood. The authors describe the link between temperature and daily mortality in over 200 European regions and calculate projections of mortality from climate models under greenhouse gas scenario simulations.
- Joan Ballester
- , Jean-Marie Robine
- & Xavier Rodó
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| Open AccessA quantitative analysis of transmission efficiency versus intensity for malaria
Recent work has shown that the transmission of malaria from mosquito to human is inefficient. In this study, an analysis of published literature is used to understand this inefficiency, which is likely due to heterogeneous biting, where 20% of people receive 80% of the bites.
- David L. Smith
- , Chris J. Drakeley
- & Simon I. Hay