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Volume 24 Issue 12, December 2023

Inspired by the Viewpoint on p809

Cover design: Patrick Morgan

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Research Highlights

  • Legnini et al. report in Nature Methods their new optogenetic method for controlling gene expression in organoids that can be coupled with single-cell and spatial transcriptomics.

    • Henry Ertl
    Research Highlight
  • Three papers in Nature report on the largest open-access plasma proteomics dataset to date, a valuable resource for understanding human disease and the identification of drug targets.

    • Michael Attwaters
    Research Highlight
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Journal Club

  • Leon Mutesa highlights a 2009 article by Yehuda and Bierer that considered the relevance of epigenetic mechanisms to post-traumatic stress disorder, which inspired his own research on the importance of DNA methylation changes in trauma survivors.

    • Leon Mutesa
    Journal Club
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Viewpoint

  • Five leading researchers provide their perspectives on our current understanding of pioneer factors and their important gene regulatory roles in cell differentiation, cell fate determination and reprogramming.

    • Martha L. Bulyk
    • Jacques Drouin
    • Kenneth S. Zaret
    Viewpoint
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Reviews

  • In this Review, the authors describe how the application of new technologies to the microRNA (miRNA) field has yielded key insights into miRNA biology. The authors summarize our current understanding of miRNA biogenesis, function and processing, and highlight challenges to address in future research.

    • Renfu Shang
    • Seungjae Lee
    • Eric C. Lai
    Review Article
  • Incongruence occurs when phylogenetic trees show conflicting evolutionary histories such as patterns of branching or relationships among taxa. This Review discusses the biological and analytical factors that lead to incongruence, methodological advances to identify and resolve incongruence, and avenues for future research.

    • Jacob L. Steenwyk
    • Yuanning Li
    • Antonis Rokas
    Review Article
  • Control can be applied to alter the ecological or evolutionary trajectory of a target system towards a predefined objective. In this Review, the authors discuss the aims, applications, mechanisms and dynamics of eco-evolutionary control across different biological systems.

    • Michael Lässig
    • Ville Mustonen
    • Armita Nourmohammad
    Review Article
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Amendments & Corrections

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