Table of contents
From the editors
p1 | doi:10.1038/nrg2517
Research Highlights
Gene regulation: Modelling by building blocks | PDF (232 KB)
p3 | doi:10.1038/nrg2510
Genomics: Distinguishing drivers from passengers | PDF (193 KB)
p4 | doi:10.1038/nrg2512
Ageing: A SIRTain role in ageing | PDF (158 KB)
p4 | doi:10.1038/nrg2514
Imprinting: Transcriptomics delivers | PDF (120 KB)
p4 | doi:10.1038/nrg2515
Human disease: Genome-wide insights into lipid levels | PDF (154 KB)
p5 | doi:10.1038/nrg2513
Plant development: Growing with time | PDF (193 KB)
p6 | doi:10.1038/nrg2508
Evolution: Something new | PDF (173 KB)
p6 | doi:10.1038/nrg2511
In brief
Small RNAS | Evolution | Ageing | Gene regulation | PDF (125 KB)
p6 | doi:10.1038/nrg2518
In brief
Gene regulation | Genome variation | Transcriptomics | Human disease | PDF (126 KB)
p7 | doi:10.1038/nrg2519
Ethics watch
Direct-to-consumer genome scanning services. Also for children? | PDF (244 KB)
p8 | doi:10.1038/nrg2501
Reviews
Genotype–phenotype databases: challenges and solutions for the post-genomic era
Gudmundur A. Thorisson, Juha Muilu & Anthony J. Brookes
p9 | doi:10.1038/nrg2483
Rapid increases in the quantity and complexity of data generated by modern biological research present huge challenges for database resources. Revised database models and web-based technological advances could lead to powerful new tools for disseminating and interpreting genotype–phenotype information.
RNA-based gene duplication: mechanistic and evolutionary insights
Henrik Kaessmann, Nicolas Vinckenbosch & Manyuan Long
p19 | doi:10.1038/nrg2487
Gene duplication can occur via insertion of reverse transcribed mRNAs into the genome. Although originally thought to be non-functional, recent studies have uncovered how these retrocopies can acquire novel functions, and how patterns of retroposition can give unexpected insights into genome evolution.
The many roles of histone deacetylases in development and physiology: implications for disease and therapy
Michael Haberland, Rusty L. Montgomery & Eric N. Olson
p32 | doi:10.1038/nrg2485
The expression of many histone deacetylase (HDAC) isoforms in eukaryotic cells raises questions regarding their specificity and the programmes of gene expression that they control. HDAC knockout mice are a powerful tool for addressing these questions and have revealed that individual HDACs have specific functions in development and disease.
Detecting shared pathogenesis from the shared genetics of immune-related diseases
Alexandra Zhernakova, Cleo C. van Diemen & Cisca Wijmenga
p43 | doi:10.1038/nrg2489
Recent genome-wide association studies have provided evidence that some genetic loci are associated with disease susceptibility for several different immune-related disorders. Analysis of shared genetics can highlight shared pathogenic pathways that could become the focus for therapeutic intervention.
Perspectives
Article series: Applications of next-generation sequencing
Innovation
RNA-Seq: a revolutionary tool for transcriptomics
Zhong Wang, Mark Gerstein & Michael Snyder
p57 | doi:10.1038/nrg2484
The development of high-throughput DNA sequencing methods provides a new method for mapping and quantifying transcriptomes — RNA sequencing (RNA-Seq). This article explains how RNA-Seq works, the challenges it faces and how it is changing our view of eukaryotic transcriptomes.
Essay
Integrative biology — a strategy for systems biomedicine
Edison T. Liu
p64 | doi:10.1038/nrg2488
Systems biomedicine seeks to harness the complexity of human molecular physiology in order to move towards quick translation from basic biology to clinical applications. The Director of the Genome Institute of Singapore, Edison T. Liu, describes the advantages of this approach from his personal perspective.
Erratum: Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation
Luis López-Maury, Samuel Marguerat & Jürg Bähler
p68 | doi:10.1038/nrg2500
Corrigendum: South Africa: from species cradle to genomic applications
Billie-Jo Hardy, Béatrice Séguin, Raj Ramesar, Peter A. Singer & Abdallah S. Daar
p68 | doi:10.1038/nrg2503


