Table of contents


From the editors

p1 | doi:10.1038/nrg2517

Top

Research Highlights

Gene regulation: Modelling by building blocks | PDF (232 KB)

p3 | doi:10.1038/nrg2510

Genomics: Distinguishing drivers from passengers | PDF (193 KB)

p4 | doi:10.1038/nrg2512

Ageing: A SIRTain role in ageing | PDF (158 KB)

p4 | doi:10.1038/nrg2514

Imprinting: Transcriptomics delivers | PDF (120 KB)

p4 | doi:10.1038/nrg2515

Human disease: Genome-wide insights into lipid levels | PDF (154 KB)

p5 | doi:10.1038/nrg2513

Plant development: Growing with time | PDF (193 KB)

p6 | doi:10.1038/nrg2508

Evolution: Something new | PDF (173 KB)

p6 | doi:10.1038/nrg2511

In brief

Small RNAS | Evolution | Ageing | Gene regulation | PDF (125 KB)

p6 | doi:10.1038/nrg2518

Top

Reviews

Genotype–phenotype databases: challenges and solutions for the post-genomic era

Gudmundur A. Thorisson, Juha Muilu & Anthony J. Brookes

p9 | doi:10.1038/nrg2483

Rapid increases in the quantity and complexity of data generated by modern biological research present huge challenges for database resources. Revised database models and web-based technological advances could lead to powerful new tools for disseminating and interpreting genotype–phenotype information.

RNA-based gene duplication: mechanistic and evolutionary insights

Henrik Kaessmann, Nicolas Vinckenbosch & Manyuan Long

p19 | doi:10.1038/nrg2487

Gene duplication can occur via insertion of reverse transcribed mRNAs into the genome. Although originally thought to be non-functional, recent studies have uncovered how these retrocopies can acquire novel functions, and how patterns of retroposition can give unexpected insights into genome evolution.

The many roles of histone deacetylases in development and physiology: implications for disease and therapy

Michael Haberland, Rusty L. Montgomery & Eric N. Olson

p32 | doi:10.1038/nrg2485

The expression of many histone deacetylase (HDAC) isoforms in eukaryotic cells raises questions regarding their specificity and the programmes of gene expression that they control. HDAC knockout mice are a powerful tool for addressing these questions and have revealed that individual HDACs have specific functions in development and disease.

Detecting shared pathogenesis from the shared genetics of immune-related diseases

Alexandra Zhernakova, Cleo C. van Diemen & Cisca Wijmenga

p43 | doi:10.1038/nrg2489

Recent genome-wide association studies have provided evidence that some genetic loci are associated with disease susceptibility for several different immune-related disorders. Analysis of shared genetics can highlight shared pathogenic pathways that could become the focus for therapeutic intervention.

Top

Perspectives

Innovation

RNA-Seq: a revolutionary tool for transcriptomics

Zhong Wang, Mark Gerstein & Michael Snyder

p57 | doi:10.1038/nrg2484

The development of high-throughput DNA sequencing methods provides a new method for mapping and quantifying transcriptomes — RNA sequencing (RNA-Seq). This article explains how RNA-Seq works, the challenges it faces and how it is changing our view of eukaryotic transcriptomes.

Essay

Integrative biology — a strategy for systems biomedicine

Edison T. Liu

p64 | doi:10.1038/nrg2488

Systems biomedicine seeks to harness the complexity of human molecular physiology in order to move towards quick translation from basic biology to clinical applications. The Director of the Genome Institute of Singapore, Edison T. Liu, describes the advantages of this approach from his personal perspective.

Erratum: Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation

Luis López-Maury, Samuel Marguerat & Jürg Bähler

p68 | doi:10.1038/nrg2500

Corrigendum: South Africa: from species cradle to genomic applications

Billie-Jo Hardy, Béatrice Séguin, Raj Ramesar, Peter A. Singer & Abdallah S. Daar

p68 | doi:10.1038/nrg2503

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