Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Protocol
  • Published:

Preparation of aptamer-linked gold nanoparticle purple aggregates for colorimetric sensing of analytes

Abstract

Aptamers are single-stranded DNA or RNA molecules that can bind target molecules with high affinity and specificity. The conformation of an aptamer usually changes upon binding to its target analyte, and this property has been used in a wide variety of sensing applications, including detection based on fluorescence intensity, polarization, energy transfer, electrochemistry or color change. Colorimetric sensors are particularly important because they minimize or eliminate the necessity of using expensive and complicated instruments. Among the many colorimetric sensing strategies, metallic nanoparticle-based detection is desirable because of the high extinction coefficients and strong distance-dependent optical properties of the nanoparticles. Here, we describe a protocol for the preparation of aptamer-linked gold nanoparticle purple aggregates that undergo fast disassembly into red dispersed nanoparticles upon binding of target analytes. This method has proved to be generally applicable for colorimetric sensing of a broad range of analytes. The time range for the entire protocol is 5 d, including synthesis and functionalization of nanoparticles, preparation of nanoparticle aggregates and sensing.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Figure 1: Adenosine-induced disassembly of nanoparticle aggregates for colorimetric detection of adenosine.
Figure 2: Colorimetric detection of adenosine with aptamer-assembled nanoparticle aggregates.

Similar content being viewed by others

References

  1. Ellington, A.D. & Szostak, J.W. In vitro selection of RNA molecules that bind specific ligands. Nature 346, 818–822 (1990).

    Article  CAS  PubMed  Google Scholar 

  2. Tuerk, C. & Gold, L. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 249, 505–510 (1990).

    Article  CAS  PubMed  Google Scholar 

  3. Wilson, D.S. & Szostak, J.W. In vitro selection of functional nucleic acids. Annu. Rev. Biochem. 68, 611–647 (1999).

    Article  CAS  PubMed  Google Scholar 

  4. Famulok, M. Oligonucleotide aptamers that recognize small molecules. Curr. Opin. Struct. Biol. 9, 324–329 (1999).

    Article  CAS  PubMed  Google Scholar 

  5. Conrad, R.C., Giver, L., Tian, Y. & Ellington, A.D. In vitro selection of nucleic acid aptamers that bind proteins. Methods Enzymol. 267, 336–367 (1996).

    Article  CAS  PubMed  Google Scholar 

  6. Cox, J.C. & Ellington, A.D. Automated selection of anti-protein aptamers. Bioorg. Med. Chem. 9, 2525–2531 (2001).

    Article  CAS  PubMed  Google Scholar 

  7. Mendonsa, S.D. & Bowser, M.T. In vitro evolution of functional DNA using capillary electrophoresis. J. Am. Chem. Soc. 126, 20–21 (2004).

    Article  CAS  PubMed  Google Scholar 

  8. Berezovski, M. et al. Nonequilibrium capillary electrophoresis of equilibrium mixtures: a universal tool for development of aptamers. J. Am. Chem. Soc. 127, 3165–3171 (2005).

    Article  CAS  PubMed  Google Scholar 

  9. Nutiu, R. & Li, Y. Structure-switching signaling aptamers. J. Am. Chem. Soc. 125, 4771–4778 (2003).

    Article  CAS  PubMed  Google Scholar 

  10. Levy, M., Cater, S.F. & Ellington, A.D. Quantum-dot aptamer beacons for the detection of proteins. ChemBioChem 6, 2163 (2005).

  11. Famulok, M., Mayer, G. & Blind, M. Nucleic acid aptamers—from selection in vitro to applications in vivo. Acc. Chem. Res. 33, 591–599 (2000).

    Article  CAS  PubMed  Google Scholar 

  12. Liu, J. & Lu, Y. Fast colorimetric sensing of adenosine and cocaine based on a general sensor design involving aptamers and nanoparticles. Angew. Chem. Int. Ed. Engl. 45, 90 (2006).

  13. Stojanovic, M.N. & Landry, D.W. Aptamer-based colorimetric probe for cocaine. J. Am. Chem. Soc. 124, 9678–9679 (2002).

    Article  CAS  PubMed  Google Scholar 

  14. Pavlov, V., Xiao, Y., Shlyahovsky, B. & Willner, I. Aptamer-functionalized Au nanoparticles for the amplified optical detection of thrombin. J. Am. Chem. Soc. 126, 11768–11769 (2004).

    Article  CAS  PubMed  Google Scholar 

  15. Huang, C.-C., Huang, Y.-F., Cao, Z., Tan, W. & Chang, H.-T. Aptamer-modified gold nanoparticles for colorimetric determination of platelet-derived growth factors and their receptors. Anal. Chem. 77, 5735–5741 (2005).

    Article  CAS  PubMed  Google Scholar 

  16. Liu, J. & Lu, Y. A colorimetric lead biosensor using DNAzyme-directed assembly of gold nanoparticles. J. Am. Chem. Soc. 125, 6642–6643 (2003).

    Article  CAS  PubMed  Google Scholar 

  17. Liu, J. & Lu, Y. Stimuli-responsive disassembly of nanoparticle aggregates for light-up colorimetric sensing. J. Am. Chem. Soc. 127, 12677–12683 (2005).

    Article  CAS  PubMed  Google Scholar 

  18. Mirkin, C.A., Letsinger, R.L., Mucic, R.C. & Storhoff, J.J. A DNA-based method for rationally assembling nanoparticles into macroscopic materials. Nature 382, 607–609 (1996).

    Article  CAS  PubMed  Google Scholar 

  19. Hermann, T. & Patel, D.J. Adaptive recognition by nucleic acid aptamers. Science 287, 820–825 (2000).

    Article  CAS  PubMed  Google Scholar 

  20. Nutiu, R. & Li, Y. Structure-switching signaling aptamers: transducing molecular recognition into fluorescence signaling. Chem. Eur. J. 10, 1868–1876 (2004).

    Article  CAS  PubMed  Google Scholar 

  21. Storhoff, J.J., Elghanian, R., Mucic, R.C., Mirkin, C.A. & Letsinger, R.L. One-pot colorimetric differentiation of polynucleotides with single base imperfections using gold nanoparticle probes. J. Am. Chem. Soc. 120, 1959–1964 (1998).

    Article  CAS  Google Scholar 

  22. Handley, D.A. Methods for synthesis of colloidal gold. in Colloidal Gold Principles, Methods, and Applications, Vol. 1 (ed. Hayat, M.A.) 13–32 (Academic Press, San Diego, 1989).

    Google Scholar 

  23. Zuker, M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31, 3406–3415 (2003).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

Download references

Acknowledgements

We wish to thank the reviewers for their critical review of the protocol and for their helpful suggestions. This material is based on work supported by the U.S. Army Research Laboratory and the U.S. Army Research Office under grant number DAAD19-03-1-0227, by the National Science Foundation through the Science and Technology Center of Advanced Materials for Purification of Water with Systems (WaterCAMPWS)(CTS-0120978) and the Nanoscale Science and Engineering Center (NSEC) program (DMR-0117792).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Yi Lu.

Ethics declarations

Competing interests

The authors declare no competing financial interests.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Liu, J., Lu, Y. Preparation of aptamer-linked gold nanoparticle purple aggregates for colorimetric sensing of analytes. Nat Protoc 1, 246–252 (2006). https://doi.org/10.1038/nprot.2006.38

Download citation

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1038/nprot.2006.38

This article is cited by

Comments

By submitting a comment you agree to abide by our Terms and Community Guidelines. If you find something abusive or that does not comply with our terms or guidelines please flag it as inappropriate.

Search

Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing