Genome-wide association study of follicular lymphoma identifies a risk locus at 6p21.32

Journal name:
Nature Genetics
Volume:
42,
Pages:
661–664
Year published:
DOI:
doi:10.1038/ng.626
Received
Accepted
Published online

To identify susceptibility loci for non-Hodgkin lymphoma subtypes, we conducted a three-stage genome-wide association study. We identified two variants associated with follicular lymphoma at 6p21.32 (rs10484561, combined P = 1.12 × 10−29 and rs7755224, combined P = 2.00 × 10−19; r2 = 1.0), supporting the idea that major histocompatibility complex genetic variation influences follicular lymphoma susceptibility. We also found confirmatory evidence of a previously reported association between chronic lymphocytic leukemia/small lymphocytic lymphoma and rs735665 (combined P = 4.24 × 10−9).

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Author information

Affiliations

  1. Division of Environmental Health Sciences, School of Public Health, University of California, Berkeley, Berkeley, California, USA.

    • Lucia Conde,
    • Nicholas K Akers,
    • Luz Agana,
    • Jacques Riby,
    • Martyn T Smith &
    • Christine F Skibola
  2. Molecular Microbiology and Biotechnology Department, Tel-Aviv University, Tel-Aviv, Israel.

    • Eran Halperin
  3. International Computer Science Institute, Berkeley, California, USA.

    • Eran Halperin
  4. Integrative Cancer Genomics Division, Translational Genomics Research Institute (TGen), Phoenix, Arizona, USA.

    • Kevin M Brown
  5. Department of Medicine, Clinical Epidemiology Unit, Karolinska Institutet, Stockholm, Sweden.

    • Karin E Smedby
  6. Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, USA.

    • Nathaniel Rothman,
    • Patricia Hartge,
    • Lindsay M Morton,
    • Sophia S Wang,
    • Mark P Purdue,
    • Qing Lan,
    • Shelia H Zahm,
    • Neil E Caporaso,
    • Lynn R Goldin &
    • Stephen Chanock
  7. Cancer Epidemiology, German Cancer Research Center, Heidelberg, Germany.

    • Alexandra Nieters,
    • Nikolaus Becker &
    • Katja Butterbach
  8. Molecular Epidemiology, Centre of Chronic Immunodeficiency, University of Freiburg Medical Centre, Freiburg, Germany.

    • Alexandra Nieters
  9. Mayo Clinic College of Medicine, Rochester, Minnesota, USA.

    • Susan L Slager,
    • Sara J Achenbach,
    • Timothy G Call,
    • James R Cerhan,
    • Julie M Cunningham,
    • Curtis A Hanson,
    • Neil E Kay,
    • Jose F Leis,
    • Kari G Rabe &
    • Celine M Vachon
  10. British Columbia Cancer Research Center, British Columbia Cancer Agency, Vancouver, British Columbia, Canada.

    • Angela Brooks-Wilson &
    • John J Spinelli
  11. Department of Biomedical Physiology and Kinesiology, Simon Fraser University, Vancouver, British Columbia, Canada.

    • Angela Brooks-Wilson
  12. Human Genetics, Genome Institute of Singapore, A*STAR, Singapore.

    • Jianjun Liu &
    • Hui-Qi Low
  13. Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden.

    • Hans-Olov Adami,
    • Hatef Darabi &
    • Keith Humphreys
  14. Department of Epidemiology, Harvard School of Public Health, Boston, Massachusetts, USA.

    • Hans-Olov Adami
  15. Department of Epidemiology Research, Statens Serum Institut, Copenhagen, Denmark.

    • Henrik Hjalgrim &
    • Mads Melbye
  16. Cancer Prevention Institute of California (formerly the Northern California Cancer Center), Fremont, California, USA.

    • Ellen T Chang
  17. Division of Epidemiology, Department of Health Research and Policy, Stanford University School of Medicine, Stanford, California, USA.

    • Ellen T Chang
  18. Department of Oncology and Pathology, Karolinska University Hospital, Karolinska Institutet, Stockholm, Sweden.

    • Bengt Glimelius
  19. Department of Oncology, Radiology and Clinical Immunology, Akademiska Hospital, Uppsala University, Uppsala, Sweden.

    • Bengt Glimelius
  20. Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, California, USA.

    • Wendy Cozen
  21. Division of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington, USA.

    • Scott Davis
  22. Department of Family Medicine and Public Health Sciences, Wayne State University, Detroit, Michigan, USA.

    • Maryjean Schenk
  23. Division of Etiology, Beckman Research Institute and the City of Hope, Duarte, California, USA.

    • Sophia S Wang
  24. Sydney School of Public Health, The University of Sydney, Sydney, Australia.

    • Bruce Armstrong &
    • Anne Kricker
  25. Department of Haematology, St. Vincent's Hospital, Sydney, Australia.

    • Sam Milliken
  26. University of New South Wales Cancer Research Center, Prince of Wales Clinical School, Sydney, Australia.

    • Claire M Vajdic
  27. International Prevention Research Institute, Lyon, France.

    • Peter Boyle &
    • Paolo Boffetta
  28. School of Public Health, Yale University, New Haven, Connecticut, USA.

    • Yawei Zhang &
    • Tongzhang Zheng
  29. Unit of Infections and Cancer (UNIC), Cancer Epidemiology Research Programme, Catalan Institute of Oncology, Barcelona, Spain.

    • Yolanda Benavente &
    • Silvia de Sanjosé
  30. The Tisch Cancer Institute, Mount Sinai School of Medicine, New York, New York, USA.

    • Paolo Boffetta
  31. International Agency for Research on Cancer, Lyon, France.

    • Paul Brennan
  32. Department of Public Health, Occupational Health Section, University of Cagliari, Cagliari, Italy.

    • Pierluigi Cocco
  33. Masaryk Memorial Cancer Institute, Brno, Czech Republic.

    • Lenka Foretova
  34. Registry of Hematological Malignancies, EA4184, University of Burgundy, University Hospital of Dijon, Dijon, France.

    • Marc Maynadié
  35. School of Public Health and Population Science, University College Dublin, Dublin, Ireland.

    • Anthony Staines
  36. School of Population and Public Health, University of British Columbia, Vancouver, British Columbia, Canada.

    • John J Spinelli
  37. University of Utah School of Medicine, Department of Biomedical Informatics, Salt Lake City, Utah, USA.

    • Nicola J Camp &
    • Martha Glenn
  38. Department of Medicine, Duke University Medical Center, Durham, North Carolina, USA.

    • Mark C Lanasa &
    • J Brice Weinberg
  39. Division of Cell and Gene Therapies, Office of Cellular, Tissues and Gene Therapies, US Food and Drug Administration, US National Institutes of Health, Bethesda, Maryland, USA.

    • Gerald E Marti
  40. Moores Cancer Center, University of California, San Diego, La Jolla, California, USA.

    • Laura Z Rassenti
  41. Prevention and Etiology Research Program, Masonic Cancer Center, University of Minnesota, Minneapolis, Minnesota, USA.

    • Logan G Spector
  42. Department of Epidemiology, The University of Texas M.D. Anderson Cancer Center, Houston, Texas, USA.

    • Sara S Strom
  43. Department of Epidemiology and Biostatistics, University of California, San Francisco, San Francisco, California, USA.

    • Elizabeth A Holly &
    • Paige M Bracci

Contributions

Design and interpretation of overall study: C.F.S., E.H., K.M.B., M.T.S., P.M.B. Primary data analysis: L.C., E.H. Drafting of manuscript: L.C., C.F.S. Critical revision of manuscript: E.H., K.M.B., A.B.-W., B.A., C.M. Vajdic., S.C., M.T.S., P.M.B. Study design, genotyping and statistical analysis of individual studies: SF1, SF1B and SF2: L.C., E.H., J.R., N.K.A., L.A., E.A.H., M.T.S., P.M.B., C.F.S. SCALE: K.E.S., J.L., H.-O.A., H.D., H.H., H.-Q.L., K.H., M. Melbye, E.T.C., B.G. NCI-SEER: N.R., W.C., S.D., P.H., L.M.M., M.S., S.S.W., S.C., J.R.C. NSW: B.A., A.K., S.M., M.P.P., C.M. Vajdic. Yale: P. Boyle, Q.L., S.H.Z., Y.Z., T.Z. EpiLymph: A.N., N.B., Y.B., P. Boffetta, P. Brennan, K.B., P.C., L.F., M. Maynadié, S.de.S., A.S. BC: A.B.-W., J.J.S. Mayo-GEC: S.L.S., S.J.A., T.G.C., M.G., N.J.C., N.E.C., J.R.C., J.M.C., L.R.G., C.A.H., N.E.K., M.C.L., J.F.L., G.E.M., K.G.R., L.Z.R., L.G.S., S.S.S., C.M. Vachon, J.B.W. All authors contributed to the final manuscript and approved its content.

Competing financial interests

The authors declare no competing financial interests.

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    Supplementary Tables 1–11, Supplementary Figures 1–5 and Supplementary Methods

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