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Proteasomal substrate selection. Prakash et al. (p 29) mixed and matched a ubiquitin tag and an unstructured region, two signals for proteasomal targeting, on the protein complex components barnase and barstar. Attaching ubiquitin to barstar and an unstructured region to barnase resulted in degradation of barnase through an in trans targeting mechanism (see also News and Views by Wandless on p 3). Barstar modified with four ubiquitin domains is shown targeting the unstructured region of barnase to the proteasome. Cover art by Erin Boyle based on images provided by Sumit Prakash and Tomonao Inobe.
Protein ubiquitination is an important degradative signal, yet not all ubiquitinated proteins are degraded. Recent results reveal insights into the proteasome's strategy for integrating biophysical signals when choosing substrates for degradation.
Peptidases are enzymes that trim small protein fragments called peptides to regulate their biological functions. A new method opens the door to chasing down and identifying important cutting events mediated by peptidases involved in metabolic regulation.
Cytochrome P450 enzymes selectively oxidize relatively unactivated sites in a range of model drug-like substrates in vitro. The hydroxylated products can be transformed into selectively fluorinated systems, providing a rapid sequential method for the identification, activation and fluorination of saturated sites in drug candidates.
A powerful technology called global protein stability profiling allows rates of protein turnover to be determined for a substantial fraction of the human proteome in a single experiment. This approach sets the stage for systems-level analyses of the dynamics of the mammalian proteome.