Letter

Nature 459, 731-735 (4 June 2009) | doi:10.1038/nature07870; Received 14 October 2008; Accepted 6 February 2009

Metamorphic enzyme assembly in polyketide diversification

Liangcai Gu1,2, Bo Wang3, Amol Kulkarni6,8, Todd W. Geders1,8, Rashel V. Grindberg7, Lena Gerwick7, Kristina Håkansson3, Peter Wipf6, Janet L. Smith1,4, William H. Gerwick7 & David H. Sherman1,2,3,5

  1. Life Sciences Institute,
  2. Department of Medicinal Chemistry,
  3. Department of Chemistry,
  4. Department of Biological Chemistry,
  5. Department of Microbiology & Immunology, University of Michigan, Ann Arbor, Michigan 48109, USA
  6. Department of Chemistry and Center for Chemical Methodologies & Library Development, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA
  7. Scripps Institution of Oceanography & Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California at San Diego, La Jolla, California 92093, USA
  8. These authors contributed equally to this work.

Correspondence to: David H. Sherman1,2,3,5 Correspondence and requests for materials should be addressed to D.H.S. (Email: davidhs@umich.edu).

Natural product chemical diversity is fuelled by the emergence and ongoing evolution of biosynthetic pathways in secondary metabolism1. However, co-evolution of enzymes for metabolic diversification is not well understood, especially at the biochemical level. Here, two parallel assemblies with an extraordinarily high sequence identity from Lyngbya majuscula form a beta-branched cyclopropane in the curacin A pathway (Cur), and a vinyl chloride group in the jamaicamide pathway (Jam). The components include a halogenase, a 3-hydroxy-3-methylglutaryl enzyme cassette for polyketide beta-branching, and an enoyl reductase domain. The halogenase from CurA, and the dehydratases (ECH1s), decarboxylases (ECH2s) and enoyl reductase domains from both Cur and Jam, were assessed biochemically to determine the mechanisms of cyclopropane and vinyl chloride formation. Unexpectedly, the polyketide beta-branching pathway was modified by introduction of a gamma-chlorination step on (S)-3-hydroxy-3-methylglutaryl mediated by Cur halogenase, a non-haem Fe(ii), alpha-ketoglutarate-dependent enzyme2. In a divergent scheme, Cur ECH2 was found to catalyse formation of the alpha,beta enoyl thioester, whereas Jam ECH2 formed a vinyl chloride moiety by selectively generating the corresponding beta,gamma enoyl thioester of the 3-methyl-4-chloroglutaconyl decarboxylation product. Finally, the enoyl reductase domain of CurF specifically catalysed an unprecedented cyclopropanation on the chlorinated product of Cur ECH2 instead of the canonical alpha,beta C = C saturation reaction. Thus, the combination of chlorination and polyketide beta-branching, coupled with mechanistic diversification of ECH2 and enoyl reductase, leads to the formation of cyclopropane and vinyl chloride moieties. These results reveal a parallel interplay of evolutionary events in multienzyme systems leading to functional group diversity in secondary metabolites.

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