We developed MAbID, a method for combined genomic profiling of histone modifications and chromatin-binding proteins in single cells, enabling researchers to study the interconnectivity between gene-regulatory mechanisms. We demonstrated MAbID’s implementation in profiling multifactorial changes in chromatin signatures during in vitro neural differentiation and in primary mouse bone marrow tissue.
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References
Vandereyken, K. et al. Methods and applications for single-cell and spatial multi-omics. Nat. Rev. Genet. 24, 494–515 (2023). A review article providing an overview of multi-omic and single-cell sequencing technologies.
Gopalan, S. et al. Simultaneous profiling of multiple chromatin proteins in the same cells. Mol. Cell 81, 4736–4746 (2021). One of the first approaches to measure several histone modifications in the same cell by implementing Tn5-tagmentation.
Meers, M. P. et al. Multifactorial profiling of epigenetic landscapes at single-cell resolution using MulTI-Tag. Nat. Biotechnol. 41, 708–716 (2023). A multifactorial method using antibody–adapter conjugates in combination with Tn5.
Bartosovic, M. & Castelo-Branco, G. Multimodal chromatin profiling using nanobody-based single-cell CUT&Tag. Nat. Biotechnol. 41, 794–805 (2023). A method combining multifactorial profiling with ATAC-seq using nanobody–Tn5 fusions.
Handa, T. et al. Chromatin integration labeling for mapping DNA-binding proteins and modifications with low input. Nat. Protoc. 15, 3334–3360 (2020). This protocol describes the generation of uniquely barcoded antibody–DNA conjugates.
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This is a summary of: Lochs, S. J. A. et al. Combinatorial single-cell profiling of major chromatin types with MAbID. Nat. Methods https://doi.org/10.1038/s41592-023-02090-9 (2023).
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Multifactorial epigenomic profiling of six chromatin states in single cells. Nat Methods 21, 20–21 (2024). https://doi.org/10.1038/s41592-023-02091-8
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DOI: https://doi.org/10.1038/s41592-023-02091-8