Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Protocol
  • Published:

An efficient Mitsunobu protocol for the one-pot synthesis of S-glycosyl amino-acid building blocks and their use in combinatorial spot synthesis of glycopeptide libraries

Abstract

Complex glycosylation patterns on cell surfaces are involved in many fundamental biological processes like specific cell–cell interactions and signal transduction. Furthermore, the glycon part of glycopeptides and glycosylated proteins play a crucial role in numerous ligand–receptor interactions of biological significance. However, the distinct function of complex carbohydrate structures associated with cell surfaces and proteins is still only poorly understood at a molecular level with regard to specific carbohydrate–protein interaction. Here, we present an efficient Mitsunobu protocol for the convenient chemical one-pot preparation of S-glycosyl amino-acid building blocks suitable for automated combinatorial syntheses of highly glycosylated β-peptides, which, in turn, can serve as potential mimics for complex oligosaccharides or for studying carbohydrate–protein interactions. The protocol also describes the use of the S-glycosyl amino-acid building blocks for combinatorial spot syntheses of glycopeptide libraries and can be used for the construction of other combinatorial peptide libraries as well. This is a procedure that can be completed in approximately 7 days.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Figure 1
Figure 2
Figure 3
Figure 4
Figure 5
Figure 6: Combinatorial library of 256 glycopeptides constructed out of Glc, Gal and Man building blocks.

Similar content being viewed by others

References

  1. Sharon, N. & Lis, H. Lectins as cell recognition molecules. Science 246, 227–234 (1989).

    Article  CAS  Google Scholar 

  2. Seitz, O. Glycopeptide synthesis and the effects of glycosylation on protein structure and activity. ChemBioChem 1, 214–246 (2000).

    Article  CAS  Google Scholar 

  3. Sampson, N.S., Mrksich, M. & Bertozzi, R.C. Surface molecular recognition. Proc. Natl. Acad. Sci. USA 98, 12870–12871 (2001).

    Article  CAS  Google Scholar 

  4. Rudd, P.M., Elliott, T., Cresswell, P., Wilson, I.A. & Dwek, R.A. Glycosylation and the immune system. Science 291, 2370–2376 (2001).

    Article  CAS  Google Scholar 

  5. Crocker, P.R. Mammalian Carbohydrate Recognition Systems 1–249 (Springer, Heidelberg, 2001).

    Book  Google Scholar 

  6. Danishefsky, J.S. & Allen, J.R. From the laboratory to the clinic: a retrospective on fully synthetic carbohydrate-based anticancer vaccines. Angew. Chem. Int. Ed. Engl. 39, 836–863 (2000).

    Article  CAS  Google Scholar 

  7. Schips, C. & Ziegler, T. A practical one-pot synthesis of new S-glycosyl amino acid building blocks for combinatorial neoglycopeptide synthesis. J. Carbohydr. Chem. 24, 773–788 (2005).

    Article  CAS  Google Scholar 

  8. Frank, R. Spot-synthesis: an easy technique for the positionally addressable, parallel chemical synthesis on a membrane support. Tetrahedron 48, 9217–9232 (1992).

    Article  CAS  Google Scholar 

  9. Frank, R. The SPOT-synthesis technique. Synthetic peptide arrays on membrane supports—principles and applications. J. Immunol. Methods 267, 13–26 (2002).

    Article  CAS  Google Scholar 

  10. Toepert, F. et al. Combining SPOT synthesis and native peptide ligation to create large arrays of WW protein domains. Angew. Chem. Int. Ed. Engl. 42, 1136–1140 (2003).

    Article  CAS  Google Scholar 

  11. Rink, H. Solid-phase synthesis of protected peptide fragments using a trialkoxy-diphenyl-methyl ester resin. Tetrahedron Lett. 28, 3787–3790 (1987).

    Article  CAS  Google Scholar 

Download references

Acknowledgements

We thank A. Just for performing the elemental analyses, K. Albert for measuring the NMR data, B. Kammerer for recording the MALDI-TOF MS and the Fond der Chemischen Industrie for financial support.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Thomas Ziegler.

Ethics declarations

Competing interests

The authors declare no competing financial interests.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Ziegler, T., Schips, C. An efficient Mitsunobu protocol for the one-pot synthesis of S-glycosyl amino-acid building blocks and their use in combinatorial spot synthesis of glycopeptide libraries. Nat Protoc 1, 1987–1994 (2006). https://doi.org/10.1038/nprot.2006.307

Download citation

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1038/nprot.2006.307

Comments

By submitting a comment you agree to abide by our Terms and Community Guidelines. If you find something abusive or that does not comply with our terms or guidelines please flag it as inappropriate.

Search

Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing