Abstract
We have developed an online model constructor and validator called OneStop, which is compliant with SBGN, SBML and MIRIAM standards. Key features of OneStop are: 1) a human readable input form (in addition to SBML upload and saving); 2) live visualization (SBGN graphics) of the reaction network during the construction phase; and 3) online access from any machine with a compatible browser. Sophisticated error feedback simplifies the debugging process during model construction significantly and guides the efforts of new users in a step by step fashion. OneStop is seamlessly integrated with the JWS Online model repository and simulator and also facilitates the importation of models from the BioModels database. In addition, OneStop is part of the SysMO-SEEK platform, which is used for data and model management in the Pan-European SysMO consortium.
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Snoep, J., Du Preez, F., Owen, S. et al. OneStop:JWS Online's access point to SBML,SBGN and MIRIAM compliant annotation. Nat Prec (2011). https://doi.org/10.1038/npre.2011.6349.1
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DOI: https://doi.org/10.1038/npre.2011.6349.1