Abstract
Host-microbe interactions define the life histories of all organisms. We live and die surrounded by harmless and harmful organisms that affect us in a multitude of ways and are themselves affected by our responses. Generations of such reciprocal interactions have produced homeostasis between us and some microbes (commensals), but not between us and others (pathogens), whereas still other microbes (opportunists) change status depending on the host. The study of pathogenesis seeks to define in molecular and genetic terms the difference between these outcomes with the hope of finding ways to prevent disease without losing the symbiotic benefits of microbial colonization.
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References
McGeoch, D.J., Rixon, F.J. & Davison, A.J. Topics in herpesvirus genomics and evolution. Virus Res. 117, 90–104 (2006).
Ahmed, R., Oldstone, M.B.A. & Palese, P. Protective immunity and susceptibility to infectious diseases: lessons from the 1918 influenza pandemic. Nat. Immunol. 8, 1188–1193 (2007).
Zampieri, C.A., Sullivan, N.J. & Nabel, G.J. Immunopathology of highly virulent pathogens: insights from Ebola virus. Nat. Immunol. 8, 1159–1164 (2007).
Roy, C.R. & Mocarski, E.S. Pathogen subversion of cell-intrinsic innate immunity. Nat. Immunol. 8, 1179–1187 (2007).
Quintana-Murci, L., Alcaïs, A., Abel, L. & Casanova, J.-L. Immunology in natura: clinical, epidemiological and evolutionary genetics of infectious diseases. Nat. Immunol. 8, 1165–1171 (2007).
Hampe, J. et al. A genome-wide association scan of nonsynonymous SNPs identifies a susceptibility variant for Crohn disease in ATG16L1. Nat. Genet. 39, 207–211 (2007).
Rioux, J.D. et al. Genome-wide association study identifies new susceptibility loci for Crohn disease and implicates autophagy in disease pathogenesis. Nat. Genet. 39, 596–604 (2007).
Yates, J.R. et al. Complement C3 variant and the risk of age-related macular degeneration. N. Engl. J. Med. 357, 553–561 (2007).
Jiang, N., Tan, N.S., Ho, B. & Ding, J.L. Respiratory protein-generated reactive oxygen species as an antimicrobial strategy. Nat. Immunol. 8, 1114–1122 (2007).
McMichael, A.J. From influenza to HIV—and back? Nat. Immunol. 8, 1149–1151 (2007).
Braaten, D.C. et al. Effective control of chronic gamma-herpesvirus infection by unconventional MHC class Ia–independent CD8 T cells. Plos Pathogens 2, e37 (2006).
Moretta, L., Romagnani, C., Pietra, G., Moretta, A. & Mingari, M.C. NK-CTLs, a novel HLA-E–restricted T-cell subset. Trends Immunol. 24, 136–143 (2003).
Pietra, G. et al. HLA-E-restricted recognition of cytomegalovirus-derived peptides by human CD8+ cytolytic T lymphocytes. Proc. Natl. Acad. Sci. USA 100, 10896–10901 (2003).
Karst, S.M., Wobus, C.E., Lay, M., Davidson, J. & Virgin, H.W. STAT-1–dependent innate immunity to a Norwalk-like virus. Science 299, 1575–1578 (2003).
Wobus, C.E. et al. Replication of a norovirus in cell culture reveals a tropism for dendritic cells and macrophages. PLoS Biol. 2, e432 (2004).
Hsu, C.C., Wobus, C.E., Steffen, E.K., Riley, L.K. & Livingston, R.S. Development of a microsphere-based serologic multiplexed fluorescent immunoassay and a reverse transcriptase PCR assay to detect murine norovirus 1 infection in mice. Clin. Diagn. Lab. Immunol. 12, 1145–1151 (2005).
Thackray, L.B. et al. Murine noroviruses comprising a single genogroup exhibit biological diversity despite limited sequence divergence. J. Virol. 81, 10460–10473 (2007).
Lecuit, M. et al. A transgenic model for listeriosis: role of internalin in crossing the intestinal barrier. Science 292, 1722–1725 (2001).
Ren, R.B., Costantini, F., Gorgacz, E.J., Lee, J.J. & Racaniello, V.R. Transgenic mice expressing a human poliovirus receptor: a new model for poliomyelitis. Cell 63, 353–362 (1990).
Wang, F. et al. Disruption of Erk-dependent type I interferon induction breaks the myxoma virus species barrier. Nat. Immunol. 5, 1266–1274 (2004).
Allander, T. et al. Cloning of a human parvovirus by molecular screening of respiratory tract samples. Proc. Natl. Acad. Sci. USA 102, 12891–12896 (2005).
Allander, T. et al. Identification of a third human polyomavirus. J. Virol. 81, 4130–4136 (2007).
Gaynor, A.M. et al. Identification of a novel polyomavirus from patients with acute respiratory tract infections. PLoS. Pathogens 3, e64 (2007).
Leib, D.A., Machalek, M.A., Williams, B.R., Silverman, R.H. & Virgin, H.W. Specific phenotypic restoration of an attenuated virus by knockout of a host resistance gene. Proc. Natl. Acad. Sci. USA 97, 6097–6101 (2000).
Virgin, H.W. Pathogenesis of viral infection. in Fields Virology (eds. Knipe, D.M. & Howley, P.M.) 327–388 (Lippincott Williams & Wilkins, Philadelphia, 2007).
Lysenko, E.S., Ratner, A.J., Nelson, A.L. & Weiser, J.N. The role of innate immune responses in the outcome of interspecies competition for colonization of mucosal surfaces. PLoS. Pathogens 1, e1 (2005).
Ratner, A.J., Lysenko, E.S., Paul, M.N. & Weiser, J.N. Synergistic proinflammatory responses induced by polymicrobial colonization of epithelial surfaces. Proc. Natl. Acad. Sci. USA 102, 3429–3434 (2005).
Barton, E.S. et al. Herpesvirus latency confers symbiotic protection from bacterial infection. Nature 447, 326–329 (2007).
Pamer, E.G. Immune responses to commensal and environmental microbes. Nat. Immunol. 8, 1173–1178 (2007).
Velazquez, P., Waite, J.C. & Dustin, M.L. Dynamics of host defense: the view at the front lines. Nat. Immunol. 8, 1153–1157 (2007).
Steed, A.L. et al. Gamma interferon blocks gammaherpesvirus reactivation from latency. J. Virol. 80, 192–200 (2006).
Tibbetts, S.A., Van Dyk, L., Speck, S.H. & Virgin, H.W. Immune control of the number and reactivation phenotype of cells latently infected with a gamma-herpesvirus. J. Virol. 76, 7125–7132 (2002).
Sarawar, S.R. et al. Gamma interferon is not essential for recovery from acute infection with murine gammaherpesvirus 68. J. Virol. 71, 3916–3921 (1997).
Dal Canto, A.J., Swanson, P.E., O'Guin, A.K., Speck, S.H. & Virgin, H.W. IFN-gamma action in the media of the great elastic arteries, a novel immunoprivileged site. J. Clin. Invest. 107, R15–R22 (2001).
Weck, K.E. et al. Murine gammaherpesvirus 68 causes severe large vessel arteritis in mice lacking interferon-gamma responsiveness: a new model for virus induced vascular disease. Nat. Med. 3, 1346–1353 (1997).
Gangappa, S., Van Dyk, L.F., Jewett, T.J., Speck, S.H. & Virgin, H.W. Identification of the in vivo role of a viral bcl-2. J. Exp. Med. 195, 931–940 (2002).
Van Dyk, L.F., Virgin, H.W. & Speck, S.H. The murine gammaherpesvirus 68 v-cyclin is a critical regulator of reactivation from latency. J. Virol. 74, 7451–7461 (2000).
Tscharke, D.C., Reading, P.C. & Smith, G.L. Dermal infection with vaccinia virus reveals roles for virus proteins not seen using other inoculation routes. J. Gen. Virol. 83, 1977–1986 (2002).
Alcami, A. & Smith, G.L. A mechanism for the inhibition of fever by a virus. Proc. Natl. Acad. Sci. USA 93, 11029–11034 (1996).
Alcami, A. & Smith, G.L. A soluble receptor for interleukin-1 beta encoded by vaccinia virus: a novel mechanism of virus modulation of the host response to infection. Cell 71, 153–167 (1992).
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'Skip' Virgin, H. In vivo veritas: pathogenesis of infection as it actually happens. Nat Immunol 8, 1143–1147 (2007). https://doi.org/10.1038/ni1529
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DOI: https://doi.org/10.1038/ni1529
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