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| Open AccessPrediction of high anti-angiogenic activity peptides in silico using a generalized linear model and feature selection
- Jose Liñares Blanco
- , Ana B. Porto-Pazos
- & Carlos Fernandez-Lozano
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| Open AccessDeep-RBPPred: Predicting RNA binding proteins in the proteome scale based on deep learning
- Jinfang Zheng
- , Xiaoli Zhang
- & Shiyong Liu
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| Open AccessStructural Analysis of an Epitope Candidate of Triosephosphate Isomerase in Opisthorchis viverrini
- Jonghyeon Son
- , Sulhee Kim
- & Kwang Yeon Hwang
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| Open AccessGOGO: An improved algorithm to measure the semantic similarity between gene ontology terms
- Chenguang Zhao
- & Zheng Wang
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| Open AccessEnhanced Prediction of Hot Spots at Protein-Protein Interfaces Using Extreme Gradient Boosting
- Hao Wang
- , Chuyao Liu
- & Lei Deng
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| Open AccessIn silico and in vivo analyses of the mutated human tissue plasminogen activator (mtPA) and the antithetical effects of P19 silencing suppressor on its expression in two Nicotiana species
- Mahshid Amiri
- , Mokhtar Jalali-Javaran
- & Parastoo Ehsani
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| Open AccessUsing a Classifier Fusion Strategy to Identify Anti-angiogenic Peptides
- Lina Zhang
- , Runtao Yang
- & Chengjin Zhang
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| Open AccessAuxin sensing is a property of an unstructured domain in the Auxin Response Factor ETTIN of Arabidopsis thaliana
- Sara Simonini
- , Philippe J. Mas
- & Darren J. Hart
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| Open AccessComputational characterization and identification of human polycystic ovary syndrome genes
- Xing-Zhong Zhang
- , Yan-Li Pang
- & Yan-Hui Li
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| Open AccessPhosphorylation promotes binding affinity of Rap-Raf complex by allosteric modulation of switch loop dynamics
- Devanand T
- , Prasanna Venkatraman
- & Satyavani Vemparala
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| Open AccessDefining the architecture of KPC-2 Carbapenemase: identifying allosteric networks to fight antibiotics resistance
- Ioannis Galdadas
- , Silvia Lovera
- & Shozeb Haider
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| Open AccessUsing Two-dimensional Principal Component Analysis and Rotation Forest for Prediction of Protein-Protein Interactions
- Lei Wang
- , Zhu-Hong You
- & Yong Zhou
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| Open AccessReciprocal Perspective for Improved Protein-Protein Interaction Prediction
- Kevin Dick
- & James R. Green
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| Open AccessSVM-SulfoSite: A support vector machine based predictor for sulfenylation sites
- Hussam J. AL-barakati
- , Evan W. McConnell
- & Dukka B. KC
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| Open AccessNetwork-based genetic investigation of virulence-associated phenotypes in methicillin-resistant Staphylococcus aureus
- Chan Yeong Kim
- , Muyoung Lee
- & Insuk Lee
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| Open AccessStructural determinants of specificity and regulation of activity in the allosteric loop network of human KLK8/neuropsin
- Mekdes Debela
- , Viktor Magdolen
- & Peter Goettig
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| Open AccessCharacterization of a ripening-related transcription factor FcNAC1 from Fragaria chiloensis fruit
- C. Carrasco-Orellana
- , Y. Stappung
- & R. Herrera
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| Open AccessPrESOgenesis: A two-layer multi-label predictor for identifying fertility-related proteins using support vector machine and pseudo amino acid composition approach
- Mohammad Reza Bakhtiarizadeh
- , Maryam Rahimi
- & Seyed Alireza Salami
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Article
| Open AccessMolecular basis for dengue virus broad cross-neutralization by humanized monoclonal antibody 513
- Yee Hwa Wong
- , Akshita Kumar
- & Julien Lescar
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| Open AccessPhosContext2vec: a distributed representation of residue-level sequence contexts and its application to general and kinase-specific phosphorylation site prediction
- Ying Xu
- , Jiangning Song
- & James C. Whisstock
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| Open AccessA Novel Geometry-Based Approach to Infer Protein Interface Similarity
- Inbal Budowski-Tal
- , Rachel Kolodny
- & Yael Mandel-Gutfreund
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Article
| Open AccessDissecting Structure-Encoded Determinants of Allosteric Cross-Talk between Post-Translational Modification Sites in the Hsp90 Chaperones
- Gabrielle Stetz
- , Amanda Tse
- & Gennady M. Verkhivker
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| Open AccessComparative systems analysis of the secretome of the opportunistic pathogen Aspergillus fumigatus and other Aspergillus species
- R. P. Vivek-Ananth
- , Karthikeyan Mohanraj
- & Areejit Samal
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| Open AccessA molecular dynamics simulation study decodes the Zika virus NS5 methyltransferase bound to SAH and RNA analogue
- Chih-Hung Chuang
- , Shean-jaw Chiou
- & Yeng-Tseng Wang
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| Open AccessIdentification of human glycosyltransferase genes expressed in erythroid cells predicts potential carbohydrate blood group loci
- Magnus Jöud
- , Mattias Möller
- & Martin L. Olsson
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| Open AccessProteomic and bioinformatic pipeline to screen the ligands of S. pneumoniae interacting with human brain microvascular endothelial cells
- Irene Jiménez-Munguía
- , Lucia Pulzova
- & Mangesh Bhide
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| Open AccessThe Apicomplexa-specific glucosamine-6-phosphate N-acetyltransferase gene family encodes a key enzyme for glycoconjugate synthesis with potential as therapeutic target
- Marta Cova
- , Borja López-Gutiérrez
- & Luis Izquierdo
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| Open AccessPANDA: Protein function prediction using domain architecture and affinity propagation
- Zheng Wang
- , Chenguang Zhao
- & Nan Wang
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| Open AccessElectrostatic Variation of Haemagglutinin as a Hallmark of the Evolution of Avian Influenza Viruses
- Alireza Heidari
- , Irene Righetto
- & Francesco Filippini
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| Open AccessA Novel Modeling in Mathematical Biology for Classification of Signal Peptides
- Asma Ehsan
- , Khalid Mahmood
- & Kuo-Chen Chou
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| Open AccessInsights into substrate binding of ferulic acid esterases by arabinose and methyl hydroxycinnamate esters and molecular docking
- Cameron J. Hunt
- , Io Antonopoulou
- & Victoria S. Haritos
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| Open AccessBinding Modes of Teixobactin to Lipid II: Molecular Dynamics Study
- Yang Liu
- , Yaxin Liu
- & Yuguang Mu
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| Open AccessPrediction of cassava protein interactome based on interolog method
- Ratana Thanasomboon
- , Saowalak Kalapanulak
- & Treenut Saithong
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Article
| Open AccessAn engineered opsin monomer scrambles phospholipids
- Kalpana Pandey
- , Birgit Ploier
- & Anant K. Menon
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| Open AccessPreferential selection of Arginine at the lipid-water-interface of TRPV1 during vertebrate evolution correlates with its snorkeling behaviour and cholesterol interaction
- Somdatta Saha
- , Arijit Ghosh
- & Chandan Goswami
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| Open AccessTransition metal binding selectivity in proteins and its correlation with the phylogenomic classification of the cation diffusion facilitator protein family
- Shiran Barber-Zucker
- , Boaz Shaanan
- & Raz Zarivach
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| Open AccessiDNAProt-ES: Identification of DNA-binding Proteins Using Evolutionary and Structural Features
- Shahana Yasmin Chowdhury
- , Swakkhar Shatabda
- & Abdollah Dehzangi
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| Open AccessAmyloidogenic motifs revealed by n-gram analysis
- Michał Burdukiewicz
- , Piotr Sobczyk
- & Małgorzata Kotulska
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| Open AccessActivation-Induced Conformational Changes of Dopamine D3 Receptor Promote the Formation of the Internal Water Channel
- Wei-Hsiang Weng
- , Ya-Tzu Li
- & Hao-Jen Hsu
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| Open AccessGenetic variants affecting equivalent protein family positions reflect human diversity
- Francesco Raimondi
- , Matthew J. Betts
- & Robert B. Russell
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| Open AccessFunctionAnnotator, a versatile and efficient web tool for non-model organism annotation
- Ting-Wen Chen
- , Ruei-Chi Gan
- & Petrus Tang
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| Open AccessRGD delivery of truncated coagulase to tumor vasculature affords local thrombotic activity to induce infarction of tumors in mice
- Rana Jahanban-Esfahlan
- , Khaled Seidi
- & Tahereh Javaheri
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| Open AccessPhosphoPredict: A bioinformatics tool for prediction of human kinase-specific phosphorylation substrates and sites by integrating heterogeneous feature selection
- Jiangning Song
- , Huilin Wang
- & Roger J. Daly
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| Open AccessDynamic scaffolds for neuronal signaling: in silico analysis of the TANC protein family
- Alessandra Gasparini
- , Silvio C. E. Tosatto
- & Emanuela Leonardi
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| Open AccessPredicting the functional consequences of non-synonymous single nucleotide polymorphisms in IL8 gene
- Tikam Chand Dakal
- , Deepak Kala
- & Nikolay V. Dokholyan
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| Open AccessBenchmarking selected computational gene network growing tools in context of virus-host interactions
- Biruhalem Taye
- , Candida Vaz
- & Sebastian Maurer-Stroh
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| Open AccessKnowledge-transfer learning for prediction of matrix metalloprotease substrate-cleavage sites
- Yanan Wang
- , Jiangning Song
- & Hong-Bin Shen
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| Open AccessFunctional determinants of protein assembly into homomeric complexes
- L. Therese Bergendahl
- & Joseph A. Marsh
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| Open AccessAnalysis of positive and negative allosteric modulation in metabotropic glutamate receptors 4 and 5 with a dual ligand
- James A. R. Dalton
- , Jean-Philippe Pin
- & Jesús Giraldo