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Immunoinformatics design of a structural proteins driven multi-epitope candidate vaccine against different SARS-CoV-2 variants based on fynomer
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DeepReg: a deep learning hybrid model for predicting transcription factors in eukaryotic and prokaryotic genomes
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Potential routes of plastics biotransformation involving novel plastizymes revealed by global multi-omic analysis of plastic associated microbes
- Rodney S. Ridley Jr
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Quantum biochemical analysis of the TtgR regulator and effectors
- E. G. de Carvalho Matias
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Enhancing missense variant pathogenicity prediction with protein language models using VariPred
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VirtuousPocketome: a computational tool for screening protein–ligand complexes to identify similar binding sites
- Lorenzo Pallante
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Prediction of linear B-cell epitopes based on protein sequence features and BERT embeddings
- Fang Liu
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Immunoinformatics-guided approach for designing a pan-proteome multi-epitope subunit vaccine against African swine fever virus
- Alea Maurice Simbulan
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Characterizing conformational states in GPCR structures using machine learning
- Ilya Buyanov
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Optimizing strategy for the discovery of compositionally-biased or low-complexity regions in proteins
- Paul M. Harrison
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Evaluating sheep hemoglobins with MD simulations as an animal model for sickle cell disease
- Caroline E. Kuczynski
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Using machine learning model explanations to identify proteins related to severity of meibomian gland dysfunction
- Andrea M. Storås
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PACT - Prediction of amyloid cross-interaction by threading
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Phenotyping EMT and MET cellular states in lung cancer patient liquid biopsies at a personalized level using mass cytometry
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A sequence-based evolutionary distance method for Phylogenetic analysis of highly divergent proteins
- Wei Cao
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Multi-structural molecular docking (MOD) combined with molecular dynamics reveal the structural requirements of designing broad-spectrum inhibitors of SARS-CoV-2 entry to host cells
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Comparative proteomic analysis of edible bird’s nest from different origins
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Characterization of signal and transit peptides based on motif composition and taxon-specific patterns
- Katarzyna Sidorczuk
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Interactions of the male contraceptive target EPPIN with semenogelin-1 and small organic ligands
- Antoniel A. S. Gomes
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A separable temporal convolutional networks based deep learning technique for discovering antiviral medicines
- Vishakha Singh
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Genome-wide analysis and characterization of the LRR-RLK gene family provides insights into anthracnose resistance in common bean
- Caroline Marcela da Silva Dambroz
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Unveiling the functional epitopes of cobra venom cytotoxin by immunoinformatics and epitope-omic analyses
- Jia Jin Hiu
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Proteomic analysis of the effect of hemin in breast cancer
- G. P. Coló
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Full-scale network analysis reveals properties of the FV protein structure organization
- André J. Ferreira-Martins
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Prediction of protein subplastid localization and origin with PlastoGram
- Katarzyna Sidorczuk
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Coenzyme A binding sites induce proximal acylation across protein families
- Chris Carrico
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Increasing the melting temperature of VHH with the in silico free energy score
- Yusuke Tomimoto
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Accurate prediction by AlphaFold2 for ligand binding in a reductive dehalogenase and implications for PFAS (per- and polyfluoroalkyl substance) biodegradation
- Hao-Bo Guo
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A strategy for evaluating potential antiviral resistance to small molecule drugs and application to SARS-CoV-2
- Karen Sargsyan
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Pan-kinome of Legionella expanded by a bioinformatics survey
- Marianna Krysińska
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Parallel functional annotation of cancer-associated missense mutations in histone methyltransferases
- Ashley J. Canning
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Massive annotation of bacterial l-asparaginases reveals their puzzling distribution and frequent gene transfer events
- Andrzej Zielezinski
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Prediction of B cell epitopes in proteins using a novel sequence similarity-based method
- Alvaro Ras-Carmona
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Identification of Daboia siamensis venome using integrated multi-omics data
- Thammakorn Saethang
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Theaflavin 3-gallate inhibits the main protease (Mpro) of SARS-CoV-2 and reduces its count in vitro
- Mahima Chauhan
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A genome-wide comparative evolutionary analysis of zinc finger-BED transcription factor genes in land plants
- Athar Hussain
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Inhibitor induced conformational changes in SARS-COV-2 papain-like protease
- Glaucio Monteiro Ferreira
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Structure and function of cancer-related developmentally regulated GTP-binding protein 1 (DRG1) is conserved between sponges and humans
- Silvestar Beljan
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An accurate alignment-free protein sequence comparator based on physicochemical properties of amino acids
- Saeedeh Akbari Rokn Abadi
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Cooperative stability renders protein complex formation more robust and controllable
- Kuan-Lun Hsu
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Understanding and predicting the functional consequences of missense mutations in BRCA1 and BRCA2
- Raghad Aljarf
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Deep embeddings to comprehend and visualize microbiome protein space
- Krzysztof Odrzywolek
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Dynamic insights into the effects of nonsynonymous polymorphisms (nsSNPs) on loss of TREM2 function
- Raju Dash
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Substantiation of propitious “Enzybiotic” from two novel bacteriophages isolated from a wastewater treatment plant in Qatar
- Ramya Ramadoss
- , Moza Al-Shukri
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Assessment of mutations on RBD in the Spike protein of SARS-CoV-2 Alpha, Delta and Omicron variants
- Clauber Henrique Souza da Costa
- , Camila Auad Beltrão de Freitas
- & Jerônimo Lameira
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Comparing protein–protein interaction networks of SARS-CoV-2 and (H1N1) influenza using topological features
- Hakimeh Khojasteh
- , Alireza Khanteymoori
- & Mohammad Hossein Olyaee
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LIM domain-wide comprehensive virtual mutagenesis provides structural rationale for cardiomyopathy mutations in CSRP3
- Pankaj Kumar Chauhan
- & Ramanathan Sowdhamini
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Interactions of Co, Cu, and non-metal phthalocyanines with external structures of SARS-CoV-2 using docking and molecular dynamics
- Wilson Luna Machado Alencar
- , Tiago da Silva Arouche
- & Antonio Maia de Jesus Chaves Neto
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Regulated cell death joins in atherosclerotic plaque silent progression
- Elena Uyy
- , Viorel I. Suica
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Identification of domains in Plasmodium falciparum proteins of unknown function using DALI search on AlphaFold predictions