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| Open AccessA novel approach for predicting upstream regulators (PURE) that affect gene expression
- Tuan-Minh Nguyen
- , Douglas B. Craig
- & Sorin Draghici
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| Open AccessScalable reaction network modeling with automatic validation of consistency in Event-B
- Usman Sanwal
- , Thai Son Hoang
- & Ion Petre
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| Open AccessCOVIDrugNet: a network-based web tool to investigate the drugs currently in clinical trial to contrast COVID-19
- Luca Menestrina
- , Chiara Cabrelle
- & Maurizio Recanatini
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| Open AccessIn silico identification of natural products from Traditional Chinese Medicine for cancer immunotherapy
- Chuipu Cai
- , Qihui Wu
- & Jiansong Fang
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| Open AccessRadiolysis generates a complex organosynthetic chemical network
- Zachary R. Adam
- , Albert C. Fahrenbach
- & Dmitry Yu. Zubarev
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| Open AccessNetwork Hamiltonian models reveal pathways to amyloid fibril formation
- Yue Yu
- , Gianmarc Grazioli
- & Carter T. Butts
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| Open AccessFrom Persian Gulf to Indonesia: interrelated phylogeographic distance and chemistry within the genus Peronia (Onchidiidae, Gastropoda, Mollusca)
- Fatemeh Maniei
- , Jamshid Amiri Moghaddam
- & Heike Wägele
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| Open AccessPrenatal exposure to bisphenol A alters the transcriptome-interactome profiles of genes associated with Alzheimer’s disease in the offspring hippocampus
- Suporn Sukjamnong
- , Surangrat Thongkorn
- & Tewarit Sarachana
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| Open AccessGene regulatory network analysis with drug sensitivity reveals synergistic effects of combinatory chemotherapy in gastric cancer
- Jeong Hoon Lee
- , Yu Rang Park
- & Sun Gyo Lim
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| Open AccessSimilarity of therapeutic networks induced by a multi-component herbal remedy, Ukgansan, in neurovascular unit cells
- Bu-Yeo Kim
- , Hye-Sun Lim
- & Soo-Jin Jeong
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| Open AccessDescribing the fecal metabolome in cryogenically collected samples from healthy participants
- Kajetan Trošt
- , Linda Ahonen
- & Cristina Legido-Quigley
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| Open AccessRat liver folate metabolism can provide an independent functioning of associated metabolic pathways
- Aleksandr V. Zaitsev
- , Michael V. Martinov
- & Fazoil I. Ataullakhanov
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| Open AccessA bioinformatics investigation into the pharmacological mechanisms of the effect of Fufang Danshen on pain based on methodologies of network pharmacology
- Yantao Sun
- & Jie Yang
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| Open AccessMetabolic network-based predictions of toxicant-induced metabolite changes in the laboratory rat
- Venkat R. Pannala
- , Martha L. Wall
- & Anders Wallqvist
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| Open AccessChemDIS-Mixture: an online tool for analyzing potential interaction effects of chemical mixtures
- Chun-Wei Tung
- , Chia-Chi Wang
- & Pinpin Lin
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| Open AccessConnecting Neuronal Cell Protective Pathways and Drug Combinations in a Huntington’s Disease Model through the Application of Quantitative Systems Pharmacology
- Fen Pei
- , Hongchun Li
- & Mark E. Schurdak
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| Open AccessComputational Cell Cycle Profiling of Cancer Cells for Prioritizing FDA-Approved Drugs with Repurposing Potential
- Yu-Chen Lo
- , Silvia Senese
- & Jorge Z. Torres
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| Open AccessInteractions between LHX3- and ISL1-family LIM-homeodomain transcription factors are conserved in Caenorhabditis elegans
- Mugdha Bhati
- , Estelle Llamosas
- & Jacqueline M. Matthews
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| Open AccessRobust Analysis of Fluxes in Genome-Scale Metabolic Pathways
- Michael MacGillivray
- , Amy Ko
- & Allen Holder
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| Open AccessElucidating the modes of action for bioactive compounds in a cell-specific manner by large-scale chemically-induced transcriptomics
- Michio Iwata
- , Ryusuke Sawada
- & Yoshihiro Yamanishi
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| Open AccessClustering drug-drug interaction networks with energy model layouts: community analysis and drug repurposing
- Lucreţia Udrescu
- , Laura Sbârcea
- & Mihai Udrescu
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| Open AccessStochastic Induction of Long-Term Potentiation and Long-Term Depression
- G. Antunes
- , A. C. Roque
- & F. M. Simoes-de-Souza
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| Open AccessAutapse-induced multiple coherence resonance in single neurons and neuronal networks
- Ergin Yilmaz
- , Mahmut Ozer
- & Matjaž Perc
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| Open AccessRegulation of Irregular Neuronal Firing by Autaptic Transmission
- Daqing Guo
- , Shengdun Wu
- & Dezhong Yao
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| Open AccessDrug target identification using network analysis: Taking active components in Sini decoction as an example
- Si Chen
- , Hailong Jiang
- & Yifeng Chai
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| Open AccessDetermination of Hemicellulose, Cellulose and Lignin in Moso Bamboo by Near Infrared Spectroscopy
- Xiaoli Li
- , Chanjun Sun
- & Yong He
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| Open AccessCo-Expression Network Models Suggest that Stress Increases Tolerance to Mutations
- Sonja Lehtinen
- , Jürg Bähler
- & Christine Orengo
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| Open AccessDisinhibition-induced transitions between absence and tonic-clonic epileptic seizures
- Denggui Fan
- , Qingyun Wang
- & Matjaž Perc
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| Open AccessNon-monotonic dynamics and crosstalk in signaling pathways and their implications for pharmacology
- Roeland van Wijk
- , Sander J. Tans
- & Alireza Mashaghi
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| Open AccessDynamic modular architecture of protein-protein interaction networks beyond the dichotomy of ‘date’ and ‘party’ hubs
- Xiao Chang
- , Tao Xu
- & Kai Wang
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| Open AccessCerebrospinal Fluid Metabolome in Mood Disorders-Remission State has a Unique Metabolic Profile
- Rima Kaddurah-Daouk
- , Peixiong Yuan
- & Wayne Drevets
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| Open AccessMechanisms for redox actions of nicotine and glutathione in cell culture, relevant to periodontitis
- Federico Tinti
- & Mena Soory
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| Open AccessA Bayesian analysis of the chromosome architecture of human disorders by integrating reductionist data
- Frank Emmert-Streib
- , Ricardo de Matos Simoes
- & Matthias Dehmer
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| Open AccessHeterogeneous length of stay of hosts’ movements and spatial epidemic spread
- Chiara Poletto
- , Michele Tizzoni
- & Vittoria Colizza
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| Open AccessCompeting activation mechanisms in epidemics on networks
- Claudio Castellano
- & Romualdo Pastor-Satorras
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| Open AccessEmergence of structural patterns out of synchronization in networks with competitive interactions
- Salvatore Assenza
- , Ricardo Gutiérrez
- & Stefano Boccaletti
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| Open AccessModeling human mobility responses to the large-scale spreading of infectious diseases
- Sandro Meloni
- , Nicola Perra
- & Alessandro Vespignani
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| Open AccessExploring and challenging the network of angiogenesis
- Raúl Montañez
- , Francisca Sánchez-Jiménez
- & Miguel Ángel Medina